Submission Results

Sequence Name: Not Available

GenBank Accession Number: WBPH01000001.1

GenInfo (GI) Number: 0000000000

Download Results: WBPH01000001.1.PHASTER.zip

gi|00000000|ref|WBPH01000001.1| Bacillus cereus strain CH311b_11T 475590, gc%: 33.05%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
158.5Kbintact13051199932-258483 info_outlinePHAGE_Bacill_phBC6A52_NC_004821(14)33.31%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|WBPH01000001.1| Bacillus cereus strain CH311b_11T 475590, gc%: 33.05%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 57 CDS

#CDS PositionBLAST HitE-ValueSequence
1199932..199944attL0.0Showinfo_outline
2206371..206634PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; F8164_00925; phage(gi31415817)5.61e-58Showinfo_outline
3207082..207384PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; F8164_00930; phage(gi31415818)7.39e-27Showinfo_outline
4207534..207668PHAGE_Bacill_phBC6A52_NC_004821: DNA integration/recombination/invertion protein; F8164_00935; phage(gi31415840)7.04e-05Showinfo_outline
5207878..208363PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; F8164_00940; phage(gi31415819)2.70e-104Showinfo_outline
6208605..208617attL0.0Showinfo_outline
7208670..209371PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; F8164_00945; phage(gi31415820)8.20e-166Showinfo_outline
8complement(209410..210519)PHAGE_Bacill_phBC6A52_NC_004821: DNA integration/recombination/invertion protein; F8164_00950; phage(gi31415821)0.0Showinfo_outline
9211128..212336PHAGE_Bacill_phBC6A52_NC_004821: helix-turn-helix protein; F8164_00955; phage(gi31415822)0.0Showinfo_outline
10complement(212782..213132)PHAGE_Bacill_phBC6A52_NC_004821: Transcriptional regulator; F8164_00960; phage(gi31415823)8.21e-60Showinfo_outline
11213268..213279attL0.0Showinfo_outline
12213319..213543PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; F8164_00965; phage(gi31415824)1.23e-33Showinfo_outline
13213584..213850PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; F8164_00970; phage(gi31415825)4.47e-43Showinfo_outline
14214226..215221PHAGE_Deep_s_D6E_NC_019544: replication protein; F8164_00975; phage(gi423262361)1.02e-62Showinfo_outline
15215225..215665hypothetical protein; F8164_009800.0Showinfo_outline
16complement(215668..215922)hypothetical protein; F8164_009850.0Showinfo_outline
17216010..216288PHAGE_Bacill_phBC6A51_NC_004820: Transcription state regulatory protein abrB; F8164_00990; phage(gi31415778)2.51e-24Showinfo_outline
18216281..216640PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; F8164_00995; phage(gi100025)1.05e-40Showinfo_outline
19216660..216824PHAGE_Bacill_BceA1_NC_048628: DNA helicase; F8164_01000; phage(gi100044)3.26e-14Showinfo_outline
20216850..217323PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; F8164_01005; phage(gi100042)4.77e-16Showinfo_outline
21217350..217859PHAGE_Anoxyb_A403_NC_048701: holin; F8164_01010; phage(gi100034)2.78e-30Showinfo_outline
22217863..218339PHAGE_Bacill_WBeta_NC_007734: hypothetical protein; F8164_01015; phage(gi85701417)1.52e-74Showinfo_outline
23219431..219805hypothetical protein; F8164_010200.0Showinfo_outline
24220925..221047PHAGE_Bacill_Gamma_NC_007458: conserved phage protein; F8164_01025; phage(gi77020188)7.76e-06Showinfo_outline
25221345..221815PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; F8164_01030; phage(gi100060)2.28e-51Showinfo_outline
