Submission Results

Sequence Name: Not Available

GenBank Accession Number: WJCT01000001.1

GenInfo (GI) Number: 0000000000

Download Results: WJCT01000001.1.PHASTER.zip

gi|00000000|ref|WJCT01000001.1| Bacillus thuringiensis strain 4K3 594843, gc%: 35.84%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
148.9Kbintact12066368973-417922 info_outlinePHAGE_Lister_2389_NC_003291(14)34.73%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|WJCT01000001.1| Bacillus thuringiensis strain 4K3 594843, gc%: 35.84%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 72 CDS

#CDS PositionBLAST HitE-ValueSequence
1368973..368984attL0.0Showinfo_outline
2complement(372244..373374)PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; GH861_02105; phage(gi100035)7.36e-70Showinfo_outline
3373701..374510hypothetical protein; GH861_021100.0Showinfo_outline
4374511..375380DUF3037 domain-containing protein; GH861_021150.0Showinfo_outline
5375692..375877hypothetical protein; GH861_021200.0Showinfo_outline
6complement(376125..376469)PHAGE_Bacill_phBC6A51_NC_004820: Transcriptional regulator, MerR family; GH861_02125; phage(gi31415741)1.17e-48Showinfo_outline
7376908..378053PHAGE_Bacill_phIS3501_NC_019502: helix-turn-helix protein; GH861_02130; phage(gi422934301)1.84e-63Showinfo_outline
8378055..378189ABC transporter ATP-binding protein; GH861_021350.0Showinfo_outline
9378332..378514hypothetical protein; GH861_021400.0Showinfo_outline
10complement(378511..378867)PHAGE_Bacill_WBeta_NC_007734: helix-turn-helix Cro and cI family protein; GH861_02145; phage(gi85701408)6.03e-18Showinfo_outline
11379036..379230PHAGE_Bacill_BMBtpLA_NC_028748: transcriptional regulator, Cro/CI family protein; GH861_02150; phage(gi971482518)2.96e-10Showinfo_outline
12379289..379300attL0.0Showinfo_outline
13379339..379539PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; GH861_02155; phage(gi100039)1.03e-12Showinfo_outline
14379972..380859PHAGE_Staphy_3MRA_NC_028917: replication initiation; GH861_02160; phage(gi971755503)1.11e-52Showinfo_outline
15380828..381628PHAGE_Bacill_250_NC_029024: DNA replication protein DnaC; GH861_02165; phage(gi971766633)7.95e-162Showinfo_outline
16381633..381911PHAGE_Bacill_phBC6A51_NC_004820: Transcription state regulatory protein abrB; GH861_02170; phage(gi31415778)2.56e-28Showinfo_outline
17381904..382263PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; GH861_02175; phage(gi100025)2.22e-39Showinfo_outline
18382284..382448PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GH861_02180; phage(gi100040)2.57e-13Showinfo_outline
19382476..382727PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GH861_02185; phage(gi100042)1.26e-22Showinfo_outline
20382747..383229PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; GH861_02190; phage(gi100062)2.07e-27Showinfo_outline
21complement(383503..384300)RNA methyltransferase; GH861_021950.0Showinfo_outline
22384559..384768hypothetical protein; GH861_022000.0Showinfo_outline
23385090..385248hypothetical protein; GH861_022050.0Showinfo_outline
24385425..385730hypothetical protein; GH861_022100.0Showinfo_outline
25385741..386007hypothetical protein; GH861_022150.0Showinfo_outline
26386040..386405PHAGE_Bacill_BceA1_NC_048628: exonuclease; GH861_02220; phage(gi100048)3.34e-77Showinfo_outline
27386439..386981PHAGE_Clostr_CDKM15_NC_048643: head morphogenesis protein; GH861_02225; phage(gi100068)4.47e-67Showinfo_outline
28386881..387363PHAGE_Strept_MM1_NC_003050: putative DNA methylase; GH861_02230; phage(gi15088756)5.74e-28Showinfo_outline
29387400..387630PHAGE_Bacill_BMBtpLA_NC_028748: hypothetical protein; GH861_02235; phage(gi971482539)1.78e-12Showinfo_outline
30387751..387999PHAGE_Bacill_phi4J1_NC_029008: hypothetical protein; GH861_02240; phage(gi971821586)3.25e-48Showinfo_outline
31388017..388160hypothetical protein; GH861_022450.0Showinfo_outline
32388623..389093PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GH861_02250; phage(gi100060)8.57e-60Showinfo_outline
33389090..389632PHAGE_Bacill_BtCS33_NC_018085: integrase; GH861_02255; phage(gi392972759)2.91e-69Showinfo_outline
