Submission Results

Sequence Name: Not Available

GenBank Accession Number: WBPH01000004.1

GenInfo (GI) Number: 0000000000

Download Results: WBPH01000004.1.PHASTER.zip

gi|00000000|ref|WBPH01000004.1| Bacillus cereus strain CH311b_11T 53459, gc%: 36.66%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
152.9Kbintact12074164-53159 info_outlinePHAGE_Bacill_IEBH_NC_011167(37)36.72%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|WBPH01000004.1| Bacillus cereus strain CH311b_11T 53459, gc%: 36.66%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 74 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(164..391)PHAGE_Bacill_BMBtpLA_NC_028748: hypothetical protein; F8164_03650; phage(gi971482502)2.63e-09Showinfo_outline
2complement(495..1025)PHAGE_Bacill_250_NC_029024: hypothetical protein; F8164_03655; phage(gi971766645)2.21e-120Showinfo_outline
3complement(1035..1415)PHAGE_Bacill_250_NC_029024: hypothetical protein; F8164_03660; phage(gi971766659)6.31e-73Showinfo_outline
4complement(1544..1876)PHAGE_Bacill_250_NC_029024: hypothetical protein; F8164_03665; phage(gi971766667)1.74e-45Showinfo_outline
5complement(1842..2873)PHAGE_Bacill_250_NC_029024: hypothetical protein; F8164_03670; phage(gi971766628)0.0Showinfo_outline
6complement(3045..3875)hypothetical protein; F8164_036750.0Showinfo_outline
7complement(3996..4712)hypothetical protein; F8164_036800.0Showinfo_outline
8complement(4747..5277)PHAGE_Bacill_Deep_Purple_NC_048667: hypothetical protein; F8164_03685; phage(gi100007)8.28e-26Showinfo_outline
9complement(5394..6053)PHAGE_Bacill_BMBtpLA_NC_028748: hypothetical protein; F8164_03690; phage(gi971482507)1.56e-60Showinfo_outline
10complement(6074..6502)helix-turn-helix domain-containing protein; F8164_036950.0Showinfo_outline
117487..7753PHAGE_Bacill_250_NC_029024: hypothetical protein; F8164_03700; phage(gi971766669)1.72e-52Showinfo_outline
12complement(7973..8668)hypothetical protein; F8164_037050.0Showinfo_outline
13complement(8730..9434)PHAGE_Bacill_250_NC_029024: hypothetical protein; F8164_03710; phage(gi971766642)1.93e-62Showinfo_outline
14complement(9587..9844)hypothetical protein; F8164_037150.0Showinfo_outline
15complement(10048..10392)PHAGE_Bacill_phBC6A51_NC_004820: Transcriptional regulator, MerR family; F8164_03720; phage(gi31415741)3.52e-26Showinfo_outline
1610908..12107PHAGE_Bacill_250_NC_029024: helix-turn-helix domain protein; F8164_03725; phage(gi971766626)3.35e-35Showinfo_outline
17complement(12606..12965)PHAGE_Bacill_250_NC_029024: helix-turn-helix domain protein; F8164_03730; phage(gi971766654)4.82e-15Showinfo_outline
1813163..13357PHAGE_Thermu_OH2_NC_021784: immunity repressor protein (phage-like protein); F8164_03735; phage(gi526118362)9.27e-09Showinfo_outline
1913444..14202PHAGE_Lactob_phiAT3_NC_005893: putative antirepressor protein; F8164_03740; phage(gi48697283)1.06e-65Showinfo_outline
2014471..14659PHAGE_Bacill_phiNIT1_NC_021856: hypothetical protein; F8164_03745; phage(gi526118538)2.35e-08Showinfo_outline
2114896..15096PHAGE_Bacill_BM5_NC_029069: hypothetical protein; F8164_03750; phage(gi985757872)1.41e-08Showinfo_outline
