Submission Results

Sequence Name: Not Available

GenBank Accession Number: WBPI01000010.1

GenInfo (GI) Number: 0000000000

Download Results: WBPI01000010.1.PHASTER.zip

gi|00000000|ref|WBPI01000010.1| Bacillus cereus strain CH316_11T 646771, gc%: 33.17%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
162.9Kbintact15048242983-305941 info_outlinePHAGE_Lister_2389_NC_003291(15)32.71%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|WBPI01000010.1| Bacillus cereus strain CH316_11T 646771, gc%: 33.17%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 54 CDS

#CDS PositionBLAST HitE-ValueSequence
1242983..242998attL0.0Showinfo_outline
2243232..243244attL0.0Showinfo_outline
3246983..246994attL0.0Showinfo_outline
4257322..257585PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; F8165_16510; phage(gi31415817)5.61e-58Showinfo_outline
5258134..258463PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; F8165_16515; phage(gi31415818)8.49e-65Showinfo_outline
6258957..259442PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; F8165_16520; phage(gi31415819)3.07e-113Showinfo_outline
7259754..260425PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; F8165_16525; phage(gi31415820)1.49e-160Showinfo_outline
8complement(260628..261737)PHAGE_Bacill_phBC6A52_NC_004821: DNA integration/recombination/invertion protein; F8165_16530; phage(gi31415821)0.0Showinfo_outline
9262344..263552PHAGE_Bacill_phBC6A52_NC_004821: helix-turn-helix protein; F8165_16535; phage(gi31415822)0.0Showinfo_outline
10complement(263998..264348)PHAGE_Bacill_phBC6A52_NC_004821: Transcriptional regulator; F8165_16540; phage(gi31415823)2.07e-59Showinfo_outline
11264535..264759PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; F8165_16545; phage(gi31415824)1.49e-34Showinfo_outline
12264801..265067PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; F8165_16550; phage(gi31415825)4.47e-43Showinfo_outline
13265443..266423PHAGE_Deep_s_D6E_NC_019544: replication protein; F8165_16555; phage(gi423262361)1.77e-61Showinfo_outline
14266427..266705PHAGE_Bacill_phBC6A51_NC_004820: Transcription state regulatory protein abrB; F8165_16560; phage(gi31415778)1.50e-24Showinfo_outline
15266698..267057PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; F8165_16565; phage(gi100025)2.37e-40Showinfo_outline
16267076..267243PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; F8165_16570; phage(gi31415831)1.29e-17Showinfo_outline
17267268..267519PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; F8165_16575; phage(gi100042)8.14e-23Showinfo_outline
18267539..267994PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; F8165_16580; phage(gi100062)5.73e-28Showinfo_outline
19complement(268124..268921)RNA methyltransferase; F8165_165850.0Showinfo_outline
20complement(269284..269856)PHAGE_Bacill_WBeta_NC_007734: putative mannose 6-phosphate isomerase; F8165_16590; phage(gi85701420)4.89e-108Showinfo_outline
21270470..270775PHAGE_Bacill_Shbh1_NC_030925: holin; F8165_16595; phage(gi100034)4.51e-26Showinfo_outline
22271873..272121PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; F8165_16600; phage(gi100029)2.57e-47Showinfo_outline
23272143..272346hypothetical protein; F8165_166050.0Showinfo_outline
24272451..272753PHAGE_Bacill_BCU4_NC_047735: portal protein; F8165_16610; phage(gi100069)3.10e-34Showinfo_outline
25272765..272887PHAGE_Bacill_Gamma_NC_007458: conserved phage protein; F8165_16615; phage(gi77020188)2.99e-05Showinfo_outline
26272994..273005attR0.0Showinfo_outline
27273196..273678PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; F8165_16620; phage(gi31415839)1.27e-115Showinfo_outline
28273678..274220PHAGE_Bacill_phBC6A52_NC_004821: DNA integration/recombination/invertion protein; F8165_16625; phage(gi31415840)4.70e-114Showinfo_outline
29274476..275327leucine-rich repeat protein; F8165_166300.0Showinfo_outline
30275776..276411hypothetical protein; F8165_166350.0Showinfo_outline
31276635..277210PHAGE_Entero_P4_NC_001609: hypothetical protein; F8165_16640; phage(gi9627510)6.12e-17Showinfo_outline
32complement(277167..278273)hypothetical protein; F8165_166450.0Showinfo_outline
33278497..278823PHAGE_Staphy_P1105_NC_048636: portal protein; F8165_16650; phage(gi100069)7.61e-17Showinfo_outline
34278880..279134hypothetical protein; F8165_166550.0Showinfo_outline
35279553..280053PHAGE_Clostr_phiCD6356_NC_015262: putative terminase small subunit; F8165_16660; phage(gi326536848)1.31e-32Showinfo_outline
36280037..281707PHAGE_Clostr_phiCD6356_NC_015262: putative terminase large subunit; F8165_16665; phage(gi326536849)5.07e-159Showinfo_outline
37281724..282965PHAGE_Clostr_phiCD6356_NC_015262: putative phage portal protein; F8165_16670; phage(gi326536850)1.57e-74Showinfo_outline
38282982..283611PHAGE_Lister_LP_030_2_NC_021539: Clp protease-like protein; F8165_16675; phage(gi514051936)2.06e-47Showinfo_outline
39283627..284748PHAGE_Lister_2389_NC_003291: major capsid protein a; F8165_16680; phage(gi17488508)1.85e-125Showinfo_outline
40284762..285085PHAGE_Lister_LP_030_2_NC_021539: putative head-tail connector protein; F8165_16685; phage(gi514051939)1.28e-08Showinfo_outline
41285075..285431PHAGE_Lister_LP_030_2_NC_021539: putative head-tail adapter; F8165_16690; phage(gi514051940)2.94e-07Showinfo_outline
42285418..285798PHAGE_Lister_2389_NC_003291: Gp8 protein; F8165_16695; phage(gi17488511)8.45e-16Showinfo_outline
43285788..286198PHAGE_Lister_2389_NC_003291: Gp9 protein; F8165_16700; phage(gi17488512)4.25e-15Showinfo_outline
44286200..286769PHAGE_Lister_2389_NC_003291: major tail protein b; F8165_16705; phage(gi29789897)4.65e-51Showinfo_outline
45286831..287181PHAGE_Lister_LP_030_2_NC_021539: hypothetical protein; F8165_16710; phage(gi514051945)1.61e-09Showinfo_outline
46287364..291194PHAGE_Paenib_Tadhana_NC_048691: hypothetical protein; F8165_16715; phage(gi100014)8.86e-88Showinfo_outline
47291187..291873PHAGE_Bacill_phBC6A52_NC_004821: Gp13 protein; F8165_16720; phage(gi31415860)1.25e-82Showinfo_outline
48291870..294599PHAGE_Bacill_phBC6A52_NC_004821: endopeptidase; F8165_16725; phage(gi31415861)0.0Showinfo_outline
49294711..294723attR0.0Showinfo_outline
50294745..295200DUF2441 domain-containing protein; F8165_167300.0Showinfo_outline
51295268..296227PHAGE_Bacill_BtCS33_NC_018085: site-specific recombinase; F8165_16735; phage(gi392972725)0.0Showinfo_outline
52296243..296668PHAGE_Bacill_WBeta_NC_007734: phage holin; F8165_16740; phage(gi85701395)2.05e-93Showinfo_outline
53296668..297603PHAGE_Bacill_Waukesha92_NC_025424: endolysin; F8165_16745; phage(gi712912403)0.0Showinfo_outline
54305941..305956attR0.0Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

Viewer Options
Length: 646771 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download