Submission Results

Sequence Name: Not Available

GenBank Accession Number: WJCC01000001.1

GenInfo (GI) Number: 0000000000

Download Results: WJCC01000001.1.PHASTER.zip

gi|00000000|ref|WJCC01000001.1| Bacillus thuringiensis strain 4XX1 660518, gc%: 35.96%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
146.3Kbintact15058551272-597637 info_outlinePHAGE_Bacill_WBeta_NC_007734(41)35.24%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|WJCC01000001.1| Bacillus thuringiensis strain 4XX1 660518, gc%: 35.96%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 60 CDS

#CDS PositionBLAST HitE-ValueSequence
1551272..551284attL0.0Showinfo_outline
2complement(551620..553074)PHAGE_Bacill_Fah_NC_007814: site-specific serine recombinase; GH877_03005; phage(gi89152504)7.21e-176Showinfo_outline
3complement(553172..554035)PHAGE_Bacill_Fah_NC_007814: transcription regulator; GH877_03010; phage(gi89152503)0.0Showinfo_outline
4complement(554048..554167)PHAGE_Bacill_Gamma_NC_007458: hypothetical protein; GH877_03015; phage(gi77020140)1.23e-20Showinfo_outline
5554331..554567PHAGE_Bacill_Fah_NC_007814: transcription regulator; GH877_03020; phage(gi89152502)9.18e-49Showinfo_outline
6complement(554602..555219)PHAGE_Bacill_Fah_NC_007814: hypothetical protein; GH877_03025; phage(gi89152501)8.59e-138Showinfo_outline
7complement(555161..556342)PHAGE_Bacill_Fah_NC_007814: FtsK/SpoIIIE ATPase; GH877_03030; phage(gi89152500)0.0Showinfo_outline
8complement(556460..556642)PHAGE_Bacill_Fah_NC_007814: hypothetical protein; GH877_03035; phage(gi89152499)9.75e-26Showinfo_outline
9complement(556645..556947)PHAGE_Bacill_Fah_NC_007814: hypothetical protein; GH877_03040; phage(gi89152498)1.32e-63Showinfo_outline
10557107..557301PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GH877_03045; phage(gi100025)2.99e-32Showinfo_outline
11557357..557683PHAGE_Bacill_BceA1_NC_048628: hypothetical protein; GH877_03050; phage(gi100024)2.16e-58Showinfo_outline
12complement(557725..558780)PHAGE_Bacill_phBC6A51_NC_004820: N-acetylmuramoyl-L-alanine amidase; GH877_03055; phage(gi31415803)0.0Showinfo_outline
13complement(558777..559016)PHAGE_Bacill_phBC6A51_NC_004820: holin; GH877_03060; phage(gi31415802)6.01e-39Showinfo_outline
14complement(559016..559252)PHAGE_Bacill_phBC6A51_NC_004820: XpaF1 protein; GH877_03065; phage(gi31415801)5.21e-41Showinfo_outline
15complement(559321..563220)PHAGE_Bacill_Fah_NC_007814: structural protein; GH877_03070; phage(gi89152493)0.0Showinfo_outline
16complement(563217..564707)PHAGE_Bacill_Fah_NC_007814: tail protein; GH877_03075; phage(gi89152492)0.0Showinfo_outline
17complement(564722..567340)PHAGE_Bacill_Fah_NC_007814: tail length tape measure protein; GH877_03080; phage(gi89152491)0.0Showinfo_outline
18complement(567517..568833)PHAGE_Bacill_phIS3501_NC_019502: tail tape measure protein; GH877_03085; phage(gi422934338)0.0Showinfo_outline
19complement(568850..569044)PHAGE_Bacill_WBeta_NC_007734: hypothetical protein; GH877_03090; phage(gi85701391)1.14e-32Showinfo_outline
20complement(569056..569373)PHAGE_Bacill_Fah_NC_007814: hypothetical protein; GH877_03095; phage(gi89152490)6.10e-64Showinfo_outline
21complement(569423..570031)PHAGE_Bacill_Fah_NC_007814: major tail protein; GH877_03100; phage(gi89152489)5.74e-128Showinfo_outline
22complement(570032..570391)PHAGE_Bacill_Fah_NC_007814: structural protein; GH877_03105; phage(gi89152488)2.59e-79Showinfo_outline
23complement(570388..570828)PHAGE_Bacill_Fah_NC_007814: head-tail joining protein; GH877_03110; phage(gi89152487)1.46e-102Showinfo_outline
24complement(570821..571144)PHAGE_Bacill_Fah_NC_007814: head-tail adaptor; GH877_03115; phage(gi89152486)1.81e-73Showinfo_outline
25complement(571141..571431)PHAGE_Bacill_Fah_NC_007814: DNA packaging protein; GH877_03120; phage(gi89152485)1.25e-60Showinfo_outline
26complement(571449..572627)PHAGE_Bacill_Fah_NC_007814: major head protein; GH877_03125; phage(gi89152484)0.0Showinfo_outline
27complement(572666..573286)PHAGE_Bacill_Fah_NC_007814: prohead protease; GH877_03130; phage(gi89152483)9.14e-147Showinfo_outline
28complement(573249..574547)PHAGE_Bacill_Fah_NC_007814: portal protein; GH877_03135; phage(gi89152482)0.0Showinfo_outline