2215292..15477hypothetical protein; F8164_037550.0Showinfo_outline
2315470..16144PHAGE_Bacill_phi4B1_NC_028886: Erf family protein; F8164_03760; phage(gi971821254)1.57e-94Showinfo_outline
2416159..16344PHAGE_Bacill_IEBH_NC_011167: hypothetical protein; F8164_03765; phage(gi197261516)4.12e-12Showinfo_outline
2516344..16565PHAGE_Bacill_250_NC_029024: hypothetical protein; F8164_03770; phage(gi971766671)4.74e-05Showinfo_outline
2616566..17117PHAGE_Bacill_phIS3501_NC_019502: phage replication protein DnaD; F8164_03775; phage(gi422934307)4.36e-105Showinfo_outline
2717434..18315PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; F8164_03780; phage(gi31415829)1.06e-111Showinfo_outline
2818328..18591PHAGE_Bacill_IEBH_NC_011167: hypothetical protein; F8164_03785; phage(gi197261521)4.72e-27Showinfo_outline
2918506..18793PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; F8164_03790; phage(gi100042)3.42e-51Showinfo_outline
3018790..19056PHAGE_Bacill_phiCM3_NC_023599: hypothetical protein; F8164_03795; phage(gi589892751)1.22e-35Showinfo_outline
3119067..19621PHAGE_Bacill_250_NC_029024: hypothetical protein; F8164_03800; phage(gi971766652)4.23e-25Showinfo_outline
3219618..20025PHAGE_Bacill_250_NC_029024: hypothetical protein; F8164_03805; phage(gi971766653)5.98e-43Showinfo_outline
3320034..20174PHAGE_Bacill_IEBH_NC_011167: hypothetical protein; F8164_03810; phage(gi197261527)1.88e-14Showinfo_outline
3420161..20541PHAGE_Lactob_Lrm1_NC_011104: hypothetical protein; F8164_03815; phage(gi195661248)2.30e-14Showinfo_outline
3520538..20732PHAGE_Bacill_IEBH_NC_011167: hypothetical protein; F8164_03820; phage(gi197261528)7.28e-36Showinfo_outline
3620799..21047PHAGE_Bacill_IEBH_NC_011167: hypothetical protein; F8164_03825; phage(gi197261530)1.67e-48Showinfo_outline
3721239..21742PHAGE_Aeriba_AP45_NC_048651: hypothetical protein; F8164_03830; phage(gi100019)6.42e-27Showinfo_outline
3821968..22369PHAGE_Bacill_BMBtpLA_NC_028748: hypothetical protein; F8164_03835; phage(gi971482532)3.51e-23Showinfo_outline
3922373..22747hypothetical protein; F8164_038400.0Showinfo_outline
4022784..23029hypothetical protein; F8164_038450.0Showinfo_outline
4123064..23462PHAGE_Bacill_phiCM3_NC_023599: hypothetical protein; F8164_03850; phage(gi589892757)5.53e-69Showinfo_outline
4223931..24473PHAGE_Clostr_CDKM15_NC_048643: head morphogenesis protein; F8164_03855; phage(gi100068)9.17e-70Showinfo_outline
4324382..24846PHAGE_Strept_phiARI0746_NC_031907: hypothetical protein; F8164_03860; phage(gi100028)1.03e-35Showinfo_outline
4424924..25592CopG family transcriptional regulator; F8164_038650.0Showinfo_outline
4525630..25821PHAGE_Bacill_phiNIT1_NC_021856: hypothetical protein; F8164_03870; phage(gi526118538)4.92e-08Showinfo_outline
4626329..26613hypothetical protein; F8164_038750.0Showinfo_outline
4726647..27063PHAGE_Thermu_OH2_NC_021784: endodeoxyribonuclease RusA; F8164_03880; phage(gi526118343)2.74e-61Showinfo_outline
4827060..27248PHAGE_Bacill_IEBH_NC_011167: hypothetical protein; F8164_03885; phage(gi197261548)1.23e-25Showinfo_outline
