Submission Results

Sequence Name: Not Available

GenBank Accession Number: WBPK01000007.1

GenInfo (GI) Number: 0000000000

Download Results: WBPK01000007.1.PHASTER.zip

gi|00000000|ref|WBPK01000007.1| Bacillus cereus strain CH372_12D 189999, gc%: 35.87%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 0 regions are intact, 0 regions are incomplete, and 1 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
141.8Kbquestionable705827329-69207 info_outlinePHAGE_Bacill_phBC6A52_NC_004821(23)34.88%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|WBPK01000007.1| Bacillus cereus strain CH372_12D 189999, gc%: 35.87%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 61 CDS

#CDS PositionBLAST HitE-ValueSequence
127329..27346attL0.0Showinfo_outline
2complement(28659..29540)PHAGE_Bacill_WBeta_NC_007734: conserved phage protein; F8167_07425; phage(gi85701405)1.98e-12Showinfo_outline
329621..30082DUF523 domain-containing protein; F8167_074300.0Showinfo_outline
430405..31232PHAGE_Bacill_BCU4_NC_047735: ribonucleoside diphosphate reductase small subunit; F8167_07435; phage(gi100199)2.14e-112Showinfo_outline
5complement(31242..31862)PHAGE_Bacill_phIS3501_NC_019502: phage protein; F8167_07440; phage(gi422934347)5.41e-147Showinfo_outline
6complement(31804..32985)PHAGE_Bacill_phIS3501_NC_019502: FtsK/SpoIIIE family phage protein; F8167_07445; phage(gi422934346)0.0Showinfo_outline
7complement(33101..33283)PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_07450; phage(gi31415810)2.16e-29Showinfo_outline
8complement(33280..33597)PHAGE_Bacill_phIS3501_NC_019502: phage protein; F8167_07455; phage(gi422934345)1.15e-69Showinfo_outline
933780..33977PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; F8167_07460; phage(gi100025)9.51e-28Showinfo_outline
1033986..34165PHAGE_Bacill_Gamma_NC_007458: hypothetical protein; F8167_07465; phage(gi77020185)8.07e-07Showinfo_outline
1134171..34749PHAGE_Bacill_phIS3501_NC_019502: phage protein; F8167_07470; phage(gi422934344)1.01e-126Showinfo_outline
1234803..35141hypothetical protein; F8167_074750.0Showinfo_outline
13complement(35337..36155)PHAGE_Bacill_phBC6A52_NC_004821: N-acetylmuramoyl-L-alanine amidase; F8167_07480; phage(gi31415865)0.0Showinfo_outline
14complement(36155..36580)PHAGE_Bacill_phBC6A52_NC_004821: holin; F8167_07485; phage(gi31415864)3.26e-89Showinfo_outline
15complement(36630..37919)PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; F8167_07490; phage(gi31415863)0.0Showinfo_outline
16complement(37934..40276)PHAGE_Bacill_phBC6A52_NC_004821: endopeptidase; F8167_07495; phage(gi31415861)0.0Showinfo_outline
17complement(40273..40956)PHAGE_Bacill_phBC6A52_NC_004821: Gp13 protein; F8167_07500; phage(gi31415860)4.41e-158Showinfo_outline
18complement(40957..44481)PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; F8167_07505; phage(gi31415859)0.0Showinfo_outline
19complement(44498..44686)PHAGE_Lactob_PLE2_NC_031036: hypothetical protein; F8167_07510; phage(gi100013)3.59e-12Showinfo_outline
20complement(44725..45111)PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; F8167_07515; phage(gi31415858)2.10e-70Showinfo_outline
21complement(45123..45758)PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; F8167_07520; phage(gi31415857)5.75e-149Showinfo_outline
22complement(45770..46147)PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; F8167_07525; phage(gi31415856)1.29e-81Showinfo_outline
23complement(46147..46476)PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; F8167_07530; phage(gi31415855)7.12e-65Showinfo_outline
24complement(46466..46795)PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; F8167_07535; phage(gi31415854)1.58e-65Showinfo_outline
25complement(46776..47036)PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; F8167_07540; phage(gi31415853)3.04e-42Showinfo_outline
26complement(47038..48348)PHAGE_Bacill_phBC6A52_NC_004821: prohead protease; F8167_07545; phage(gi31415852)0.0Showinfo_outline
27complement(48350..48931)PHAGE_Bacill_phBC6A52_NC_004821: prohead protease; F8167_07550; phage(gi31415851)1.97e-134Showinfo_outline
2849004..49261hypothetical protein; F8167_075550.0Showinfo_outline
