Submission Results

Sequence Name: Not Available

GenBank Accession Number: WDHB01000007.1

GenInfo (GI) Number: 0000000000

Download Results: WDHB01000007.1.PHASTER.zip

gi|00000000|ref|WDHB01000007.1| Bifidobacterium adolescentis strain BIOML-A63 48894, gc%: 44.64%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
148.8Kbintact150711-48894 info_outlinePHAGE_Vibrio_X29_NC_024369(22)44.64%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|WDHB01000007.1| Bifidobacterium adolescentis strain BIOML-A63 48894, gc%: 44.64%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 72 CDS

#CDS PositionBLAST HitE-ValueSequence
11..486PROPHAGE_Escher_Sakai: putative transposase; GA602_08600; phage(gi38704244)1.60e-104Showinfo_outline
2complement(535..1224)PHAGE_Entero_VT2_Sakai_NC_000902: similar to antirepressor of bacteriophage P22; GA602_08605; phage(gi9633431)7.55e-53Showinfo_outline
3complement(1221..1412)hypothetical protein; GA602_086100.0Showinfo_outline
4complement(2538..2786)hypothetical protein; GA602_086150.0Showinfo_outline
5complement(2830..3483)PHAGE_Rhizob_RHEph10_NC_034248: hypothetical protein; GA602_08620; phage(gi100154)5.10e-34Showinfo_outline
6complement(3634..4008)hypothetical protein; GA602_086250.0Showinfo_outline
7complement(4101..4763)PHAGE_Clostr_phiCD211_NC_029048: putative HTH-type transcriptional regulator ImmR; GA602_08630; phage(gi981221022)1.03e-06Showinfo_outline
84938..5432hypothetical protein; GA602_086350.0Showinfo_outline
95429..5944hypothetical protein; GA602_086400.0Showinfo_outline
105941..6174PHAGE_Burkho_DC1_NC_018452: hypothetical protein; GA602_08645; phage(gi401723028)1.46e-06Showinfo_outline
116174..6578PHAGE_Vibrio_12A4_NC_021068: hypothetical protein; GA602_08650; phage(gi481019103)3.77e-29Showinfo_outline
126575..6907PHAGE_Lister_A500_NC_009810: gp58; GA602_08655; phage(gi157325017)6.94e-21Showinfo_outline
136911..7288hypothetical protein; GA602_086600.0Showinfo_outline
147458..8525PHAGE_Faecal_FP_Toutatis_NC_047915: hypothetical protein; GA602_08665; phage(gi100040)7.25e-15Showinfo_outline
158603..8884PHAGE_Aeromo_pIS4_A_NC_042037: hypothetical protein; GA602_08670; phage(gi100036)4.50e-07Showinfo_outline
168881..9246PHAGE_Escher_Lys12581Vzw_NC_049917: tail tip protein; GA602_08675; phage(gi100054)5.55e-15Showinfo_outline
179252..9872PHAGE_Escher_RCS47_NC_042128: hypothetical protein; GA602_08680; phage(gi100105)3.95e-52Showinfo_outline
189865..10122PHAGE_Entero_EcP1_NC_019485: hypothetical protein; GA602_08685; phage(gi418489320)1.69e-21Showinfo_outline
1910109..10297PHAGE_Stx2_c_Stx2a_F451_NC_049924: hypothetical protein; GA602_08690; phage(gi100014)2.22e-39Showinfo_outline
2010299..10508PHAGE_Escher_phiV10_NC_007804: hypothetical protein; GA602_08695; phage(gi89152466)4.80e-43Showinfo_outline
2110664..11017PHAGE_Escher_Av_05_NC_025830: hypothetical protein; GA602_08700; phage(gi730985110)3.87e-48Showinfo_outline
2211019..11432PHAGE_Escher_P13374_NC_018846: hypothetical protein; GA602_08705; phage(gi410491607)4.94e-26Showinfo_outline
2311818..12213PHAGE_Entero_mEp390_NC_019721: putative holin; GA602_08710; phage(gi428782712)9.31e-70Showinfo_outline
2412200..12496PHAGE_Entero_mEp390_NC_019721: putative holin; GA602_08715; phage(gi428782713)3.16e-38Showinfo_outline
2512480..13025PHAGE_Erwini_vB_EamP_S6_NC_019514: endolysin; GA602_08720; phage(gi422935930)7.84e-90Showinfo_outline
2613022..13300PHAGE_Entero_mEp390_NC_019721: hypothetical protein; GA602_08725; phage(gi428782715)3.20e-31Showinfo_outline
2713594..13669tRNA0.0Showinfo_outline
2813975..14563S-adenosylmethionine-binding protein; GA602_087350.0Showinfo_outline
2914676..14945PHAGE_Erwini_PEp14_NC_016767: hypothetical protein; GA602_08740; phage(gi374531911)1.66e-08Showinfo_outline
3014945..15142hypothetical protein; GA602_087450.0Showinfo_outline
3115217..15516hypothetical protein; GA602_087500.0Showinfo_outline
3215494..15706hypothetical protein; GA602_087550.0Showinfo_outline
3315905..16315PHAGE_Entero_phiP27_NC_003356: hypothetical protein; GA602_08760; phage(gi18249897)6.00e-53Showinfo_outline
3416550..17173PHAGE_Vibrio_X29_NC_024369: DNA modification methylase; GA602_08765; phage(gi658311236)5.28e-40Showinfo_outline
3517173..18546methyltransferase domain-containing protein; GA602_087700.0Showinfo_outline
