Submission Results

Sequence Name: Not Available

GenBank Accession Number: WBPK01000050.1

GenInfo (GI) Number: 0000000000

Download Results: WBPK01000050.1.PHASTER.zip

gi|00000000|ref|WBPK01000050.1| Bacillus cereus strain CH372_12D 484239, gc%: 35.65%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
154.5Kbintact15069222135-276637 info_outlinePHAGE_Bacill_PfEFR_4_NC_048641(13)34.57%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|WBPK01000050.1| Bacillus cereus strain CH372_12D 484239, gc%: 35.65%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 73 CDS

#CDS PositionBLAST HitE-ValueSequence
1222135..222146attL0.0Showinfo_outline
2complement(225611..226117)PHAGE_Bacill_G_NC_023719: gp631; F8167_29320; phage(gi593778073)1.14e-16Showinfo_outline
3complement(226248..226421)50S ribosomal protein L32; F8167_293250.0Showinfo_outline
4complement(226483..226983)DUF177 domain-containing protein; F8167_293300.0Showinfo_outline
5complement(227268..227885)PHAGE_Bacill_phIS3501_NC_019502: phage protein; F8167_29335; phage(gi422934347)1.60e-90Showinfo_outline
6complement(227827..229008)PHAGE_Bacill_phIS3501_NC_019502: FtsK/SpoIIIE family phage protein; F8167_29340; phage(gi422934346)0.0Showinfo_outline
7complement(229126..229308)PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_29345; phage(gi31415810)6.48e-30Showinfo_outline
8complement(229311..229613)PHAGE_Bacill_phIS3501_NC_019502: phage protein; F8167_29350; phage(gi422934345)1.69e-42Showinfo_outline
9229776..229982PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; F8167_29355; phage(gi100025)8.28e-25Showinfo_outline
10complement(230175..231107)PHAGE_Bacill_Waukesha92_NC_025424: endolysin; F8167_29360; phage(gi712912403)0.0Showinfo_outline
11complement(231107..231532)PHAGE_Bacill_phIS3501_NC_019502: holin; F8167_29365; phage(gi422934342)1.42e-89Showinfo_outline
12complement(231548..232507)PHAGE_Bacill_BtCS33_NC_018085: site-specific recombinase; F8167_29370; phage(gi392972725)0.0Showinfo_outline
13complement(232856..233560)hypothetical protein; F8167_293750.0Showinfo_outline
14233641..233653attL0.0Showinfo_outline
15complement(233869..234469)PHAGE_Bacill_phBC6A51_NC_004820: N-acetylmuramoyl-L-alanine amidase; F8167_29380; phage(gi31415803)1.12e-144Showinfo_outline
16complement(234466..234705)PHAGE_Bacill_phBC6A51_NC_004820: holin; F8167_29385; phage(gi31415802)1.07e-45Showinfo_outline
17complement(234705..234941)PHAGE_Bacill_phIS3501_NC_019502: phage protein; F8167_29390; phage(gi422934341)4.51e-19Showinfo_outline
18complement(235033..235575)PHAGE_Bacill_phIS3501_NC_019502: phage minor structural protein; F8167_29395; phage(gi422934340)1.17e-109Showinfo_outline
19complement(235961..240878)PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8167_29400; phage(gi31415800)0.0Showinfo_outline
20complement(240875..242350)PHAGE_Bacill_phi4J1_NC_029008: distal tail protein; F8167_29405; phage(gi971821575)0.0Showinfo_outline
21complement(242392..244758)PHAGE_Bacill_250_NC_029024: carbamoyl-phosphate synthase large subunit; F8167_29410; phage(gi971766620)9.26e-99Showinfo_outline
22complement(244977..246155)PHAGE_Clostr_phiCD111_NC_028905: Tail tape measure; F8167_29415; phage(gi971820061)1.99e-12Showinfo_outline
23complement(246964..247605)PHAGE_Lactoc_bIL285_NC_002666: tail protein; F8167_29420; phage(gi13095732)7.69e-38Showinfo_outline
24complement(247841..248185)PHAGE_Bacill_1_NC_009737: hypothetical protein; F8167_29425; phage(gi155042944)3.12e-41Showinfo_outline
25complement(248192..248785)PHAGE_Geobac_GBSV1_NC_008376: major tail protein; F8167_29430; phage(gi115334636)7.51e-53Showinfo_outline
26complement(248786..249115)PHAGE_Geobac_GBSV1_NC_008376: aminopeptidase; F8167_29435; phage(gi115334635)1.58e-29Showinfo_outline
27complement(249112..249486)PHAGE_Geobac_GBSV1_NC_008376: hypothetical protein; F8167_29440; phage(gi115334634)2.76e-49Showinfo_outline
28complement(249513..249866)PHAGE_Geobac_E2_NC_009552: putative head-tail adaptor; F8167_29445; phage(gi148747735)2.68e-24Showinfo_outline
29complement(249868..250161)PHAGE_Lister_LP_HM00113468_NC_049900: tail tip protein; F8167_29450; phage(gi100054)7.16e-18Showinfo_outline
30complement(250167..251321)PHAGE_Lister_LP_101_NC_024387: major capsid protein; F8167_29455; phage(gi658607815)2.52e-92Showinfo_outline
31complement(251325..252068)PHAGE_Staphy_phi2958PVL_NC_011344: prohead protease; F8167_29460; phage(gi209363589)5.04e-38Showinfo_outline
32complement(252068..253213)PHAGE_Lister_LP_101_NC_024387: portal protein; F8167_29465; phage(gi658607813)6.02e-110Showinfo_outline
33complement(253222..254889)PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; F8167_29470; phage(gi100006)0.0Showinfo_outline
34complement(254886..255197)PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; F8167_29475; phage(gi100005)6.57e-26Showinfo_outline
