Submission Results

Sequence Name: Not Available

GenBank Accession Number: WIBH01000012.1

GenInfo (GI) Number: 0000000000

Download Results: WIBH01000012.1.PHASTER.zip

gi|00000000|ref|WIBH01000012.1| Flavobacterium sp. LMO6 NODE_12_length_95344_cov_81.199_ID_11796, 95344, gc%: 30.56%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
143.2Kbintact1315011264-54500 info_outlinePHAGE_Flavob_vB_FspS_laban6_1_NC_048834(50)31.14%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|WIBH01000012.1| Flavobacterium sp. LMO6 NODE_12_length_95344_cov_81.199_ID_11796, 95344, gc%: 30.56%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 52 CDS

#CDS PositionBLAST HitE-ValueSequence
111264..11284attL0.0Showinfo_outline
211388..12590PHAGE_Flavob_vB_FspS_laban6_1_NC_048834: methyltransferase type 11; GFJ99_11565; phage(gi100001)0.0Showinfo_outline
3complement(12601..14493)PHAGE_Flavob_vB_FspS_laban6_1_NC_048834: hypothetical protein; GFJ99_11570; phage(gi100002)0.0Showinfo_outline
4complement(14471..16666)PHAGE_Flavob_vB_FspS_laban6_1_NC_048834: hypothetical protein; GFJ99_11575; phage(gi100003)0.0Showinfo_outline
5complement(16668..17072)PHAGE_Flavob_vB_FspS_laban6_1_NC_048834: hypothetical protein; GFJ99_11580; phage(gi100004)6.69e-93Showinfo_outline
6complement(17074..21330)PHAGE_Flavob_vB_FspS_laban6_1_NC_048834: hypothetical protein; GFJ99_11585; phage(gi100005)0.0Showinfo_outline
721479..22681PHAGE_Flavob_vB_FspS_laban6_1_NC_048834: hypothetical protein; GFJ99_11590; phage(gi100007)0.0Showinfo_outline
822678..23841PHAGE_Flavob_vB_FspS_laban6_1_NC_048834: hypothetical protein; GFJ99_11595; phage(gi100008)0.0Showinfo_outline
9complement(23925..24311)PHAGE_Flavob_vB_FspS_laban6_1_NC_048834: hypothetical protein; GFJ99_11600; phage(gi100009)2.74e-89Showinfo_outline
10complement(24646..25149)PHAGE_Flavob_vB_FspS_laban6_1_NC_048834: hypothetical protein; GFJ99_11605; phage(gi100012)1.05e-114Showinfo_outline
11complement(25194..25373)PHAGE_Flavob_vB_FspS_laban6_1_NC_048834: hypothetical protein; GFJ99_11610; phage(gi100013)1.02e-35Showinfo_outline
12complement(25450..25818)PHAGE_Flavob_vB_FspS_laban6_1_NC_048834: hypothetical protein; GFJ99_11615; phage(gi100014)1.74e-85Showinfo_outline
13complement(25805..26002)PHAGE_Flavob_vB_FspS_laban6_1_NC_048834: hypothetical protein; GFJ99_11620; phage(gi100015)1.03e-40Showinfo_outline
14complement(26038..26493)PHAGE_Flavob_vB_FspS_laban6_1_NC_048834: hypothetical protein; GFJ99_11625; phage(gi100016)5.82e-108Showinfo_outline
15complement(26477..27382)PHAGE_Flavob_vB_FspS_laban6_1_NC_048834: hypothetical protein; GFJ99_11630; phage(gi100017)0.0Showinfo_outline
16complement(27384..27704)PHAGE_Flavob_vB_FspS_laban6_1_NC_048834: hypothetical protein; GFJ99_11635; phage(gi100018)7.22e-69Showinfo_outline
17complement(27719..28741)PHAGE_Flavob_vB_FspS_laban6_1_NC_048834: hypothetical protein; GFJ99_11640; phage(gi100019)0.0Showinfo_outline
18complement(28743..30122)PHAGE_Flavob_vB_FspS_laban6_1_NC_048834: hypothetical protein; GFJ99_11645; phage(gi100020)0.0Showinfo_outline
19complement(30119..30361)PHAGE_Flavob_vB_FspS_laban6_1_NC_048834: hypothetical protein; GFJ99_11650; phage(gi100021)7.08e-53Showinfo_outline
2030825..31232PHAGE_Flavob_vB_FspS_laban6_1_NC_048834: hypothetical protein; GFJ99_11655; phage(gi100023)1.40e-91Showinfo_outline
2131297..31524PHAGE_Flavob_vB_FspS_laban6_1_NC_048834: hypothetical protein; GFJ99_11660; phage(gi100024)4.32e-48Showinfo_outline
2231514..31720PHAGE_Flavob_vB_FspS_laban6_1_NC_048834: hypothetical protein; GFJ99_11665; phage(gi100025)6.99e-44Showinfo_outline
2331695..32042PHAGE_Flavob_vB_FspS_laban6_1_NC_048834: hypothetical protein; GFJ99_11670; phage(gi100026)3.32e-79Showinfo_outline
2432039..32692PHAGE_Flavob_vB_FspS_laban6_1_NC_048834: hypothetical protein; GFJ99_11675; phage(gi100027)3.21e-163Showinfo_outline
25complement(32742..33734)PHAGE_Flavob_vB_FspS_laban6_1_NC_048834: hypothetical protein; GFJ99_11680; phage(gi100028)0.0Showinfo_outline
