Submission Results

Sequence Name: Not Available

GenBank Accession Number: WBPM01000005.1

GenInfo (GI) Number: 0000000000

Download Results: WBPM01000005.1.PHASTER.zip

gi|00000000|ref|WBPM01000005.1| Bacillus cereus strain CH436b_13D 370461, gc%: 32.89%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
155.7Kbintact13051121543-177254 info_outlinePHAGE_Lister_2389_NC_003291(14)33.29%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|WBPM01000005.1| Bacillus cereus strain CH436b_13D 370461, gc%: 32.89%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 57 CDS

#CDS PositionBLAST HitE-ValueSequence
1121543..121555attL0.0Showinfo_outline
2123881..123893attL0.0Showinfo_outline
3complement(125903..126835)PHAGE_Bacill_Waukesha92_NC_025424: endolysin; F8169_04075; phage(gi712912403)0.0Showinfo_outline
4complement(126852..127082)PHAGE_Bacill_Waukesha92_NC_025424: SPP1 family holin; F8169_04080; phage(gi712912404)1.20e-45Showinfo_outline
5complement(127125..127364)PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; F8169_04085; phage(gi100073)7.33e-51Showinfo_outline
6complement(127445..128626)PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; F8169_04090; phage(gi31415863)1.57e-152Showinfo_outline
7complement(128641..131046)PHAGE_Bacill_phBC6A52_NC_004821: endopeptidase; F8169_04095; phage(gi31415861)0.0Showinfo_outline
8complement(131046..131729)PHAGE_Bacill_phBC6A52_NC_004821: Gp13 protein; F8169_04100; phage(gi31415860)7.08e-126Showinfo_outline
9complement(131731..134571)PHAGE_Bacill_IEBH_NC_011167: carbamoyl-phosphate synthase large subunit; F8169_04105; phage(gi197261572)1.03e-98Showinfo_outline
10complement(134795..135052)PHAGE_Clostr_phiCD111_NC_028905: Tail tape measure; F8169_04110; phage(gi971820061)6.46e-08Showinfo_outline
11135273..135284attL0.0Showinfo_outline
12complement(135308..136888)PHAGE_Lister_2389_NC_003291: tail tape measure protein; F8169_04115; phage(gi17488515)4.86e-44Showinfo_outline
13complement(137067..137528)hypothetical protein; F8169_041200.0Showinfo_outline
14complement(137600..138184)PHAGE_Lister_2389_NC_003291: major tail protein a; F8169_04125; phage(gi17488513)2.97e-49Showinfo_outline
15complement(138185..138613)PHAGE_Lister_2389_NC_003291: Gp9 protein; F8169_04130; phage(gi17488512)1.56e-14Showinfo_outline
16complement(138600..138977)hypothetical protein; F8169_041350.0Showinfo_outline
17complement(138994..139350)PHAGE_Lister_LP_030_2_NC_021539: putative head-tail adapter; F8169_04140; phage(gi514051940)1.17e-13Showinfo_outline
18complement(139331..139627)PHAGE_Lister_LP_030_2_NC_021539: putative head-tail connector protein; F8169_04145; phage(gi514051939)1.23e-15Showinfo_outline
19complement(139620..139766)hypothetical protein; F8169_041500.0Showinfo_outline
20complement(139768..140931)PHAGE_Lister_2389_NC_003291: major capsid protein a; F8169_04155; phage(gi17488508)2.30e-105Showinfo_outline
21complement(140974..141687)PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; F8169_04160; phage(gi100008)1.64e-66Showinfo_outline
22complement(141668..142840)PHAGE_Clostr_phiCD6356_NC_015262: putative phage portal protein; F8169_04165; phage(gi326536850)1.19e-93Showinfo_outline
23complement(142855..144474)PHAGE_Clostr_phiCD6356_NC_015262: putative terminase large subunit; F8169_04170; phage(gi326536849)3.95e-155Showinfo_outline
24complement(144518..144838)PHAGE_Clostr_phiCD6356_NC_015262: putative terminase small subunit; F8169_04175; phage(gi326536848)1.19e-12Showinfo_outline
25complement(144943..145251)hypothetical protein; F8169_041800.0Showinfo_outline
26complement(145248..145796)PHAGE_Lactob_phiAQ113_NC_019782: HNH endonuclease; F8169_04185; phage(gi446730230)5.35e-47Showinfo_outline
