Submission Results

Sequence Name: Not Available

GenBank Accession Number: WBPN01000018.1

GenInfo (GI) Number: 0000000000

Download Results: WBPN01000018.1.PHASTER.zip

gi|00000000|ref|WBPN01000018.1| Bacillus cereus strain CH460b_14D 41093, gc%: 35.15%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
141Kbintact150561-41093 info_outlinePHAGE_Bacill_WBeta_NC_007734(38)35.15%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|WBPN01000018.1| Bacillus cereus strain CH460b_14D 41093, gc%: 35.15%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 58 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(1..946)PHAGE_Bacill_WBeta_NC_007734: putative phage tail protein; F8170_12265; phage(gi85701393)2.48e-168Showinfo_outline
279..158attL0.0Showinfo_outline
3complement(961..4812)PHAGE_Bacill_WBeta_NC_007734: putative phage tail tape measure protein; F8170_12270; phage(gi85701392)0.0Showinfo_outline
4complement(4829..5023)PHAGE_Bacill_WBeta_NC_007734: hypothetical protein; F8170_12275; phage(gi85701391)7.18e-32Showinfo_outline
5complement(5035..5352)PHAGE_Bacill_WBeta_NC_007734: conserved phage protein; F8170_12280; phage(gi85701390)1.61e-48Showinfo_outline
6complement(5401..6009)PHAGE_Bacill_WBeta_NC_007734: putative major tail protein; F8170_12285; phage(gi85701389)1.20e-126Showinfo_outline
7complement(6010..6369)PHAGE_Bacill_WBeta_NC_007734: conserved structural protein; F8170_12290; phage(gi85701388)1.16e-80Showinfo_outline
8complement(6366..6806)PHAGE_Bacill_WBeta_NC_007734: conserved phage protein; F8170_12295; phage(gi85701387)1.63e-98Showinfo_outline
9complement(6799..7122)PHAGE_Bacill_WBeta_NC_007734: putative head-tail adaptor protein; F8170_12300; phage(gi85701386)3.15e-74Showinfo_outline
10complement(7119..7409)PHAGE_Bacill_WBeta_NC_007734: putative DNA packaging protein phage; F8170_12305; phage(gi85701385)1.25e-60Showinfo_outline
11complement(7427..8605)PHAGE_Bacill_WBeta_NC_007734: putative major capsid protein; F8170_12310; phage(gi85701384)0.0Showinfo_outline
12complement(8644..9264)PHAGE_Bacill_WBeta_NC_007734: putative Caudovirales phage prohead protease; F8170_12315; phage(gi85701383)3.59e-146Showinfo_outline
13complement(9227..10525)PHAGE_Bacill_WBeta_NC_007734: putative phage portal protein; F8170_12320; phage(gi85701382)0.0Showinfo_outline
14complement(10541..12238)PHAGE_Bacill_WBeta_NC_007734: putative phage terminase large subunit; F8170_12325; phage(gi85701381)0.0Showinfo_outline
15complement(12235..12720)PHAGE_Bacill_WBeta_NC_007734: putative phage terminase small subunit; F8170_12330; phage(gi85701380)1.15e-112Showinfo_outline
16complement(12821..13204)PHAGE_Bacill_WBeta_NC_007734: putative phage endonuclease; F8170_12335; phage(gi85701432)3.87e-88Showinfo_outline
17complement(13264..13539)PHAGE_Bacill_WBeta_NC_007734: conserved phage protein; F8170_12340; phage(gi85701431)2.01e-26Showinfo_outline
18complement(13571..13753)PHAGE_Bacill_BMBtpLA_NC_028748: hypothetical protein; F8170_12345; phage(gi971482475)2.55e-25Showinfo_outline
19complement(13952..14206)PHAGE_Bacill_WBeta_NC_007734: conserved phage protein; F8170_12350; phage(gi85701429)3.55e-53Showinfo_outline
20complement(14233..14424)PHAGE_Bacill_WBeta_NC_007734: hypothetical protein; F8170_12355; phage(gi85701428)1.53e-27Showinfo_outline
21complement(14411..14755)PHAGE_Bacill_WBeta_NC_007734: hypothetical protein; F8170_12360; phage(gi85701427)7.89e-31Showinfo_outline
22complement(14757..14999)hypothetical protein; F8170_123650.0Showinfo_outline
23complement(15004..15225)PHAGE_Bacill_WBeta_NC_007734: conserved phage protein; F8170_12370; phage(gi85701426)2.70e-45Showinfo_outline
24complement(15232..15456)PHAGE_Bacill_WBeta_NC_007734: hypothetical protein; F8170_12375; phage(gi85701425)9.12e-40Showinfo_outline
25complement(15576..15971)PHAGE_Bacill_WBeta_NC_007734: conserved phage protein; F8170_12380; phage(gi85701424)3.21e-86Showinfo_outline
26complement(16146..16268)PHAGE_Bacill_Gamma_NC_007458: conserved phage protein; F8170_12385; phage(gi77020188)6.19e-18Showinfo_outline
