Submission Results

Sequence Name: Not Available

GenBank Accession Number: WBPJ01000001.1

GenInfo (GI) Number: 0000000000

Download Results: WBPJ01000001.1.PHASTER.zip

gi|00000000|ref|WBPJ01000001.1| Bacillus cereus strain CH370b_12T 53440, gc%: 36.66%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
146.8Kbintact1206849-46858 info_outlinePHAGE_Bacill_IEBH_NC_011167(33)37.26%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|WBPJ01000001.1| Bacillus cereus strain CH370b_12T 53440, gc%: 36.66%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 68 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(49..408)PHAGE_Bacill_250_NC_029024: helix-turn-helix domain protein; F8166_00005; phage(gi971766654)4.82e-15Showinfo_outline
2606..800PHAGE_Thermu_OH2_NC_021784: immunity repressor protein (phage-like protein); F8166_00010; phage(gi526118362)9.27e-09Showinfo_outline
3887..1645PHAGE_Lactob_phiAT3_NC_005893: putative antirepressor protein; F8166_00015; phage(gi48697283)1.19e-65Showinfo_outline
41914..2102PHAGE_Bacill_phiNIT1_NC_021856: hypothetical protein; F8166_00020; phage(gi526118538)2.35e-08Showinfo_outline
52339..2539PHAGE_Bacill_BM5_NC_029069: hypothetical protein; F8166_00025; phage(gi985757872)1.41e-08Showinfo_outline
62735..2920hypothetical protein; F8166_000300.0Showinfo_outline
72913..3587PHAGE_Bacill_phi4B1_NC_028886: Erf family protein; F8166_00035; phage(gi971821254)1.57e-94Showinfo_outline
83602..3787PHAGE_Bacill_IEBH_NC_011167: hypothetical protein; F8166_00040; phage(gi197261516)4.12e-12Showinfo_outline
93787..4008PHAGE_Bacill_250_NC_029024: hypothetical protein; F8166_00045; phage(gi971766671)5.69e-05Showinfo_outline
104009..4560PHAGE_Bacill_phIS3501_NC_019502: phage replication protein DnaD; F8166_00050; phage(gi422934307)4.36e-105Showinfo_outline
114877..5758PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; F8166_00055; phage(gi31415829)1.06e-111Showinfo_outline
125771..6034PHAGE_Bacill_IEBH_NC_011167: hypothetical protein; F8166_00060; phage(gi197261521)4.72e-27Showinfo_outline
135949..6236PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; F8166_00065; phage(gi100042)3.42e-51Showinfo_outline
146233..6499PHAGE_Bacill_phiCM3_NC_023599: hypothetical protein; F8166_00070; phage(gi589892751)1.22e-35Showinfo_outline
156510..7064PHAGE_Bacill_250_NC_029024: hypothetical protein; F8166_00075; phage(gi971766652)4.23e-25Showinfo_outline
167061..7468PHAGE_Bacill_250_NC_029024: hypothetical protein; F8166_00080; phage(gi971766653)5.98e-43Showinfo_outline
177477..7617PHAGE_Bacill_IEBH_NC_011167: hypothetical protein; F8166_00085; phage(gi197261527)1.88e-14Showinfo_outline
187604..7984PHAGE_Lactob_Lrm1_NC_011104: hypothetical protein; F8166_00090; phage(gi195661248)2.30e-14Showinfo_outline
197981..8175PHAGE_Bacill_IEBH_NC_011167: hypothetical protein; F8166_00095; phage(gi197261528)7.28e-36Showinfo_outline
208242..8490PHAGE_Bacill_IEBH_NC_011167: hypothetical protein; F8166_00100; phage(gi197261530)1.67e-48Showinfo_outline
218682..9185PHAGE_Aeriba_AP45_NC_048651: hypothetical protein; F8166_00105; phage(gi100019)5.60e-26Showinfo_outline
229411..9812PHAGE_Bacill_BMBtpLA_NC_028748: hypothetical protein; F8166_00110; phage(gi971482532)3.51e-23Showinfo_outline
239816..10190hypothetical protein; F8166_001150.0Showinfo_outline
2410227..10472hypothetical protein; F8166_001200.0Showinfo_outline
2510507..10905PHAGE_Bacill_phiCM3_NC_023599: hypothetical protein; F8166_00125; phage(gi589892757)5.53e-69Showinfo_outline
2611374..11916PHAGE_Clostr_CDKM9_NC_048642: capsid decoration protein; F8166_00130; phage(gi100066)3.68e-67Showinfo_outline
2711825..12289PHAGE_Strept_phiARI0746_NC_031907: hypothetical protein; F8166_00135; phage(gi100028)1.03e-35Showinfo_outline
2812367..13035CopG family transcriptional regulator; F8166_001400.0Showinfo_outline
2913073..13264PHAGE_Bacill_phiNIT1_NC_021856: hypothetical protein; F8166_00145; phage(gi526118538)4.92e-08Showinfo_outline
3013772..14056hypothetical protein; F8166_001500.0Showinfo_outline
3114090..14506PHAGE_Thermu_OH2_NC_021784: endodeoxyribonuclease RusA; F8166_00155; phage(gi526118343)2.74e-61Showinfo_outline
3214503..14691PHAGE_Bacill_IEBH_NC_011167: hypothetical protein; F8166_00160; phage(gi197261548)1.23e-25Showinfo_outline