4927389..27775PHAGE_Bacill_250_NC_029024: hypothetical protein; F8164_03890; phage(gi971766657)1.65e-21Showinfo_outline
5027825..28169PHAGE_Bacill_Moonbeam_NC_027374: hypothetical protein; F8164_03895; phage(gi100011)1.38e-05Showinfo_outline
5129538..29882PHAGE_Bacill_CampHawk_NC_022761: hypothetical protein; F8164_03900; phage(gi557478958)1.82e-32Showinfo_outline
5230018..30371PHAGE_Bacill_BCU4_NC_047735: deoxynucleoside kinase; F8164_03905; phage(gi100082)6.18e-54Showinfo_outline
5330648..30896hypothetical protein; F8164_039100.0Showinfo_outline
5431093..31308PHAGE_Bacill_PfEFR_5_NC_031055: capsid decoration protein; F8164_03915; phage(gi100066)1.74e-21Showinfo_outline
5531459..32400PHAGE_Bacill_IEBH_NC_011167: terminase small subunit; F8164_03920; phage(gi197261558)0.0Showinfo_outline
5632381..33658PHAGE_Bacill_250_NC_029024: phage terminase large subunit; F8164_03925; phage(gi971766625)0.0Showinfo_outline
5733669..35183PHAGE_Bacill_250_NC_029024: phage portal protein; F8164_03930; phage(gi971766622)0.0Showinfo_outline
5835187..36314PHAGE_Bacill_250_NC_029024: gp4-like protein; F8164_03935; phage(gi971766637)4.25e-164Showinfo_outline
5936326..36976PHAGE_Bacill_250_NC_029024: hypothetical protein; F8164_03940; phage(gi971766639)9.41e-117Showinfo_outline
6037051..37947PHAGE_Bacill_250_NC_029024: major capsid protein; F8164_03945; phage(gi971766631)0.0Showinfo_outline
6138001..38240PHAGE_Bacill_IEBH_NC_011167: hypothetical protein; F8164_03950; phage(gi197261564)5.26e-38Showinfo_outline
6238249..38650PHAGE_Bacill_250_NC_029024: gp8 protein; F8164_03955; phage(gi971766656)9.18e-86Showinfo_outline
6338647..39003PHAGE_Bacill_250_NC_029024: gp9 protein; F8164_03960; phage(gi971766664)4.74e-81Showinfo_outline
6439000..39350PHAGE_Bacill_250_NC_029024: hypothetical protein; F8164_03965; phage(gi971766668)3.35e-58Showinfo_outline
6539362..39781PHAGE_Bacill_250_NC_029024: hypothetical protein; F8164_03970; phage(gi971766649)6.69e-86Showinfo_outline
6639786..40229PHAGE_Bacill_250_NC_029024: major capsid protein; F8164_03975; phage(gi971766650)1.54e-79Showinfo_outline
6740312..40716PHAGE_Bacill_250_NC_029024: gp14-like protein; F8164_03980; phage(gi971766655)1.15e-59Showinfo_outline
6840728..41396PHAGE_Bacill_250_NC_029024: gp15; F8164_03985; phage(gi971766638)7.73e-133Showinfo_outline
6941389..45141PHAGE_Bacill_250_NC_029024: carbamoyl-phosphate synthase large subunit; F8164_03990; phage(gi971766620)0.0Showinfo_outline
7045190..46668PHAGE_Bacill_250_NC_029024: phage putative tail component; F8164_03995; phage(gi971766621)0.0Showinfo_outline
7146668..51374PHAGE_Bacill_250_NC_029024: phage minor structural protein; F8164_04000; phage(gi971766619)0.0Showinfo_outline
7251414..51839PHAGE_Bacill_phi4J1_NC_029008: holin; F8164_04005; phage(gi971821606)1.69e-94Showinfo_outline
7351839..52774PHAGE_Bacill_Waukesha92_NC_025424: endolysin; F8164_04010; phage(gi712912403)0.0Showinfo_outline
74complement(52806..53159)PHAGE_Staphy_phiRS7_NC_022914: YolD-like protein; F8164_04015; phage(gi560185985)9.16e-14Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 53459 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download