Submission Results

Sequence Name: Not Available

GenBank Accession Number: WBPM01000001.1

GenInfo (GI) Number: 0000000000

Download Results: WBPM01000001.1.PHASTER.zip

gi|00000000|ref|WBPM01000001.1| Bacillus cereus strain CH436b_13D 53469, gc%: 36.67%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
153Kbintact12075405-53469 info_outlinePHAGE_Bacill_IEBH_NC_011167(37)36.66%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|WBPM01000001.1| Bacillus cereus strain CH436b_13D 53469, gc%: 36.67%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 75 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(405..5111)PHAGE_Bacill_250_NC_029024: phage minor structural protein; F8169_00010; phage(gi971766619)0.0Showinfo_outline
2complement(5111..6589)PHAGE_Bacill_250_NC_029024: phage putative tail component; F8169_00015; phage(gi971766621)0.0Showinfo_outline
3complement(6638..10390)PHAGE_Bacill_250_NC_029024: carbamoyl-phosphate synthase large subunit; F8169_00020; phage(gi971766620)0.0Showinfo_outline
4complement(10383..11051)PHAGE_Bacill_250_NC_029024: gp15; F8169_00025; phage(gi971766638)7.73e-133Showinfo_outline
5complement(11063..11467)PHAGE_Bacill_250_NC_029024: gp14-like protein; F8169_00030; phage(gi971766655)1.15e-59Showinfo_outline
6complement(11550..11993)PHAGE_Bacill_250_NC_029024: major capsid protein; F8169_00035; phage(gi971766650)1.54e-79Showinfo_outline
7complement(11998..12417)PHAGE_Bacill_250_NC_029024: hypothetical protein; F8169_00040; phage(gi971766649)6.69e-86Showinfo_outline
8complement(12429..12779)PHAGE_Bacill_250_NC_029024: hypothetical protein; F8169_00045; phage(gi971766668)3.35e-58Showinfo_outline
9complement(12776..13132)PHAGE_Bacill_250_NC_029024: gp9 protein; F8169_00050; phage(gi971766664)4.74e-81Showinfo_outline
10complement(13129..13530)PHAGE_Bacill_250_NC_029024: gp8 protein; F8169_00055; phage(gi971766656)9.18e-86Showinfo_outline
11complement(13539..13778)PHAGE_Bacill_IEBH_NC_011167: hypothetical protein; F8169_00060; phage(gi197261564)5.26e-38Showinfo_outline
12complement(13832..14728)PHAGE_Bacill_250_NC_029024: major capsid protein; F8169_00065; phage(gi971766631)0.0Showinfo_outline
13complement(14803..15453)PHAGE_Bacill_250_NC_029024: hypothetical protein; F8169_00070; phage(gi971766639)9.41e-117Showinfo_outline
14complement(15465..16592)PHAGE_Bacill_250_NC_029024: gp4-like protein; F8169_00075; phage(gi971766637)4.25e-164Showinfo_outline
15complement(16596..18110)PHAGE_Bacill_250_NC_029024: phage portal protein; F8169_00080; phage(gi971766622)0.0Showinfo_outline
16complement(18121..19398)PHAGE_Bacill_250_NC_029024: phage terminase large subunit; F8169_00085; phage(gi971766625)0.0Showinfo_outline
17complement(19379..20320)PHAGE_Bacill_IEBH_NC_011167: terminase small subunit; F8169_00090; phage(gi197261558)0.0Showinfo_outline
18complement(20471..20686)PHAGE_Bacill_PfEFR_5_NC_031055: capsid decoration protein; F8169_00095; phage(gi100066)1.74e-21Showinfo_outline
19complement(20883..21131)hypothetical protein; F8169_001000.0Showinfo_outline
20complement(21408..21761)PHAGE_Bacill_BCU4_NC_047735: deoxynucleoside kinase; F8169_00105; phage(gi100082)6.18e-54Showinfo_outline
21complement(21897..22241)PHAGE_Bacill_CampHawk_NC_022761: hypothetical protein; F8169_00110; phage(gi557478958)1.82e-32Showinfo_outline
