Submission Results

Sequence Name: Not Available

GenBank Accession Number: WBPO01000029.1

GenInfo (GI) Number: 0000000000

Download Results: WBPO01000029.1.PHASTER.zip

gi|00000000|ref|WBPO01000029.1| Bacillus cereus strain CH438c_13D 1352809, gc%: 34.32%

Download summary as .txt file: summary.txt file_download

Total: 4 prophage regions have been identified, of which 0 regions are intact, 3 regions are incomplete, and 1 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
122.7Kbquestionable804038-22794 info_outlinePHAGE_Lister_2389_NC_003291(9)33.72%Show info_outline
219.9Kbincomplete102065952-85920 info_outlinePHAGE_Bacill_phBC6A52_NC_004821(7)30.37%Show info_outline
39.9Kbincomplete4011365588-375532 info_outlinePHAGE_Bacill_G_NC_023719(2)34.52%Show info_outline
425.4Kbincomplete3019388783-414234 info_outlinePHAGE_Bacill_phBC6A52_NC_004821(3)34.52%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|WBPO01000029.1| Bacillus cereus strain CH438c_13D 1352809, gc%: 34.32%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 42 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(38..394)PHAGE_Lister_2389_NC_003291: Gp7 protein; F8171_13580; phage(gi17488510)5.82e-14Showinfo_outline
2complement(375..671)PHAGE_Lister_2389_NC_003291: Gp6 protein; F8171_13585; phage(gi17488509)1.37e-15Showinfo_outline
3complement(664..810)hypothetical protein; F8171_135900.0Showinfo_outline
4complement(812..1975)PHAGE_Lister_2389_NC_003291: major capsid protein a; F8171_13595; phage(gi17488508)7.91e-102Showinfo_outline
51999..2011attL0.0Showinfo_outline
6complement(2018..2734)PHAGE_Lister_2389_NC_003291: Clp protease; F8171_13600; phage(gi17488507)7.46e-44Showinfo_outline
7complement(2715..3887)PHAGE_Lister_2389_NC_003291: hypothetical protein; F8171_13605; phage(gi17488506)1.96e-94Showinfo_outline
8complement(3902..5521)PHAGE_Lister_2389_NC_003291: terminase large subunit; F8171_13610; phage(gi17488505)1.28e-147Showinfo_outline
9complement(5565..5885)PHAGE_Lister_2389_NC_003291: terminase small subunit; F8171_13615; phage(gi17488504)5.24e-10Showinfo_outline
10complement(5990..6298)hypothetical protein; F8171_136200.0Showinfo_outline
11complement(6295..6843)PHAGE_Lactob_phiAQ113_NC_019782: HNH endonuclease; F8171_13625; phage(gi446730230)5.35e-47Showinfo_outline
12complement(6843..7037)PHAGE_Lister_2389_NC_003291: Gp54 protein; F8171_13630; phage(gi17488559)8.51e-14Showinfo_outline
13complement(7151..7402)hypothetical protein; F8171_136350.0Showinfo_outline
14complement(7407..7631)PHAGE_Bacill_phi4B1_NC_028886: hypothetical protein; F8171_13640; phage(gi971821297)4.77e-05Showinfo_outline
15complement(7618..7980)hypothetical protein; F8171_136450.0Showinfo_outline
16complement(8045..8290)hypothetical protein; F8171_136500.0Showinfo_outline
17complement(8890..9432)PHAGE_Bacill_BtCS33_NC_018085: integrase; F8171_13655; phage(gi392972759)1.42e-68Showinfo_outline
18complement(9429..9720)PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; F8171_13660; phage(gi100060)8.88e-09Showinfo_outline
19complement(9916..10168)ArpU family transcriptional regulator; F8171_136650.0Showinfo_outline
20complement(10344..10466)PHAGE_Bacill_Gamma_NC_007458: conserved phage protein; F8171_13670; phage(gi77020188)2.25e-05Showinfo_outline
21complement(10618..10854)hypothetical protein; F8171_136750.0Showinfo_outline
22complement(10975..11388)PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; F8171_13680; phage(gi712912366)6.11e-51Showinfo_outline
23complement(11425..11619)PHAGE_Strept_858_NC_010353: orf42; F8171_13685; phage(gi168229315)1.05e-08Showinfo_outline
24complement(11657..11857)PHAGE_Bacill_BigBertha_NC_022769: hypothetical protein; F8171_13690; phage(gi568191277)1.14e-10Showinfo_outline
25complement(11894..12262)PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; F8171_13695; phage(gi31415765)2.49e-18Showinfo_outline
26complement(12301..12837)PHAGE_Bacill_BMBtpLA_NC_028748: hypothetical protein; F8171_13700; phage(gi971482529)1.91e-24Showinfo_outline
27complement(13085..13300)hypothetical protein; F8171_137050.0Showinfo_outline
28complement(13321..13572)PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; F8171_13710; phage(gi100042)1.01e-22Showinfo_outline
29complement(13598..13765)PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; F8171_13715; phage(gi31415831)1.83e-19Showinfo_outline
30complement(13784..14143)PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; F8171_13720; phage(gi100025)2.10e-41Showinfo_outline
31complement(14136..14414)PHAGE_Bacill_phBC6A51_NC_004820: Transcription state regulatory protein abrB; F8171_13725; phage(gi31415778)2.57e-22Showinfo_outline
32complement(14431..14625)PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; F8171_13730; phage(gi100012)4.41e-32Showinfo_outline
33complement(14641..15516)PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; F8171_13735; phage(gi31415829)0.0Showinfo_outline
34complement(15455..16246)PHAGE_Bacill_phBC6A52_NC_004821: replication protein; F8171_13740; phage(gi31415828)1.02e-114Showinfo_outline
35complement(16621..16971)PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; F8171_13745; phage(gi100039)2.73e-06Showinfo_outline
36complement(16968..17198)PHAGE_Bacill_IEBH_NC_011167: helix-turn-helix domain protein; F8171_13750; phage(gi197261594)3.39e-20Showinfo_outline
3717433..17786PHAGE_Bacill_250_NC_029024: helix-turn-helix domain protein; F8171_13755; phage(gi971766654)6.52e-36Showinfo_outline
38complement(18302..19441)PHAGE_Bacill_phIS3501_NC_019502: helix-turn-helix protein; F8171_13760; phage(gi422934301)9.71e-141Showinfo_outline
3919978..20331PHAGE_Bacill_phBC6A51_NC_004820: Transcriptional regulator, MerR family; F8171_13765; phage(gi31415741)2.57e-30Showinfo_outline
4020519..21373hypothetical protein; F8171_137700.0Showinfo_outline
4121520..21532attR0.0Showinfo_outline
4221670..22794PROPHAGE_Mesorh_MAFF303099: bacteriophage integrase; F8171_13775; phage(gi13470699)2.29e-64Showinfo_outline