29complement(49155..49427)hypothetical protein; F8167_075600.0Showinfo_outline
30complement(49430..50602)PHAGE_Bacill_phBC6A52_NC_004821: Portal protein; F8167_07565; phage(gi31415850)0.0Showinfo_outline
31complement(50641..50856)hypothetical protein; F8167_075700.0Showinfo_outline
32complement(50856..51068)PHAGE_Bacill_JL_NC_028982: hypothetical protein; F8167_07575; phage(gi971762828)3.72e-36Showinfo_outline
33complement(51083..52807)PHAGE_Bacill_phBC6A52_NC_004821: Terminase large subunit; F8167_07580; phage(gi31415848)0.0Showinfo_outline
34complement(52804..53229)PHAGE_Bacill_phBC6A52_NC_004821: Terminase small subunit; F8167_07585; phage(gi31415847)3.77e-96Showinfo_outline
35complement(53312..53704)PHAGE_Bacill_phBC6A52_NC_004821: endonuclease; F8167_07590; phage(gi31415846)3.77e-90Showinfo_outline
36complement(53701..54033)PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; F8167_07595; phage(gi31415845)1.83e-28Showinfo_outline
37complement(54030..54248)hypothetical protein; F8167_076000.0Showinfo_outline
38complement(54289..54492)PHAGE_Bacill_BMBtpLA_NC_028748: hypothetical protein; F8167_07605; phage(gi971482546)7.62e-15Showinfo_outline
39complement(54577..54972)PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; F8167_07610; phage(gi31415843)4.42e-07Showinfo_outline
40complement(55161..55568)PHAGE_Bacill_WBeta_NC_007734: conserved phage protein; F8167_07615; phage(gi85701424)9.60e-60Showinfo_outline
41complement(55597..55791)PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; F8167_07620; phage(gi31415833)5.57e-10Showinfo_outline
42complement(55788..55910)PHAGE_Bacill_Gamma_NC_007458: conserved phage protein; F8167_07625; phage(gi77020188)1.36e-06Showinfo_outline
43complement(56054..56239)PHAGE_Bacill_BceA1_NC_048628: exonuclease; F8167_07630; phage(gi100048)3.40e-15Showinfo_outline
44complement(56322..56720)PHAGE_Bacill_BCP8_2_NC_027355: hypothetical protein; F8167_07635; phage(gi849253082)1.76e-90Showinfo_outline
45complement(56977..57723)PHAGE_Bacill_WBeta_NC_007734: putative RNA polymerase sigma subunit; F8167_07640; phage(gi85701416)2.58e-130Showinfo_outline
46complement(57720..57950)PHAGE_Bacill_WBeta_NC_007734: hypothetical protein; F8167_07645; phage(gi85701415)1.11e-22Showinfo_outline
47complement(57950..58831)PHAGE_Bacill_BM5_NC_029069: hypothetical protein; F8167_07650; phage(gi985757818)1.19e-33Showinfo_outline
48complement(58843..59646)PHAGE_Staphy_37_NC_007055: ORF012; F8167_07655; phage(gi66395741)3.53e-29Showinfo_outline
49complement(59643..59993)PHAGE_Bacill_vB_BhaS_171_NC_030904: tail fiber protein; F8167_07660; phage(gi100052)5.33e-28Showinfo_outline
50complement(60126..61007)hypothetical protein; F8167_076650.0Showinfo_outline
51complement(61031..61702)PHAGE_Bacill_BMBtpLA_NC_028748: hypothetical protein; F8167_07670; phage(gi971482519)4.38e-41Showinfo_outline
52complement(61912..62100)PHAGE_Bacill_BceA1_NC_048628: hypothetical protein; F8167_07675; phage(gi100035)8.51e-23Showinfo_outline
53complement(62245..62490)hypothetical protein; F8167_076800.0Showinfo_outline
5462739..63068PHAGE_Bacill_phIS3501_NC_019502: transcriptional regulator XRE family protein; F8167_07685; phage(gi422934302)1.01e-71Showinfo_outline
55complement(63494..64747)PHAGE_Bacill_phBC6A52_NC_004821: helix-turn-helix protein; F8167_07690; phage(gi31415822)6.36e-06Showinfo_outline
56complement(64894..65124)PHAGE_Bacill_phIS3501_NC_019502: hypothetical protein; F8167_07695; phage(gi422934300)8.94e-43Showinfo_outline
57complement(65296..65505)PHAGE_Bacill_phIS3501_NC_019502: hypothetical protein; F8167_07700; phage(gi422934299)7.71e-26Showinfo_outline
5865719..65792tRNA0.0Showinfo_outline
5966089..67150PHAGE_Bacill_phIS3501_NC_019502: phage integrase; F8167_07710; phage(gi422934298)0.0Showinfo_outline
60complement(67240..67593)PHAGE_Paenib_Harrison_NC_028746: cytoplasmic protein; F8167_07715; phage(gi971482389)4.02e-18Showinfo_outline
6169207..69224attR0.0Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

Viewer Options
Length: 189999 bps
Phages: 1
arrow_upwardarrow_upwardarrow_upward
Click on a region in the genome above to show details here.
Viewer Options
Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download