Submission Results

Sequence Name: Not Available

GenBank Accession Number: WBPP01000001.1

GenInfo (GI) Number: 0000000000

Download Results: WBPP01000001.1.PHASTER.zip

gi|00000000|ref|WBPP01000001.1| Bacillus cereus strain CH417_13T 50344, gc%: 36.43%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
150.3Kbintact150601-50344 info_outlinePHAGE_Bacill_vB_BtS_B83_NC_048762(46)36.43%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|WBPP01000001.1| Bacillus cereus strain CH417_13T 50344, gc%: 36.43%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 62 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(1..428)PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: tail length tape-measure protein; F8172_00005; phage(gi100057)1.19e-83Showinfo_outline
2complement(416..1966)PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: minor tail protein; F8172_00010; phage(gi100056)0.0Showinfo_outline
3complement(1963..3450)PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: minor tail protein; F8172_00015; phage(gi100055)0.0Showinfo_outline
4complement(3502..3843)PemK family transcriptional regulator; F8172_000200.0Showinfo_outline
5complement(3849..4049)hypothetical protein; F8172_000250.0Showinfo_outline
64301..5137PHAGE_Bacill_vB_BtS_B83_NC_048762: hypothetical protein; F8172_00030; phage(gi100002)0.0Showinfo_outline
7complement(5142..6083)PHAGE_Bacill_vB_BtS_B83_NC_048762: methyltransferase type 11; F8172_00035; phage(gi100001)0.0Showinfo_outline
8complement(6143..6376)PHAGE_Bacill_vB_BtS_B83_NC_048762: terminase small subunit; F8172_00040; phage(gi100071)2.50e-45Showinfo_outline
9complement(6390..6530)PHAGE_Bacill_vB_BtS_B83_NC_048762: terminase large subunit; F8172_00045; phage(gi100070)9.16e-25Showinfo_outline
10complement(6663..6896)PHAGE_Bacill_vB_BtS_B83_NC_048762: portal protein; F8172_00050; phage(gi100069)4.39e-45Showinfo_outline
11complement(7033..8253)PHAGE_Bacill_vB_BtS_B83_NC_048762: head morphogenesis protein; F8172_00055; phage(gi100068)0.0Showinfo_outline
12complement(8273..8506)PHAGE_Bacill_vB_BtS_B83_NC_048762: capsid maturation protease; F8172_00060; phage(gi100067)1.42e-49Showinfo_outline
138586..8597attL0.0Showinfo_outline
14complement(9427..9933)PHAGE_Bacill_vB_BtS_B83_NC_048762: capsid decoration protein; F8172_00065; phage(gi100066)8.91e-117Showinfo_outline
15complement(10145..10426)PHAGE_Bacill_vB_BtS_B83_NC_048762: hypothetical protein; F8172_00070; phage(gi100064)2.72e-62Showinfo_outline
16complement(10452..10577)PHAGE_Bacill_vB_BtS_B83_NC_048762: hypothetical protein; F8172_00075; phage(gi100063)1.84e-08Showinfo_outline
17complement(11061..11663)hypothetical protein; F8172_000800.0Showinfo_outline
18complement(11700..12008)hypothetical protein; F8172_000850.0Showinfo_outline
19complement(12351..12875)PHAGE_Bacill_vB_BtS_B83_NC_048762: recombination protein; F8172_00090; phage(gi100049)5.68e-51Showinfo_outline
20complement(12931..13011)PHAGE_Geobac_GBK2_NC_023612: dUTPase; F8172_00095; phage(gi589893816)2.92e-05Showinfo_outline
21complement(13212..13676)PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; F8172_00100; phage(gi100028)1.11e-73Showinfo_outline
22complement(13677..13817)PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; F8172_00105; phage(gi100027)4.35e-07Showinfo_outline
23complement(13817..14629)PHAGE_Bacill_vB_BtS_B83_NC_048762: exonuclease; F8172_00110; phage(gi100048)6.98e-164Showinfo_outline
24complement(14647..15021)PHAGE_Bacill_vB_BtS_B83_NC_048762: primase; F8172_00115; phage(gi100047)1.70e-81Showinfo_outline
25complement(15049..15465)PHAGE_Bacill_vB_BtS_B83_NC_048762: HNH endonuclease; F8172_00120; phage(gi100046)2.16e-90Showinfo_outline
26complement(15526..16035)PHAGE_Bacill_vB_BtS_B83_NC_048762: putative transcriptional regulator; F8172_00125; phage(gi100045)1.91e-93Showinfo_outline
27complement(16047..16574)PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; F8172_00130; phage(gi100022)5.29e-115Showinfo_outline
28complement(16936..17136)PHAGE_Bacill_vB_BtS_B83_NC_048762: hypothetical protein; F8172_00135; phage(gi100042)5.19e-41Showinfo_outline
2917317..17751PHAGE_Bacill_vB_BtS_B83_NC_048762: DNA adenine methyltransferase; F8172_00140; phage(gi100041)3.83e-104Showinfo_outline