Region 2, total 24 CDS

#CDS PositionBLAST HitE-ValueSequence
165952..65963attL0.0Showinfo_outline
269519..69530attL0.0Showinfo_outline
3complement(71769..71891)PHAGE_Bacill_Gamma_NC_007458: conserved phage protein; F8171_14000; phage(gi77020188)3.45e-06Showinfo_outline
4complement(73011..73385)hypothetical protein; F8171_140050.0Showinfo_outline
5complement(74476..74952)PHAGE_Bacill_WBeta_NC_007734: hypothetical protein; F8171_14010; phage(gi85701417)1.52e-74Showinfo_outline
6complement(74956..75465)PHAGE_Anoxyb_A403_NC_048701: holin; F8171_14015; phage(gi100034)2.78e-30Showinfo_outline
7complement(75492..75965)PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; F8171_14020; phage(gi100042)3.01e-16Showinfo_outline
8complement(75991..76155)PHAGE_Bacill_BceA1_NC_048628: DNA helicase; F8171_14025; phage(gi100044)3.26e-14Showinfo_outline
9complement(76175..76534)PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; F8171_14030; phage(gi100025)2.39e-40Showinfo_outline
10complement(76527..76805)PHAGE_Bacill_phBC6A51_NC_004820: Transcription state regulatory protein abrB; F8171_14035; phage(gi31415778)1.30e-22Showinfo_outline
11complement(76819..77304)IDEAL domain-containing protein; F8171_140400.0Showinfo_outline
12complement(77308..78342)PHAGE_Bacill_phIS3501_NC_019502: phage replication protein DnaD; F8171_14045; phage(gi422934307)6.89e-55Showinfo_outline
13complement(78776..79051)PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; F8171_14050; phage(gi31415825)1.13e-42Showinfo_outline
14complement(79208..79393)PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; F8171_14055; phage(gi100006)3.56e-37Showinfo_outline
1579594..79956PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; F8171_14060; phage(gi100005)4.05e-79Showinfo_outline
16complement(80364..81557)PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; F8171_14065; phage(gi100003)0.0Showinfo_outline
1781856..82965PHAGE_Bacill_phBC6A52_NC_004821: DNA integration/recombination/invertion protein; F8171_14070; phage(gi31415821)0.0Showinfo_outline
18complement(83004..83705)PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; F8171_14075; phage(gi31415820)3.08e-167Showinfo_outline
19complement(84012..84497)PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; F8171_14080; phage(gi31415819)8.59e-104Showinfo_outline
2084559..84570attR0.0Showinfo_outline
21complement(84707..84841)PHAGE_Bacill_phBC6A52_NC_004821: DNA integration/recombination/invertion protein; F8171_14085; phage(gi31415840)7.04e-05Showinfo_outline
22complement(84991..85209)PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; F8171_14090; phage(gi31415818)4.12e-23Showinfo_outline
2385377..85388attR0.0Showinfo_outline
24complement(85657..85920)PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; F8171_14095; phage(gi31415817)5.61e-58Showinfo_outline