3618587..19282PHAGE_Rhodob_RcRhea_NC_028954: minor tail protein; GA602_08775; phage(gi971760207)2.82e-10Showinfo_outline
3719840..20430PHAGE_Vibrio_X29_NC_024369: DNA modification methylase; GA602_08780; phage(gi658311236)6.10e-53Showinfo_outline
3820430..20981PHAGE_Vibrio_X29_NC_024369: hypothetical protein; GA602_08785; phage(gi658311235)1.12e-34Showinfo_outline
3920987..22843PHAGE_Vibrio_X29_NC_024369: terminase large subunit; GA602_08790; phage(gi697424992)0.0Showinfo_outline
4022855..23094PHAGE_Vibrio_X29_NC_024369: hypothetical protein; GA602_08795; phage(gi658311230)2.49e-20Showinfo_outline
4123091..24665PHAGE_Vibrio_X29_NC_024369: portal protein; GA602_08800; phage(gi658311229)0.0Showinfo_outline
4224655..25722PHAGE_Vibrio_X29_NC_024369: protease-like protein; GA602_08805; phage(gi658311228)1.24e-90Showinfo_outline
4325732..26115PHAGE_Vibrio_X29_NC_024369: hypothetical protein; GA602_08810; phage(gi658311227)2.55e-06Showinfo_outline
4426136..27179PHAGE_Vibrio_X29_NC_024369: major capsid E family protein; GA602_08815; phage(gi658311226)9.17e-88Showinfo_outline
4527180..27572hypothetical protein; GA602_088200.0Showinfo_outline
4627572..27916PHAGE_Vibrio_X29_NC_024369: hypothetical protein; GA602_08825; phage(gi658311224)2.94e-29Showinfo_outline
4727913..28398PHAGE_Vibrio_X29_NC_024369: hypothetical protein; GA602_08830; phage(gi658311222)1.25e-20Showinfo_outline
4828399..28689PHAGE_Vibrio_X29_NC_024369: hypothetical protein; GA602_08835; phage(gi658311221)7.85e-08Showinfo_outline
4928689..30152PHAGE_Vibrio_X29_NC_024369: tail sheath protein; GA602_08840; phage(gi658311220)0.0Showinfo_outline
5030169..30690PHAGE_Vibrio_X29_NC_024369: tail tube FII family protein; GA602_08845; phage(gi658311219)3.13e-67Showinfo_outline
5130700..30981PHAGE_Vibrio_X29_NC_024369: hypothetical protein; GA602_08850; phage(gi658311217)1.76e-17Showinfo_outline
5231796..33928PHAGE_Vibrio_X29_NC_024369: tail length tape-measure protein; GA602_08855; phage(gi697424994)1.33e-23Showinfo_outline
5333921..34139PHAGE_Vibrio_X29_NC_024369: hypothetical protein; GA602_08860; phage(gi658311214)1.11e-15Showinfo_outline
5434129..35130PHAGE_Vibrio_X29_NC_024369: late control D family protein; GA602_08865; phage(gi658311213)1.49e-86Showinfo_outline
5535133..35753PHAGE_Vibrio_X29_NC_024369: putative baseplate protein; GA602_08870; phage(gi658311212)1.24e-41Showinfo_outline
5635750..36217PHAGE_Vibrio_X29_NC_024369: hypothetical protein; GA602_08875; phage(gi658311211)2.26e-19Showinfo_outline
5736214..36534PHAGE_Vibrio_X29_NC_024369: lysozyme; GA602_08880; phage(gi658311210)6.60e-16Showinfo_outline
5836531..37655PHAGE_Vibrio_X29_NC_024369: baseplate J-like protein; GA602_08885; phage(gi658311209)3.35e-104Showinfo_outline
5937648..38229PHAGE_Burkho_ST79_NC_021343: phage tail protein I; GA602_08890; phage(gi509141642)3.06e-30Showinfo_outline
6038281..40770PHAGE_Entero_JenP1_NC_029028: tail fiber protein; GA602_08895; phage(gi971767090)0.0Showinfo_outline
6140770..41048PHAGE_Entero_JenP2_NC_028997: hypothetical protein; GA602_08900; phage(gi971763992)7.11e-37Showinfo_outline
6241511..41990PHAGE_Escher_pro147_NC_028896: tail fibers protein; GA602_08905; phage(gi971753729)2.15e-50Showinfo_outline
6341992..42519PHAGE_Entero_P88_NC_026014: tail fiber assembly protein; GA602_08910; phage(gi744692740)4.70e-118Showinfo_outline
6442871..43707RepA; GA602_089150.0Showinfo_outline
6544351..44638hypothetical protein; GA602_089200.0Showinfo_outline
6644662..44925PHAGE_Salmon_SPN3UB_NC_019545: hypothetical protein; GA602_08925; phage(gi423262434)1.30e-18Showinfo_outline
6745170..45517type II toxin-antitoxin system RelE/ParE family toxin; GA602_089300.0Showinfo_outline
6845517..45816PHAGE_Shigel_Stx_NC_029120: helix-turn-helix family protein; GA602_08935; phage(gi985761268)7.15e-05Showinfo_outline
6945980..46360hypothetical protein; GA602_089400.0Showinfo_outline
7046424..46696PHAGE_Erwini_PEp14_NC_016767: hypothetical protein; GA602_08945; phage(gi374531851)2.31e-12Showinfo_outline
71complement(47428..47868)PROPHAGE_Escher_Sakai: putative transposase; GA602_08950; phage(gi15834436)1.97e-41Showinfo_outline
7247888..48894PROPHAGE_Escher_Sakai: putative transposase; GA602_08955; phage(gi38704244)4.62e-137Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 48894 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download