27complement(145796..145990)PHAGE_Lister_LP_030_2_NC_021539: HNH homing endonuclease; F8169_04190; phage(gi514051998)8.51e-14Showinfo_outline
28complement(146104..146355)hypothetical protein; F8169_041950.0Showinfo_outline
29complement(146360..146584)PHAGE_Bacill_phi4B1_NC_028886: hypothetical protein; F8169_04200; phage(gi971821297)4.77e-05Showinfo_outline
30complement(146571..146933)hypothetical protein; F8169_042050.0Showinfo_outline
31complement(146998..147240)hypothetical protein; F8169_042100.0Showinfo_outline
32complement(147843..148385)PHAGE_Bacill_BtCS33_NC_018085: integrase; F8169_04215; phage(gi392972759)1.17e-68Showinfo_outline
33complement(148382..148852)PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; F8169_04220; phage(gi100060)2.28e-51Showinfo_outline
34complement(149150..149272)PHAGE_Bacill_Gamma_NC_007458: conserved phage protein; F8169_04225; phage(gi77020188)7.76e-06Showinfo_outline
35complement(150392..150766)hypothetical protein; F8169_042300.0Showinfo_outline
36complement(151858..152334)PHAGE_Bacill_WBeta_NC_007734: hypothetical protein; F8169_04235; phage(gi85701417)1.52e-74Showinfo_outline
37complement(152338..152847)PHAGE_Anoxyb_A403_NC_048701: holin; F8169_04240; phage(gi100034)2.78e-30Showinfo_outline
38complement(152874..153347)PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; F8169_04245; phage(gi100042)4.77e-16Showinfo_outline
39complement(153373..153537)PHAGE_Bacill_BceA1_NC_048628: DNA helicase; F8169_04250; phage(gi100044)3.26e-14Showinfo_outline
40complement(153557..153916)PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; F8169_04255; phage(gi100025)1.05e-40Showinfo_outline
41complement(153909..154187)PHAGE_Bacill_phBC6A51_NC_004820: Transcription state regulatory protein abrB; F8169_04260; phage(gi31415778)2.51e-24Showinfo_outline
42154275..154529hypothetical protein; F8169_042650.0Showinfo_outline
43complement(154532..154972)hypothetical protein; F8169_042700.0Showinfo_outline
44complement(154976..155971)PHAGE_Deep_s_D6E_NC_019544: replication protein; F8169_04275; phage(gi423262361)1.02e-62Showinfo_outline
45complement(156347..156613)PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; F8169_04280; phage(gi31415825)4.47e-43Showinfo_outline
46complement(156654..156878)PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; F8169_04285; phage(gi31415824)1.23e-33Showinfo_outline
47156918..156929attR0.0Showinfo_outline
48157065..157415PHAGE_Bacill_phBC6A52_NC_004821: Transcriptional regulator; F8169_04290; phage(gi31415823)8.21e-60Showinfo_outline
49complement(157861..159069)PHAGE_Bacill_phBC6A52_NC_004821: helix-turn-helix protein; F8169_04295; phage(gi31415822)0.0Showinfo_outline
50159678..160787PHAGE_Bacill_phBC6A52_NC_004821: DNA integration/recombination/invertion protein; F8169_04300; phage(gi31415821)0.0Showinfo_outline
51complement(160826..161527)PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; F8169_04305; phage(gi31415820)8.20e-166Showinfo_outline
52161580..161592attR0.0Showinfo_outline
53complement(161834..162319)PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; F8169_04310; phage(gi31415819)2.70e-104Showinfo_outline
54complement(162529..162663)PHAGE_Bacill_phBC6A52_NC_004821: DNA integration/recombination/invertion protein; F8169_04315; phage(gi31415840)7.04e-05Showinfo_outline
55complement(162813..163115)PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; F8169_04320; phage(gi31415818)7.39e-27Showinfo_outline
56complement(163563..163826)PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; F8169_04325; phage(gi31415817)5.61e-58Showinfo_outline
57177254..177266attR0.0Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

Viewer Options
Length: 370461 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download