Submission Results

Sequence Name: Not Available

GenBank Accession Number: WBPK01000001.1

GenInfo (GI) Number: 0000000000

Download Results: WBPK01000001.1.PHASTER.zip

gi|00000000|ref|WBPK01000001.1| Bacillus cereus strain CH372_12D 249404, gc%: 35.53%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
182.7Kbintact138921-82778 info_outlinePHAGE_Bacill_phBC6A51_NC_004820(69)36.27%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|WBPK01000001.1| Bacillus cereus strain CH372_12D 249404, gc%: 35.53%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 96 CDS

#CDS PositionBLAST HitE-ValueSequence
11..2779PHAGE_Bacill_BMBtpLA_NC_028748: minor structure protein; F8167_00005; phage(gi971482494)0.0Showinfo_outline
24153..4389PHAGE_Bacill_phBC6A51_NC_004820: XpaF1 protein; F8167_00010; phage(gi31415801)4.45e-48Showinfo_outline
34389..4628PHAGE_Bacill_phBC6A51_NC_004820: holin; F8167_00015; phage(gi31415802)8.00e-46Showinfo_outline
44625..5689PHAGE_Bacill_phBC6A51_NC_004820: N-acetylmuramoyl-L-alanine amidase; F8167_00020; phage(gi31415803)0.0Showinfo_outline
5complement(5728..6000)PHAGE_Paenib_Jacopo_NC_048718: hypothetical protein; F8167_00025; phage(gi100029)5.29e-19Showinfo_outline
6complement(6033..6467)PHAGE_Geobac_E2_NC_009552: putative regulatory protein; F8167_00030; phage(gi148747786)1.02e-16Showinfo_outline
7complement(6610..6762)PHAGE_Bacill_Waukesha92_NC_025424: DNA binding protein; F8167_00035; phage(gi712912401)5.41e-26Showinfo_outline
8complement(6830..7156)PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00040; phage(gi31415805)4.03e-73Showinfo_outline
9complement(7233..7499)PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00045; phage(gi31415806)2.02e-50Showinfo_outline
107654..7776PHAGE_Bacill_Gamma_NC_007458: hypothetical protein; F8167_00050; phage(gi77020140)4.71e-14Showinfo_outline
11complement(8419..8610)PHAGE_Bacill_phBC6A51_NC_004820: Transcriptional regulator, PBSX family; F8167_00055; phage(gi31415807)5.72e-08Showinfo_outline
128774..9043PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00060; phage(gi31415808)1.20e-51Showinfo_outline
139040..9342PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00065; phage(gi31415809)1.87e-64Showinfo_outline
149339..9521PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00070; phage(gi31415810)4.82e-35Showinfo_outline
159637..10821PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00075; phage(gi31415815)0.0Showinfo_outline
1610763..11389PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00080; phage(gi31415811)2.53e-147Showinfo_outline
1711383..11568hypothetical protein; F8167_000850.0Showinfo_outline
1811627..11815hypothetical protein; F8167_000900.0Showinfo_outline
1911835..12050hypothetical protein; F8167_000950.0Showinfo_outline
2012282..12295attL0.0Showinfo_outline
2112361..13833PHAGE_Bacill_phBC6A51_NC_004820: Site-specific recombinase; F8167_00100; phage(gi31415812)0.0Showinfo_outline
22complement(13981..14325)PHAGE_Bacill_phBC6A51_NC_004820: Transcriptional regulator, MerR family; F8167_00105; phage(gi31415741)1.03e-75Showinfo_outline
2314761..15858PHAGE_Bacill_phBC6A51_NC_004820: Prophage helix-turn-helix protein; F8167_00110; phage(gi31415742)0.0Showinfo_outline
24complement(16310..16645)PHAGE_Bacill_phBC6A51_NC_004820: Transcriptional regulator; F8167_00115; phage(gi31415744)2.11e-72Showinfo_outline
2516759..16770attL0.0Showinfo_outline
2616818..17219PHAGE_Bacill_phBC6A51_NC_004820: Transcriptional regulator; F8167_00120; phage(gi31415745)8.73e-48Showinfo_outline
2717538..19094PHAGE_Bacill_phBC6A51_NC_004820: Exonuclease SbcC; F8167_00125; phage(gi31415746)0.0Showinfo_outline
2819108..19404PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00130; phage(gi31415747)2.30e-15Showinfo_outline
2919404..19637PHAGE_Bacill_phBC6A51_NC_004820: hypothetical Cytosolic Protein; F8167_00135; phage(gi31415748)6.55e-46Showinfo_outline
3019651..20286PHAGE_Bacill_phBC6A51_NC_004820: Chromosome segregation ATPases; F8167_00140; phage(gi31415749)4.28e-151Showinfo_outline
3120303..20680PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00145; phage(gi31415750)3.06e-74Showinfo_outline
3220680..21738PHAGE_Bacill_phBC6A51_NC_004820: Exonuclease SbcD; F8167_00150; phage(gi31415751)0.0Showinfo_outline
3321735..22025PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00155; phage(gi31415752)4.76e-19Showinfo_outline
3422018..22569PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00160; phage(gi31415753)8.24e-125Showinfo_outline
3522579..23097PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00165; phage(gi31415754)4.41e-122Showinfo_outline
3623181..24773PHAGE_Bacill_phBC6A51_NC_004820: DNA/RNA helicase (DEAD/DEAH box family); F8167_00170; phage(gi31415755)0.0Showinfo_outline
3724863..25141hypothetical protein; F8167_001750.0Showinfo_outline
3825141..25875PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00180; phage(gi31415756)6.30e-175Showinfo_outline
3925895..28981PHAGE_Bacill_phBC6A51_NC_004820: MCM domain family protein; F8167_00185; phage(gi31415757)0.0Showinfo_outline
4029005..31431PHAGE_Bacill_phBC6A51_NC_004820: DNA polymerase I; F8167_00190; phage(gi31415758)0.0Showinfo_outline
4131435..31707hypothetical protein; F8167_001950.0Showinfo_outline
4231670..31927PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00200; phage(gi31415759)3.27e-51Showinfo_outline
4331953..32318PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00205; phage(gi31415760)2.03e-65Showinfo_outline
4432335..32637PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00210; phage(gi31415761)4.36e-67Showinfo_outline
4532634..33173PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00215; phage(gi31415762)7.91e-69Showinfo_outline
4633188..33964PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00220; phage(gi31415763)0.0Showinfo_outline