26221812..222354PHAGE_Bacill_BtCS33_NC_018085: integrase; F8164_01035; phage(gi392972759)1.17e-68Showinfo_outline
27222957..223199hypothetical protein; F8164_010400.0Showinfo_outline
28223264..223626hypothetical protein; F8164_010450.0Showinfo_outline
29223613..223837PHAGE_Bacill_phi4B1_NC_028886: hypothetical protein; F8164_01050; phage(gi971821297)4.77e-05Showinfo_outline
30223842..224093hypothetical protein; F8164_010550.0Showinfo_outline
31224207..224401PHAGE_Lister_LP_030_2_NC_021539: HNH homing endonuclease; F8164_01060; phage(gi514051998)8.51e-14Showinfo_outline
32224401..224949PHAGE_Lactob_phiAQ113_NC_019782: HNH endonuclease; F8164_01065; phage(gi446730230)5.35e-47Showinfo_outline
33224946..225254hypothetical protein; F8164_010700.0Showinfo_outline
34225359..225679PHAGE_Clostr_phiCD6356_NC_015262: putative terminase small subunit; F8164_01075; phage(gi326536848)1.19e-12Showinfo_outline
35225723..227342PHAGE_Clostr_phiCD6356_NC_015262: putative terminase large subunit; F8164_01080; phage(gi326536849)3.95e-155Showinfo_outline
36227357..228529PHAGE_Clostr_phiCD6356_NC_015262: putative phage portal protein; F8164_01085; phage(gi326536850)1.19e-93Showinfo_outline
37228510..229223PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; F8164_01090; phage(gi100008)1.64e-66Showinfo_outline
38229266..230429PHAGE_Lister_2389_NC_003291: major capsid protein a; F8164_01095; phage(gi17488508)2.30e-105Showinfo_outline
39230431..230577hypothetical protein; F8164_011000.0Showinfo_outline
40230570..230866PHAGE_Lister_LP_030_2_NC_021539: putative head-tail connector protein; F8164_01105; phage(gi514051939)1.23e-15Showinfo_outline
41230847..231203PHAGE_Lister_LP_030_2_NC_021539: putative head-tail adapter; F8164_01110; phage(gi514051940)1.17e-13Showinfo_outline
42231220..231597hypothetical protein; F8164_011150.0Showinfo_outline
43231584..232012PHAGE_Lister_2389_NC_003291: Gp9 protein; F8164_01120; phage(gi17488512)1.56e-14Showinfo_outline
44232013..232597PHAGE_Lister_2389_NC_003291: major tail protein a; F8164_01125; phage(gi17488513)2.97e-49Showinfo_outline
45232669..233130hypothetical protein; F8164_011300.0Showinfo_outline
46233309..234889PHAGE_Lister_2389_NC_003291: tail tape measure protein; F8164_01135; phage(gi17488515)4.86e-44Showinfo_outline
47234913..234924attR0.0Showinfo_outline
48235145..235402PHAGE_Clostr_phiCD111_NC_028905: Tail tape measure; F8164_01140; phage(gi971820061)6.46e-08Showinfo_outline
49235626..238466PHAGE_Bacill_IEBH_NC_011167: carbamoyl-phosphate synthase large subunit; F8164_01145; phage(gi197261572)1.03e-98Showinfo_outline
50238468..239151PHAGE_Bacill_phBC6A52_NC_004821: Gp13 protein; F8164_01150; phage(gi31415860)7.08e-126Showinfo_outline
51239151..241556PHAGE_Bacill_phBC6A52_NC_004821: endopeptidase; F8164_01155; phage(gi31415861)0.0Showinfo_outline
52241571..242752PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; F8164_01160; phage(gi31415863)1.57e-152Showinfo_outline
53242833..243072PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; F8164_01165; phage(gi100073)7.33e-51Showinfo_outline
54243115..243345PHAGE_Bacill_Waukesha92_NC_025424: SPP1 family holin; F8164_01170; phage(gi712912404)1.20e-45Showinfo_outline
55243362..244294PHAGE_Bacill_Waukesha92_NC_025424: endolysin; F8164_01175; phage(gi712912403)0.0Showinfo_outline
56246304..246316attR0.0Showinfo_outline
57258483..258495attR0.0Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 475590 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download