30complement(18301..19503)PHAGE_Bacill_vB_BtS_B83_NC_048762: hypothetical protein; F8172_00145; phage(gi100038)0.0Showinfo_outline
3119632..19871PHAGE_Bacill_vB_BtS_B83_NC_048762: putative phosphoesterase; F8172_00150; phage(gi100037)1.87e-50Showinfo_outline
3220801..22039PHAGE_Bacill_vB_BtS_B83_NC_048762: hypothetical protein; F8172_00155; phage(gi100036)0.0Showinfo_outline
3322166..22462PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; F8172_00160; phage(gi100012)7.20e-59Showinfo_outline
3422700..23254PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; F8172_00165; phage(gi100011)4.50e-102Showinfo_outline
3523344..24312PHAGE_Bacill_vB_BtS_B83_NC_048762: endolysin; F8172_00170; phage(gi100033)0.0Showinfo_outline
3624454..25569PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; F8172_00175; phage(gi100009)0.0Showinfo_outline
3725579..25941PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; F8172_00180; phage(gi100008)1.18e-70Showinfo_outline
3826034..26273PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; F8172_00185; phage(gi100007)9.47e-44Showinfo_outline
3926289..26828PHAGE_Bacill_vB_BtS_B83_NC_048762: hypothetical protein; F8172_00190; phage(gi100029)2.29e-114Showinfo_outline
4027054..27281YolD-like family protein; F8172_001950.0Showinfo_outline
4127331..27705PHAGE_Bacill_vB_BtS_B83_NC_048762: hypothetical protein; F8172_00200; phage(gi100027)5.51e-80Showinfo_outline
42complement(27721..27990)PHAGE_Bacill_Deep_Purple_NC_048667: hypothetical protein; F8172_00205; phage(gi100017)7.47e-08Showinfo_outline
43complement(28654..29484)PHAGE_Bacill_vB_BtS_B83_NC_048762: hypothetical protein; F8172_00210; phage(gi100026)0.0Showinfo_outline
44complement(29562..29771)PHAGE_Bacill_vB_BtS_B83_NC_048762: hypothetical protein; F8172_00215; phage(gi100025)3.26e-41Showinfo_outline
45complement(29752..30267)PHAGE_Bacill_vB_BtS_B83_NC_048762: hypothetical protein; F8172_00220; phage(gi100024)2.17e-119Showinfo_outline
46complement(30304..30687)PHAGE_Bacill_vB_BtS_B83_NC_048762: hypothetical protein; F8172_00225; phage(gi100023)4.04e-54Showinfo_outline
47complement(30703..36246)PHAGE_Bacill_vB_BtS_B83_NC_048762: hypothetical protein; F8172_00230; phage(gi100022)0.0Showinfo_outline
48complement(36243..37751)PHAGE_Bacill_vB_BtS_B83_NC_048762: hypothetical protein; F8172_00235; phage(gi100021)0.0Showinfo_outline
4942596..42709cytochrome c5 family protein; F8172_002400.0Showinfo_outline
5043024..43035attR0.0Showinfo_outline
51complement(43598..44005)PHAGE_Bacill_vB_BtS_B83_NC_048762: hypothetical protein; F8172_00245; phage(gi100019)6.81e-21Showinfo_outline
52complement(43933..44412)PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: capsid maturation protease; F8172_00250; phage(gi100067)4.98e-53Showinfo_outline
53complement(44443..45255)PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: capsid decoration protein; F8172_00255; phage(gi100066)2.44e-163Showinfo_outline
54complement(45255..45506)PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; F8172_00260; phage(gi100065)1.23e-30Showinfo_outline
55complement(45519..45875)PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; F8172_00265; phage(gi100064)3.65e-75Showinfo_outline
56complement(45889..46302)PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; F8172_00270; phage(gi100063)1.21e-79Showinfo_outline
57complement(46302..46679)PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; F8172_00275; phage(gi100062)3.65e-70Showinfo_outline
58complement(46682..47062)PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; F8172_00280; phage(gi100061)1.90e-84Showinfo_outline
59complement(47064..47387)PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; F8172_00285; phage(gi100060)7.79e-58Showinfo_outline
60complement(47399..48325)PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; F8172_00290; phage(gi100059)0.0Showinfo_outline
61complement(48354..49565)PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; F8172_00295; phage(gi100058)0.0Showinfo_outline
62complement(49687..50344)PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: tail length tape-measure protein; F8172_00300; phage(gi100057)2.25e-150Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

Viewer Options
Length: 50344 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download