29complement(574563..576260)PHAGE_Bacill_Fah_NC_007814: terminase large subunit; GH877_03140; phage(gi89152481)0.0Showinfo_outline
30complement(576257..576742)PHAGE_Bacill_Fah_NC_007814: terminase small subunit; GH877_03145; phage(gi89152480)7.15e-112Showinfo_outline
31complement(576843..577226)PHAGE_Bacill_Fah_NC_007814: HNH endonuclease; GH877_03150; phage(gi89152529)3.50e-89Showinfo_outline
32complement(577226..577492)PHAGE_Bacill_Fah_NC_007814: hypothetical protein; GH877_03155; phage(gi89152528)1.34e-53Showinfo_outline
33complement(577526..577789)PHAGE_Bacill_Fah_NC_007814: hypothetical protein; GH877_03160; phage(gi89152525)7.82e-44Showinfo_outline
34complement(577809..578000)PHAGE_Bacill_Fah_NC_007814: hypothetical protein; GH877_03165; phage(gi89152524)5.09e-38Showinfo_outline
35complement(578106..578516)PHAGE_Bacill_Fah_NC_007814: hypothetical protein; GH877_03170; phage(gi89152523)1.61e-90Showinfo_outline
36complement(578518..578760)hypothetical protein; GH877_031750.0Showinfo_outline
37complement(578765..578986)PHAGE_Bacill_Fah_NC_007814: hypothetical protein; GH877_03180; phage(gi89152522)1.08e-35Showinfo_outline
38complement(578993..579217)PHAGE_Bacill_Fah_NC_007814: distantly related to ECF sigma subunit; GH877_03185; phage(gi89152521)1.57e-37Showinfo_outline
39complement(579337..579732)PHAGE_Bacill_Fah_NC_007814: HTH transcription regulator; GH877_03190; phage(gi89152520)2.63e-88Showinfo_outline
40complement(579905..580027)PHAGE_Bacill_Gamma_NC_007458: conserved phage protein; GH877_03195; phage(gi77020188)2.01e-20Showinfo_outline
41complement(580179..580367)PHAGE_Bacill_Fah_NC_007814: hypothetical protein; GH877_03200; phage(gi89152519)4.30e-32Showinfo_outline
42complement(580354..580644)hypothetical protein; GH877_032050.0Showinfo_outline
43complement(580773..581084)PHAGE_Brevib_Jenst_NC_028805: hypothetical protein; GH877_03210; phage(gi971744972)2.82e-22Showinfo_outline
44complement(581136..581312)PHAGE_Geobac_E3_NC_029073: hypothetical protein; GH877_03215; phage(gi985758466)7.43e-18Showinfo_outline
45complement(581345..581548)PHAGE_Bacter_Lily_NC_028841: hypothetical protein; GH877_03220; phage(gi971748324)9.28e-26Showinfo_outline
46complement(582083..582292)hypothetical protein; GH877_032250.0Showinfo_outline
47complement(582360..582635)PHAGE_Bacill_BMBtpLA_NC_028748: hypothetical protein; GH877_03230; phage(gi971482530)2.08e-56Showinfo_outline
48complement(582672..583214)PHAGE_Anoxyb_A403_NC_048701: holin; GH877_03235; phage(gi100034)8.66e-26Showinfo_outline
49complement(583272..583748)PHAGE_Bacill_WBeta_NC_007734: hypothetical protein; GH877_03240; phage(gi85701417)3.13e-109Showinfo_outline
50complement(583745..584491)PHAGE_Bacill_Fah_NC_007814: sigma70 factor; GH877_03245; phage(gi89152515)1.18e-179Showinfo_outline
51complement(584484..584717)PHAGE_Bacill_Fah_NC_007814: hypothetical protein; GH877_03250; phage(gi89152514)3.06e-40Showinfo_outline
52complement(584736..585647)PHAGE_Bacill_Fah_NC_007814: DnaC, helicase loader; GH877_03255; phage(gi89152513)0.0Showinfo_outline
53complement(585663..586604)PHAGE_Bacill_Fah_NC_007814: DnaA analog, DnaD domain protein; GH877_03260; phage(gi89152512)0.0Showinfo_outline
54complement(586733..587383)PHAGE_Bacill_Fah_NC_007814: hypothetical protein; GH877_03265; phage(gi89152511)1.14e-75Showinfo_outline
55complement(587390..587767)PHAGE_Paenib_Vegas_NC_028767: hypothetical protein; GH877_03270; phage(gi971741622)7.92e-22Showinfo_outline
56complement(587795..588541)PHAGE_Bacill_Fah_NC_007814: antirepressor; GH877_03275; phage(gi89152510)4.45e-101Showinfo_outline
57complement(589043..589270)PHAGE_Bacill_Fah_NC_007814: Cro/CI family transcription regulator; GH877_03280; phage(gi89152507)5.07e-38Showinfo_outline
58589441..589791PHAGE_Bacill_Fah_NC_007814: transcription regulator; GH877_03285; phage(gi89152506)1.88e-58Showinfo_outline
59complement(590133..591362)PHAGE_Bacill_Fah_NC_007814: HTH transcriptional regulator; GH877_03290; phage(gi89152505)0.0Showinfo_outline
60597637..597649attR0.0Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

Viewer Options
Length: 660518 bps
Phages: 1
arrow_upwardarrow_upwardarrow_upward
Click on a region in the genome above to show details here.
Viewer Options
Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download