4734158..34412PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00225; phage(gi31415764)2.36e-52Showinfo_outline
4834450..34866PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00230; phage(gi31415765)8.03e-74Showinfo_outline
4935066..35296PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00235; phage(gi31415768)5.56e-48Showinfo_outline
5035299..35886PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00240; phage(gi31415769)2.40e-141Showinfo_outline
5135919..36344PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00245; phage(gi31415770)5.23e-101Showinfo_outline
5236331..36975PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00250; phage(gi31415771)5.41e-158Showinfo_outline
5337169..37486PHAGE_Bacill_phBC6A51_NC_004820: Transglycosylase; F8167_00255; phage(gi31415773)3.58e-72Showinfo_outline
5437503..38444PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00260; phage(gi31415774)0.0Showinfo_outline
5538447..38593PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00265; phage(gi31415775)5.67e-25Showinfo_outline
5638719..38913PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00270; phage(gi31415776)2.78e-37Showinfo_outline
5738938..39318PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00275; phage(gi31415777)3.65e-79Showinfo_outline
5839315..39596PHAGE_Bacill_phBC6A51_NC_004820: Transcription state regulatory protein abrB; F8167_00280; phage(gi31415778)1.38e-58Showinfo_outline
5939598..39795PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00285; phage(gi31415779)5.26e-39Showinfo_outline
6039792..39989PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00290; phage(gi31415780)3.89e-23Showinfo_outline
6140019..40249hypothetical protein; F8167_002950.0Showinfo_outline
6240249..40776PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00300; phage(gi31415781)1.12e-112Showinfo_outline
6340773..40955PHAGE_Clostr_phiCT19406A_NC_030950: hypothetical protein; F8167_00305; phage(gi100021)1.20e-10Showinfo_outline
6440945..41295PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00310; phage(gi31415782)1.08e-70Showinfo_outline
6541531..41911PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00315; phage(gi31415783)3.30e-86Showinfo_outline
6642625..43053PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00320; phage(gi31415784)1.74e-97Showinfo_outline
6743070..44785PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00325; phage(gi31415785)0.0Showinfo_outline
6844802..46319PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00330; phage(gi31415786)0.0Showinfo_outline
6946378..47163PHAGE_Bacill_phBC6A51_NC_004820: Scaffold protein; F8167_00335; phage(gi31415787)6.15e-169Showinfo_outline
7047224..48348PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00340; phage(gi31415788)0.0Showinfo_outline
7148397..48621PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00345; phage(gi31415789)8.26e-46Showinfo_outline
7248650..48991PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00350; phage(gi31415790)5.02e-75Showinfo_outline
7348996..49802PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00355; phage(gi31415791)0.0Showinfo_outline
7449806..50180PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00360; phage(gi31415792)1.59e-78Showinfo_outline
7550180..50539PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00365; phage(gi31415793)1.73e-82Showinfo_outline
7650542..50949PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00370; phage(gi31415813)1.53e-92Showinfo_outline
7750963..51469PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00375; phage(gi31415794)4.21e-119Showinfo_outline
7851493..51852PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00380; phage(gi31415795)5.39e-79Showinfo_outline
7951839..52054PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00385; phage(gi31415796)9.49e-45Showinfo_outline
8052122..52499PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00390; phage(gi31415797)2.49e-87Showinfo_outline
8152589..52843PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00395; phage(gi31415798)3.28e-53Showinfo_outline
8252880..56776PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00400; phage(gi31415799)0.0Showinfo_outline
8356791..58287PHAGE_Staphy_SpaA1_NC_018277: phage tail fiber protein; F8167_00405; phage(gi399498880)0.0Showinfo_outline
8458284..61912PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00410; phage(gi31415800)0.0Showinfo_outline
8561923..62193PHAGE_Bacill_phBC6A51_NC_004820: N-acetylmuramoyl-L-alanine amidase; F8167_00415; phage(gi31415803)1.26e-47Showinfo_outline
8662310..62993hypothetical protein; F8167_004200.0Showinfo_outline
8762990..63193hypothetical protein; F8167_004250.0Showinfo_outline
88complement(63405..63602)PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; F8167_00430; phage(gi100025)7.89e-13Showinfo_outline
8963766..64068PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00435; phage(gi31415809)2.91e-36Showinfo_outline
9064071..64253PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00440; phage(gi31415810)5.66e-31Showinfo_outline
9164369..65550PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00445; phage(gi31415815)7.28e-109Showinfo_outline
9265492..66115PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_00450; phage(gi31415811)5.67e-129Showinfo_outline
93complement(66352..67905)PHAGE_Bacill_phBC6A51_NC_004820: Site-specific recombinase; F8167_00455; phage(gi31415812)1.05e-37Showinfo_outline
9468216..69835PHAGE_Campyl_CPX_NC_016562: putative DNA methylase; F8167_00460; phage(gi371670951)6.34e-39Showinfo_outline
9572629..72640attR0.0Showinfo_outline
9682778..82791attR0.0Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 249404 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download