Region 3, total 11 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(365588..365878)PHAGE_Lactob_phiAT3_NC_005893: putative transposase A; F8171_15440; phage(gi48697273)4.92e-05Showinfo_outline
2complement(365972..366187)hypothetical protein; F8171_154450.0Showinfo_outline
3complement(366184..367320)PHAGE_Bacill_phi105_NC_004167: hypothetical protein; F8171_15450; phage(gi22855023)4.82e-17Showinfo_outline
4367634..368287hypothetical protein; F8171_154550.0Showinfo_outline
5complement(368637..369695)PHAGE_Bacill_phBC6A51_NC_004820: N-acetylmuramoyl-L-alanine amidase; F8171_15460; phage(gi31415803)0.0Showinfo_outline
6complement(369773..370270)PHAGE_Bacill_phi4B1_NC_028886: holin family protein; F8171_15465; phage(gi971821288)8.39e-35Showinfo_outline
7370566..371759PHAGE_Bacill_vB_BceS_MY192_NC_048633: minor tail protein; F8171_15470; phage(gi100055)2.96e-28Showinfo_outline
8complement(371923..372171)hypothetical protein; F8171_154750.0Showinfo_outline
9complement(372185..373135)PHAGE_Bacill_G_NC_023719: gp371; F8171_15480; phage(gi593777827)4.33e-08Showinfo_outline
10complement(373151..373531)PHAGE_Bacill_G_NC_023719: gp369; F8171_15485; phage(gi593777825)5.13e-13Showinfo_outline
11complement(373544..375532)PHAGE_Bacill_0305phi8_36_NC_009760: virion structural protein; F8171_15490; phage(gi156564113)1.04e-21Showinfo_outline

Region 4, total 21 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(388783..389385)PHAGE_Entero_phiFL4A_NC_013644: hypothetical protein; F8171_15555; phage(gi281416479)4.26e-17Showinfo_outline
2complement(389398..389820)hypothetical protein; F8171_155600.0Showinfo_outline
3complement(389824..390234)PHAGE_Marino_P12026_NC_018269: hypothetical protein; F8171_15565; phage(gi399528326)3.42e-10Showinfo_outline
4complement(390241..390609)hypothetical protein; F8171_155700.0Showinfo_outline
5complement(390606..391142)hypothetical protein; F8171_155750.0Showinfo_outline
6complement(391142..391306)hypothetical protein; F8171_155800.0Showinfo_outline
7complement(391476..392462)PHAGE_Strept_Jay2Jay_NC_029098: major capsid protein; F8171_15585; phage(gi985760260)7.47e-29Showinfo_outline
8complement(392480..393682)PHAGE_Lactoc_98201_NC_031064: holin; F8171_15590; phage(gi100034)2.67e-44Showinfo_outline
9complement(393797..394315)PHAGE_Clostr_phi8074_B1_NC_019924: putative phage head protein; F8171_15595; phage(gi431810362)4.52e-12Showinfo_outline
10complement(394429..395904)PHAGE_Strept_Samisti12_NC_042012: primase; F8171_15600; phage(gi100047)7.41e-48Showinfo_outline
11complement(395974..397380)PHAGE_Clostr_CDKM15_NC_048643: hypothetical protein; F8171_15605; phage(gi100002)0.0Showinfo_outline
12complement(397373..398221)PHAGE_Aeriba_AP45_NC_048651: hypothetical protein; F8171_15610; phage(gi100038)4.58e-54Showinfo_outline
13complement(398243..398422)hypothetical protein; F8171_156150.0Showinfo_outline
14complement(398494..399036)PHAGE_Bacill_phBC6A52_NC_004821: DNA integration/recombination/invertion protein; F8171_15620; phage(gi31415840)6.68e-58Showinfo_outline
15399106..399117attL0.0Showinfo_outline
16399512..399718hypothetical protein; F8171_156250.0Showinfo_outline
17complement(400149..400366)PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; F8171_15630; phage(gi31415842)4.31e-30Showinfo_outline
18complement(400724..401401)DUF421 domain-containing protein; F8171_156350.0Showinfo_outline
19complement(401780..402322)PHAGE_Bacill_phBC6A52_NC_004821: DNA integration/recombination/invertion protein; F8171_15640; phage(gi31415840)3.44e-126Showinfo_outline
20complement(402322..402804)PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; F8171_15645; phage(gi31415839)2.59e-94Showinfo_outline
21414234..414245attR0.0Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

Viewer Options
Length: 1352809 bps
Phages: 4
arrow_upwardarrow_upwardarrow_upward
Click on a region in the genome above to show details here.
Viewer Options
Click on a sequence to see details.
Viewer Options
Click on a sequence to see details.
Viewer Options
Click on a sequence to see details.
Viewer Options
Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download