35complement(255320..255655)PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; F8167_29480; phage(gi100004)2.47e-37Showinfo_outline
36complement(255658..255885)PHAGE_Bacill_phi4B1_NC_028886: hypothetical protein; F8167_29485; phage(gi971821249)1.13e-09Showinfo_outline
37complement(255890..256228)PHAGE_Bacill_PfEFR_4_NC_048641: capsid decoration protein; F8167_29490; phage(gi100066)1.64e-08Showinfo_outline
38complement(256221..256475)hydrolase; F8167_294950.0Showinfo_outline
39complement(256611..256823)PHAGE_Bacill_phIS3501_NC_019502: phage protein; F8167_29500; phage(gi422934324)6.38e-43Showinfo_outline
40complement(256827..257153)PHAGE_Bacill_BMBtpLA_NC_028748: hypothetical protein; F8167_29505; phage(gi971482475)1.36e-37Showinfo_outline
41complement(257207..257956)PHAGE_Geobac_E3_NC_029073: putative DNA cytosine methylase; F8167_29510; phage(gi985758487)9.96e-100Showinfo_outline
42complement(258740..259282)PHAGE_Bacill_phIS3501_NC_019502: site-specific phage integrase; F8167_29515; phage(gi422934319)1.11e-115Showinfo_outline
43complement(259282..259720)ArpU family transcriptional regulator; F8167_295200.0Showinfo_outline
44complement(260169..260405)hypothetical protein; F8167_295250.0Showinfo_outline
45complement(260647..260745)PHAGE_Bacill_phIS3501_NC_019502: ArpU family phage transcriptional regulator; F8167_29530; phage(gi422934318)2.14e-13Showinfo_outline
46complement(261059..261181)PHAGE_Bacill_Gamma_NC_007458: conserved phage protein; F8167_29535; phage(gi77020188)1.72e-05Showinfo_outline
47complement(261211..261573)hypothetical protein; F8167_295400.0Showinfo_outline
48complement(261699..261926)hypothetical protein; F8167_295450.0Showinfo_outline
49complement(262022..262249)hypothetical protein; F8167_295500.0Showinfo_outline
50complement(262282..263037)PHAGE_Paenib_Harrison_NC_028746: DNA-cytosine methyltransferase; F8167_29555; phage(gi971482382)1.97e-80Showinfo_outline
51complement(263213..263401)PHAGE_Bacill_Shbh1_NC_030925: holin; F8167_29560; phage(gi100034)7.08e-15Showinfo_outline
52complement(263433..264066)PHAGE_Paenib_Jacopo_NC_048718: tail length tape-measure protein; F8167_29565; phage(gi100057)2.91e-16Showinfo_outline
53264611..264623attR0.0Showinfo_outline
54complement(265007..265315)PHAGE_Bacill_phIS3501_NC_019502: hypothetical protein; F8167_29570; phage(gi422934313)2.86e-69Showinfo_outline
55complement(265473..265853)PHAGE_Bacill_SP_10_NC_019487: hypothetical protein; F8167_29575; phage(gi418489460)2.20e-30Showinfo_outline
56complement(265912..266103)PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; F8167_29580; phage(gi31415833)9.61e-30Showinfo_outline
57complement(266121..266594)PHAGE_Bacill_250_NC_029024: hypothetical protein; F8167_29585; phage(gi971766652)5.25e-28Showinfo_outline
58complement(266603..266857)PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; F8167_29590; phage(gi100014)1.33e-47Showinfo_outline
59complement(266872..267045)PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; F8167_29595; phage(gi100040)1.55e-29Showinfo_outline
60complement(267070..267264)PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; F8167_29600; phage(gi100012)4.78e-29Showinfo_outline
61267345..267569PHAGE_Staphy_AJ_2017_NC_048644: tail assembly protein; F8167_29605; phage(gi100053)8.16e-16Showinfo_outline
62complement(267566..267769)hypothetical protein; F8167_296100.0Showinfo_outline
63complement(267786..268661)PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; F8167_29615; phage(gi31415829)0.0Showinfo_outline
64complement(268600..269391)PHAGE_Bacill_phBC6A52_NC_004821: replication protein; F8167_29620; phage(gi31415828)3.38e-112Showinfo_outline
65complement(269766..270116)PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; F8167_29625; phage(gi100039)1.34e-06Showinfo_outline
66complement(270161..270892)PHAGE_Bacill_PfEFR_5_NC_031055: holin; F8167_29630; phage(gi100034)3.01e-166Showinfo_outline
67complement(270958..271161)PHAGE_Bacill_PfEFR_4_NC_048641: u-spanin; F8167_29635; phage(gi100032)2.08e-20Showinfo_outline
68271360..271707PHAGE_Bacill_Waukesha92_NC_025424: transcriptional regulator; F8167_29640; phage(gi712912388)3.74e-46Showinfo_outline
69complement(272148..273287)PHAGE_Bacill_phIS3501_NC_019502: helix-turn-helix protein; F8167_29645; phage(gi422934301)9.14e-78Showinfo_outline
70273812..274159PHAGE_Bacill_phBC6A51_NC_004820: Transcriptional regulator, MerR family; F8167_29650; phage(gi31415741)5.68e-20Showinfo_outline
71274352..275215hypothetical protein; F8167_296550.0Showinfo_outline
72275333..275344attR0.0Showinfo_outline
73275513..276637PHAGE_Paenib_Jacopo_NC_048718: hypothetical protein; F8167_29660; phage(gi100036)3.67e-87Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 484239 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download