22complement(23610..23954)PHAGE_Bacill_Moonbeam_NC_027374: hypothetical protein; F8169_00115; phage(gi100011)1.38e-05Showinfo_outline
23complement(24004..24390)PHAGE_Bacill_250_NC_029024: hypothetical protein; F8169_00120; phage(gi971766657)1.65e-21Showinfo_outline
24complement(24531..24719)PHAGE_Bacill_IEBH_NC_011167: hypothetical protein; F8169_00125; phage(gi197261548)1.23e-25Showinfo_outline
25complement(24716..25132)PHAGE_Thermu_OH2_NC_021784: endodeoxyribonuclease RusA; F8169_00130; phage(gi526118343)2.74e-61Showinfo_outline
26complement(25166..25450)hypothetical protein; F8169_001350.0Showinfo_outline
27complement(25958..26149)PHAGE_Bacill_phiNIT1_NC_021856: hypothetical protein; F8169_00140; phage(gi526118538)4.92e-08Showinfo_outline
28complement(26187..26855)CopG family transcriptional regulator; F8169_001450.0Showinfo_outline
29complement(26933..27397)PHAGE_Strept_phiARI0746_NC_031907: hypothetical protein; F8169_00150; phage(gi100028)1.03e-35Showinfo_outline
30complement(27306..27848)PHAGE_Clostr_CDKM15_NC_048643: head morphogenesis protein; F8169_00155; phage(gi100068)9.17e-70Showinfo_outline
31complement(28317..28715)PHAGE_Bacill_phiCM3_NC_023599: hypothetical protein; F8169_00160; phage(gi589892757)5.53e-69Showinfo_outline
32complement(28750..28995)hypothetical protein; F8169_001650.0Showinfo_outline
33complement(29032..29406)hypothetical protein; F8169_001700.0Showinfo_outline
34complement(29410..29811)PHAGE_Bacill_BMBtpLA_NC_028748: hypothetical protein; F8169_00175; phage(gi971482532)3.51e-23Showinfo_outline
35complement(30037..30540)PHAGE_Aeriba_AP45_NC_048651: hypothetical protein; F8169_00180; phage(gi100019)6.42e-27Showinfo_outline
36complement(30732..30980)PHAGE_Bacill_IEBH_NC_011167: hypothetical protein; F8169_00185; phage(gi197261530)1.67e-48Showinfo_outline
37complement(31047..31241)PHAGE_Bacill_IEBH_NC_011167: hypothetical protein; F8169_00190; phage(gi197261528)7.28e-36Showinfo_outline
38complement(31238..31618)PHAGE_Lactob_Lrm1_NC_011104: hypothetical protein; F8169_00195; phage(gi195661248)2.30e-14Showinfo_outline
39complement(31605..31745)PHAGE_Bacill_IEBH_NC_011167: hypothetical protein; F8169_00200; phage(gi197261527)1.88e-14Showinfo_outline
40complement(31754..32161)PHAGE_Bacill_250_NC_029024: hypothetical protein; F8169_00205; phage(gi971766653)5.98e-43Showinfo_outline
41complement(32158..32712)PHAGE_Bacill_250_NC_029024: hypothetical protein; F8169_00210; phage(gi971766652)4.23e-25Showinfo_outline
42complement(32723..32989)PHAGE_Bacill_phiCM3_NC_023599: hypothetical protein; F8169_00215; phage(gi589892751)1.22e-35Showinfo_outline
43complement(32986..33273)PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; F8169_00220; phage(gi100042)3.42e-51Showinfo_outline
44complement(33188..33451)PHAGE_Bacill_IEBH_NC_011167: hypothetical protein; F8169_00225; phage(gi197261521)4.72e-27Showinfo_outline
45complement(33464..34345)PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; F8169_00230; phage(gi31415829)1.06e-111Showinfo_outline
46complement(34662..35213)PHAGE_Bacill_phIS3501_NC_019502: phage replication protein DnaD; F8169_00235; phage(gi422934307)4.36e-105Showinfo_outline
47complement(35214..35435)PHAGE_Bacill_250_NC_029024: hypothetical protein; F8169_00240; phage(gi971766671)4.74e-05Showinfo_outline