3314832..15218PHAGE_Bacill_250_NC_029024: hypothetical protein; F8166_00165; phage(gi971766657)1.65e-21Showinfo_outline
3415268..15612PHAGE_Bacill_Moonbeam_NC_027374: hypothetical protein; F8166_00170; phage(gi100011)1.38e-05Showinfo_outline
3516981..17325PHAGE_Bacill_CampHawk_NC_022761: hypothetical protein; F8166_00175; phage(gi557478958)1.82e-32Showinfo_outline
3617461..17814PHAGE_Bacill_BCU4_NC_047735: deoxynucleoside kinase; F8166_00180; phage(gi100082)6.18e-54Showinfo_outline
3718091..18339hypothetical protein; F8166_001850.0Showinfo_outline
3818536..18751PHAGE_Bacill_PfEFR_5_NC_031055: capsid decoration protein; F8166_00190; phage(gi100066)1.74e-21Showinfo_outline
3918902..19843PHAGE_Bacill_IEBH_NC_011167: terminase small subunit; F8166_00195; phage(gi197261558)0.0Showinfo_outline
4019824..21101PHAGE_Bacill_250_NC_029024: phage terminase large subunit; F8166_00200; phage(gi971766625)0.0Showinfo_outline
4121112..22626PHAGE_Bacill_250_NC_029024: phage portal protein; F8166_00205; phage(gi971766622)0.0Showinfo_outline
4222630..23757PHAGE_Bacill_250_NC_029024: gp4-like protein; F8166_00210; phage(gi971766637)4.25e-164Showinfo_outline
4323769..24419PHAGE_Bacill_250_NC_029024: hypothetical protein; F8166_00215; phage(gi971766639)9.41e-117Showinfo_outline
4424494..25390PHAGE_Bacill_250_NC_029024: major capsid protein; F8166_00220; phage(gi971766631)0.0Showinfo_outline
4525444..25683PHAGE_Bacill_IEBH_NC_011167: hypothetical protein; F8166_00225; phage(gi197261564)5.26e-38Showinfo_outline
4625692..26093PHAGE_Bacill_250_NC_029024: gp8 protein; F8166_00230; phage(gi971766656)9.18e-86Showinfo_outline
4726090..26446PHAGE_Bacill_250_NC_029024: gp9 protein; F8166_00235; phage(gi971766664)4.74e-81Showinfo_outline
4826443..26793PHAGE_Bacill_250_NC_029024: hypothetical protein; F8166_00240; phage(gi971766668)3.35e-58Showinfo_outline
4926805..27224PHAGE_Bacill_250_NC_029024: hypothetical protein; F8166_00245; phage(gi971766649)6.69e-86Showinfo_outline
5027229..27672PHAGE_Bacill_250_NC_029024: major capsid protein; F8166_00250; phage(gi971766650)1.54e-79Showinfo_outline
5127755..28159PHAGE_Bacill_250_NC_029024: gp14-like protein; F8166_00255; phage(gi971766655)1.15e-59Showinfo_outline
5228171..28839PHAGE_Bacill_250_NC_029024: gp15; F8166_00260; phage(gi971766638)7.73e-133Showinfo_outline
5328832..32584PHAGE_Bacill_250_NC_029024: carbamoyl-phosphate synthase large subunit; F8166_00265; phage(gi971766620)0.0Showinfo_outline
5432633..34112PHAGE_Bacill_250_NC_029024: phage putative tail component; F8166_00270; phage(gi971766621)0.0Showinfo_outline
5534112..38818PHAGE_Bacill_250_NC_029024: phage minor structural protein; F8166_00275; phage(gi971766619)0.0Showinfo_outline
5638858..39283PHAGE_Bacill_phi4J1_NC_029008: holin; F8166_00280; phage(gi971821606)1.69e-94Showinfo_outline
5739283..40218PHAGE_Bacill_Waukesha92_NC_025424: endolysin; F8166_00285; phage(gi712912403)0.0Showinfo_outline
58complement(40250..40603)PHAGE_Staphy_phiRS7_NC_022914: YolD-like protein; F8166_00290; phage(gi560185985)9.16e-14Showinfo_outline
59complement(40685..40954)hypothetical protein; F8166_002950.0Showinfo_outline
60complement(40969..41196)PHAGE_Bacill_BMBtpLA_NC_028748: hypothetical protein; F8166_00300; phage(gi971482502)2.63e-09Showinfo_outline
61complement(41300..41830)PHAGE_Bacill_250_NC_029024: hypothetical protein; F8166_00305; phage(gi971766645)2.21e-120Showinfo_outline
62complement(41840..42220)PHAGE_Bacill_250_NC_029024: hypothetical protein; F8166_00310; phage(gi971766659)6.31e-73Showinfo_outline
63complement(42349..42681)PHAGE_Bacill_250_NC_029024: hypothetical protein; F8166_00315; phage(gi971766667)1.74e-45Showinfo_outline
64complement(42647..43678)PHAGE_Bacill_250_NC_029024: hypothetical protein; F8166_00320; phage(gi971766628)0.0Showinfo_outline
65complement(43850..44680)hypothetical protein; F8166_003250.0Showinfo_outline
66complement(44801..45517)hypothetical protein; F8166_003300.0Showinfo_outline
67complement(45552..46082)PHAGE_Bacill_Deep_Purple_NC_048667: hypothetical protein; F8166_00335; phage(gi100007)8.28e-26Showinfo_outline
68complement(46199..46858)PHAGE_Bacill_BMBtpLA_NC_028748: hypothetical protein; F8166_00340; phage(gi971482507)1.56e-60Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 53440 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download