27complement(16415..16603)PHAGE_Bacill_WBeta_NC_007734: hypothetical protein; F8170_12390; phage(gi85701423)8.97e-32Showinfo_outline
28complement(16632..16898)hypothetical protein; F8170_123950.0Showinfo_outline
29complement(17140..17367)hypothetical protein; F8170_124000.0Showinfo_outline
30complement(18923..19234)PHAGE_Bacill_Shbh1_NC_030925: holin; F8170_12405; phage(gi100034)5.58e-22Showinfo_outline
31complement(19256..19564)PHAGE_Bacill_phIS3501_NC_019502: hypothetical protein; F8170_12410; phage(gi422934313)1.26e-64Showinfo_outline
3219986..20762RNA methyltransferase; F8170_124150.0Showinfo_outline
33complement(20912..21385)PHAGE_Bacill_WBeta_NC_007734: hypothetical protein; F8170_12420; phage(gi85701417)2.81e-87Showinfo_outline
34complement(21382..22128)PHAGE_Bacill_WBeta_NC_007734: putative RNA polymerase sigma subunit; F8170_12425; phage(gi85701416)1.06e-129Showinfo_outline
35complement(22121..22348)PHAGE_Bacill_WBeta_NC_007734: hypothetical protein; F8170_12430; phage(gi85701415)9.41e-14Showinfo_outline
36complement(22348..23229)PHAGE_Bacill_BM5_NC_029069: hypothetical protein; F8170_12435; phage(gi985757818)2.35e-33Showinfo_outline
37complement(23241..24014)PHAGE_Bacill_vB_BhaS_171_NC_030904: tail fiber protein; F8170_12440; phage(gi100052)3.54e-43Showinfo_outline
38complement(24176..24829)PHAGE_Bacill_WBeta_NC_007734: conserved phage protein; F8170_12445; phage(gi85701412)1.89e-82Showinfo_outline
39complement(24897..25643)PHAGE_Bacill_WBeta_NC_007734: putative antirepressor; F8170_12450; phage(gi85701411)1.05e-101Showinfo_outline
40complement(26086..26313)PHAGE_Bacill_WBeta_NC_007734: helix-turn-helix Cro and cI family protein; F8170_12455; phage(gi85701409)1.03e-45Showinfo_outline
4126473..26829PHAGE_Bacill_WBeta_NC_007734: helix-turn-helix Cro and cI family protein; F8170_12460; phage(gi85701408)7.93e-80Showinfo_outline
42complement(27169..28503)PHAGE_Bacill_WBeta_NC_007734: conserved phage protein; F8170_12465; phage(gi85701407)0.0Showinfo_outline
43complement(28606..30060)PHAGE_Bacill_WBeta_NC_007734: putative site-specific recombinase; F8170_12470; phage(gi85701406)0.0Showinfo_outline
44complement(30127..30990)PHAGE_Bacill_WBeta_NC_007734: conserved phage protein; F8170_12475; phage(gi85701405)0.0Showinfo_outline
45complement(31006..31125)PHAGE_Bacill_Gamma_NC_007458: hypothetical protein; F8170_12480; phage(gi77020140)1.23e-11Showinfo_outline
4631278..31478helix-turn-helix transcriptional regulator; F8170_124850.0Showinfo_outline
47complement(31523..32140)PHAGE_Bacill_WBeta_NC_007734: conserved phage protein; F8170_12490; phage(gi85701402)7.83e-148Showinfo_outline
48complement(32082..33263)PHAGE_Bacill_WBeta_NC_007734: FtsK/SpoIIIE family protein; F8170_12495; phage(gi85701401)0.0Showinfo_outline
49complement(33381..33563)PHAGE_Bacill_WBeta_NC_007734: conserved phage protein; F8170_12500; phage(gi85701400)1.16e-25Showinfo_outline
50complement(33566..33868)PHAGE_Bacill_WBeta_NC_007734: conserved phage protein; F8170_12505; phage(gi85701399)3.41e-62Showinfo_outline
5134028..34222PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; F8170_12510; phage(gi100025)6.67e-32Showinfo_outline
5234273..34602PHAGE_Bacill_BceA1_NC_048628: hypothetical protein; F8170_12515; phage(gi100024)4.76e-58Showinfo_outline
53complement(34641..35696)PHAGE_Bacill_phBC6A51_NC_004820: N-acetylmuramoyl-L-alanine amidase; F8170_12520; phage(gi31415803)0.0Showinfo_outline
54complement(35693..35932)PHAGE_Bacill_phBC6A51_NC_004820: holin; F8170_12525; phage(gi31415802)2.21e-38Showinfo_outline
55complement(35932..36168)PHAGE_Bacill_phBC6A51_NC_004820: XpaF1 protein; F8170_12530; phage(gi31415801)3.06e-43Showinfo_outline
56complement(36207..40403)PHAGE_Bacill_WBeta_NC_007734: putative minor structural protein; F8170_12535; phage(gi85701394)0.0Showinfo_outline
57complement(40400..41093)PHAGE_Bacill_phIS3501_NC_019502: phage tail component; F8170_12540; phage(gi422934339)8.99e-161Showinfo_outline
5841014..41093attR0.0Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 41093 bps
Phages: 1
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download