34390204..390215attL0.0Showinfo_outline
35390273..390464PHAGE_Bacill_WBeta_NC_007734: hypothetical protein; GH861_02260; phage(gi85701430)1.23e-28Showinfo_outline
36390464..390958hypothetical protein; GH861_022650.0Showinfo_outline
37390948..391172PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: putative single-stranded DNA binding protein; GH861_02270; phage(gi100050)2.45e-05Showinfo_outline
38391422..391598hypothetical protein; GH861_022750.0Showinfo_outline
39391732..391980hypothetical protein; GH861_022800.0Showinfo_outline
40391991..392338PHAGE_Lister_2389_NC_003291: Gp54 protein; GH861_02285; phage(gi17488559)1.49e-18Showinfo_outline
41392341..392649hypothetical protein; GH861_022900.0Showinfo_outline
42392758..393078PHAGE_Lister_2389_NC_003291: terminase small subunit; GH861_02295; phage(gi17488504)5.24e-10Showinfo_outline
43393122..394741PHAGE_Lister_2389_NC_003291: terminase large subunit; GH861_02300; phage(gi17488505)8.46e-146Showinfo_outline
44394758..395930PHAGE_Lister_2389_NC_003291: hypothetical protein; GH861_02305; phage(gi17488506)3.25e-96Showinfo_outline
45396070..396627PHAGE_Lister_2389_NC_003291: Clp protease; GH861_02310; phage(gi17488507)9.51e-37Showinfo_outline
46396670..397833PHAGE_Lister_2389_NC_003291: major capsid protein a; GH861_02315; phage(gi17488508)6.15e-106Showinfo_outline
47397886..397981hypothetical protein; GH861_023200.0Showinfo_outline
48397974..398270PHAGE_Lister_2389_NC_003291: Gp6 protein; GH861_02325; phage(gi17488509)4.70e-15Showinfo_outline
49398251..398607PHAGE_Lister_2389_NC_003291: Gp7 protein; GH861_02330; phage(gi17488510)8.59e-14Showinfo_outline
50398624..399001hypothetical protein; GH861_023350.0Showinfo_outline
51398988..399416PHAGE_Lister_2389_NC_003291: Gp9 protein; GH861_02340; phage(gi17488512)2.56e-15Showinfo_outline
52399418..400002PHAGE_Lister_2389_NC_003291: major tail protein a; GH861_02345; phage(gi17488513)6.30e-50Showinfo_outline
53400074..400535hypothetical protein; GH861_023500.0Showinfo_outline
54400714..405378PHAGE_Geobac_GBSV1_NC_008376: TMP repeat protein; GH861_02355; phage(gi115334639)1.52e-174Showinfo_outline
55405380..406063PHAGE_Lister_2389_NC_003291: Gp13 protein; GH861_02360; phage(gi17488516)2.73e-43Showinfo_outline
56406063..408468PHAGE_Clostr_phiCT19406C_NC_029006: endopeptidase/tail protein; GH861_02365; phage(gi971821559)7.86e-92Showinfo_outline
57408483..409763PHAGE_Lister_2389_NC_003291: Gp15 protein; GH861_02370; phage(gi17488518)1.76e-06Showinfo_outline
58409916..410140PHAGE_Bacill_phIS3501_NC_019502: phage protein; GH861_02375; phage(gi422934341)7.26e-40Showinfo_outline
59410212..411171PHAGE_Bacill_BtCS33_NC_018085: site-specific recombinase; GH861_02380; phage(gi392972725)0.0Showinfo_outline
60411224..411454PHAGE_Bacill_BeachBum_NC_049961: hypothetical protein; GH861_02385; phage(gi100022)8.46e-33Showinfo_outline
61411451..412515PHAGE_Bacill_phBC6A51_NC_004820: N-acetylmuramoyl-L-alanine amidase; GH861_02390; phage(gi31415803)0.0Showinfo_outline
62complement(412868..413074)PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GH861_02395; phage(gi100025)8.28e-25Showinfo_outline
63413108..413119attR0.0Showinfo_outline
64413237..413539PHAGE_Bacill_WBeta_NC_007734: conserved phage protein; GH861_02400; phage(gi85701399)6.60e-61Showinfo_outline
65413542..413724PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; GH861_02405; phage(gi31415810)1.12e-30Showinfo_outline
66413842..415023PHAGE_Bacill_Gamma_NC_007458: FtsK/SpoIIIE family protein; GH861_02410; phage(gi77020190)0.0Showinfo_outline
67414965..415582PHAGE_Bacill_Gamma_NC_007458: conserved phage protein; GH861_02415; phage(gi77020183)2.31e-122Showinfo_outline
68415867..416367DUF177 domain-containing protein; GH861_024200.0Showinfo_outline
69416429..41660250S ribosomal protein L32; GH861_024250.0Showinfo_outline
70416733..417239PHAGE_Bacill_G_NC_023719: gp631; GH861_02430; phage(gi593778073)1.10e-16Showinfo_outline
71417847..417858attR0.0Showinfo_outline
72417922..417933attR0.0Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 594843 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download