48complement(35435..35620)PHAGE_Bacill_IEBH_NC_011167: hypothetical protein; F8169_00245; phage(gi197261516)4.12e-12Showinfo_outline
49complement(35635..36309)PHAGE_Bacill_phi4B1_NC_028886: Erf family protein; F8169_00250; phage(gi971821254)1.57e-94Showinfo_outline
50complement(36302..36487)hypothetical protein; F8169_002550.0Showinfo_outline
51complement(36683..36883)PHAGE_Bacill_BM5_NC_029069: hypothetical protein; F8169_00260; phage(gi985757872)1.41e-08Showinfo_outline
52complement(37120..37308)PHAGE_Bacill_phiNIT1_NC_021856: hypothetical protein; F8169_00265; phage(gi526118538)2.35e-08Showinfo_outline
53complement(37577..38335)PHAGE_Lactob_phiAT3_NC_005893: putative antirepressor protein; F8169_00270; phage(gi48697283)1.06e-65Showinfo_outline
54complement(38422..38616)PHAGE_Thermu_OH2_NC_021784: immunity repressor protein (phage-like protein); F8169_00275; phage(gi526118362)9.27e-09Showinfo_outline
5538814..39173PHAGE_Bacill_250_NC_029024: helix-turn-helix domain protein; F8169_00280; phage(gi971766654)4.82e-15Showinfo_outline
56complement(39672..40871)PHAGE_Bacill_250_NC_029024: helix-turn-helix domain protein; F8169_00285; phage(gi971766626)3.35e-35Showinfo_outline
5741387..41731PHAGE_Bacill_phBC6A51_NC_004820: Transcriptional regulator, MerR family; F8169_00290; phage(gi31415741)3.52e-26Showinfo_outline
5841935..42192hypothetical protein; F8169_002950.0Showinfo_outline
5942345..43049PHAGE_Bacill_250_NC_029024: hypothetical protein; F8169_00300; phage(gi971766642)1.93e-62Showinfo_outline
6043111..43806hypothetical protein; F8169_003050.0Showinfo_outline
61complement(44026..44292)PHAGE_Bacill_250_NC_029024: hypothetical protein; F8169_00310; phage(gi971766669)1.72e-52Showinfo_outline
6245277..45705helix-turn-helix domain-containing protein; F8169_003150.0Showinfo_outline
6345726..46385PHAGE_Bacill_BMBtpLA_NC_028748: hypothetical protein; F8169_00320; phage(gi971482507)1.56e-60Showinfo_outline
6446502..47032PHAGE_Bacill_Deep_Purple_NC_048667: hypothetical protein; F8169_00325; phage(gi100007)8.28e-26Showinfo_outline
6547067..47783hypothetical protein; F8169_003300.0Showinfo_outline
6647904..48734hypothetical protein; F8169_003350.0Showinfo_outline
6748906..49937PHAGE_Bacill_250_NC_029024: hypothetical protein; F8169_00340; phage(gi971766628)0.0Showinfo_outline
6849903..50235PHAGE_Bacill_250_NC_029024: hypothetical protein; F8169_00345; phage(gi971766667)1.74e-45Showinfo_outline
6950364..50744PHAGE_Bacill_250_NC_029024: hypothetical protein; F8169_00350; phage(gi971766659)6.31e-73Showinfo_outline
7050754..51284PHAGE_Bacill_250_NC_029024: hypothetical protein; F8169_00355; phage(gi971766645)2.21e-120Showinfo_outline
7151388..51615PHAGE_Bacill_BMBtpLA_NC_028748: hypothetical protein; F8169_00360; phage(gi971482502)2.63e-09Showinfo_outline
7251630..51899hypothetical protein; F8169_003650.0Showinfo_outline
7351981..52334PHAGE_Staphy_phiRS7_NC_022914: YolD-like protein; F8169_00370; phage(gi560185985)9.16e-14Showinfo_outline
74complement(52366..53301)PHAGE_Bacill_Waukesha92_NC_025424: endolysin; F8169_00375; phage(gi712912403)0.0Showinfo_outline
75complement(53301..53469)PHAGE_Bacill_phIS3501_NC_019502: holin; F8169_00380; phage(gi422934342)2.33e-32Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 53469 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download