26complement(33765..35471)PHAGE_Flavob_vB_FspS_laban6_1_NC_048834: hypothetical protein; GFJ99_11685; phage(gi100029)0.0Showinfo_outline
27complement(35443..36087)PHAGE_Flavob_vB_FspS_laban6_1_NC_048834: hypothetical protein; GFJ99_11690; phage(gi100030)5.32e-153Showinfo_outline
28complement(36077..36400)PHAGE_Flavob_vB_FspS_laban6_1_NC_048834: hypothetical protein; GFJ99_11695; phage(gi100031)1.19e-72Showinfo_outline
29complement(36586..37179)PHAGE_Flavob_vB_FspS_laban6_1_NC_048834: endolysin; GFJ99_11700; phage(gi100033)4.86e-146Showinfo_outline
30complement(37179..38165)PHAGE_Flavob_vB_FspS_laban6_1_NC_048834: holin; GFJ99_11705; phage(gi100034)0.0Showinfo_outline
31complement(38294..39115)PHAGE_Flavob_vB_FspS_laban6_1_NC_048834: hypothetical protein; GFJ99_11710; phage(gi100036)0.0Showinfo_outline
32complement(39145..41298)PHAGE_Flavob_vB_FspS_laban6_1_NC_048834: putative phosphoesterase; GFJ99_11715; phage(gi100037)0.0Showinfo_outline
33complement(41327..42205)PHAGE_Flavob_vB_FspS_laban6_1_NC_048834: hypothetical protein; GFJ99_11720; phage(gi100038)0.0Showinfo_outline
34complement(42231..42833)PHAGE_Flavob_vB_FspS_laban6_1_NC_048834: hypothetical protein; GFJ99_11725; phage(gi100039)2.04e-139Showinfo_outline
35complement(42835..43395)PHAGE_Flavob_vB_FspS_laban6_1_NC_048834: hypothetical protein; GFJ99_11730; phage(gi100040)1.75e-139Showinfo_outline
36complement(43388..43945)PHAGE_Flavob_vB_FspS_laban6_1_NC_048834: DNA adenine methyltransferase; GFJ99_11735; phage(gi100041)2.38e-131Showinfo_outline
37complement(43987..44550)PHAGE_Flavob_vB_FspS_laban6_1_NC_048834: hypothetical protein; GFJ99_11740; phage(gi100042)7.67e-133Showinfo_outline
38complement(44568..45005)PHAGE_Flavob_vB_FspS_laban6_1_NC_048834: hypothetical protein; GFJ99_11745; phage(gi100043)1.68e-104Showinfo_outline
39complement(45007..45393)PHAGE_Flavob_vB_FspS_laban6_1_NC_048834: DNA helicase; GFJ99_11750; phage(gi100044)3.86e-87Showinfo_outline
40complement(45396..47024)PHAGE_Flavob_vB_FspS_laban6_1_NC_048834: putative transcriptional regulator; GFJ99_11755; phage(gi100045)0.0Showinfo_outline
41complement(47027..47518)PHAGE_Flavob_vB_FspS_laban6_1_NC_048834: HNH endonuclease; GFJ99_11760; phage(gi100046)5.09e-117Showinfo_outline
42complement(47617..47919)PHAGE_Flavob_vB_FspS_laban6_1_NC_048834: primase; GFJ99_11765; phage(gi100047)5.43e-69Showinfo_outline
43complement(47916..48149)PHAGE_Flavob_vB_FspS_laban6_1_NC_048834: exonuclease; GFJ99_11770; phage(gi100048)3.71e-49Showinfo_outline
44complement(48152..48718)PHAGE_Flavob_vB_FspS_laban6_1_NC_048834: recombination protein; GFJ99_11775; phage(gi100049)5.92e-139Showinfo_outline
45complement(48736..49212)PHAGE_Flavob_vB_FspS_laban6_1_NC_048834: putative single-stranded DNA binding protein; GFJ99_11780; phage(gi100050)4.16e-115Showinfo_outline
46complement(49209..49400)PHAGE_Flavob_vB_FspS_laban6_1_NC_048834: hypothetical protein; GFJ99_11785; phage(gi100051)1.79e-39Showinfo_outline
47complement(49677..52871)PHAGE_Flavob_vB_FspS_laban6_1_NC_048834: tail fiber protein; GFJ99_11790; phage(gi100052)0.0Showinfo_outline
48complement(52874..53059)PHAGE_Flavob_vB_FspS_laban6_1_NC_048834: tail assembly protein; GFJ99_11795; phage(gi100053)2.54e-34Showinfo_outline
49complement(53149..53721)PHAGE_Flavob_vB_FspS_laban6_1_NC_048834: tail tip protein; GFJ99_11800; phage(gi100054)3.25e-138Showinfo_outline
50complement(53745..53996)PHAGE_Flavob_vB_FspS_laban6_1_NC_048834: minor tail protein; GFJ99_11805; phage(gi100055)9.38e-54Showinfo_outline
5154145..54459PHAGE_Flavob_vB_FspS_laban6_1_NC_048834: tail length tape-measure protein; GFJ99_11810; phage(gi100057)2.62e-69Showinfo_outline
5254500..54520attR0.0Showinfo_outline
Flavobacterium sp. LMO6 NODE_12_length_95344_cov_81.199_ID_11796
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

Viewer Options
Length: 95344 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download