Submission Results

Sequence Name: Not Available

GenBank Accession Number: WJDM01000030.1

GenInfo (GI) Number: 0000000000

Download Results: WJDM01000030.1.PHASTER.zip

gi|00000000|ref|WJDM01000030.1| Bacillus thuringiensis strain 4D2 59148, gc%: 35.40%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
136.4Kbincomplete503822667-59119 info_outlinePHAGE_Bacill_phBC6A52_NC_004821(8)34.82%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|WJDM01000030.1| Bacillus thuringiensis strain 4D2 59148, gc%: 35.40%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 42 CDS

#CDS PositionBLAST HitE-ValueSequence
122667..22679attL0.0Showinfo_outline
235488..35499attL0.0Showinfo_outline
3complement(37234..38358)PHAGE_Bacill_phBC6A52_NC_004821: DNA integration/recombination/invertion protein; GH835_17325; phage(gi31415821)1.99e-87Showinfo_outline
4complement(38517..39380)hypothetical protein; GH835_173300.0Showinfo_outline
539942..41081PHAGE_Bacill_phBC6A52_NC_004821: helix-turn-helix protein; GH835_17335; phage(gi31415822)2.72e-13Showinfo_outline
6complement(41595..41948)PHAGE_Bacill_250_NC_029024: helix-turn-helix domain protein; GH835_17340; phage(gi971766654)6.52e-36Showinfo_outline
742170..42412PHAGE_Bacill_IEBH_NC_011167: helix-turn-helix domain protein; GH835_17345; phage(gi197261594)2.63e-21Showinfo_outline
842409..42759PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; GH835_17350; phage(gi100039)2.71e-06Showinfo_outline
942756..42923PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; GH835_17355; phage(gi31415826)2.82e-27Showinfo_outline
1043134..43874PHAGE_Bacill_phBC6A52_NC_004821: replication protein; GH835_17360; phage(gi31415828)9.64e-129Showinfo_outline
1143822..44685PHAGE_Lister_B054_NC_009813: gp53; GH835_17365; phage(gi157325337)3.16e-43Showinfo_outline
1244688..44882PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; GH835_17370; phage(gi31415830)4.22e-30Showinfo_outline
1344899..45177PHAGE_Bacill_phBC6A51_NC_004820: Transcription state regulatory protein abrB; GH835_17375; phage(gi31415778)8.63e-23Showinfo_outline
1445170..45529PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; GH835_17380; phage(gi100025)1.88e-42Showinfo_outline
1545548..45715PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; GH835_17385; phage(gi31415831)1.83e-19Showinfo_outline
1645741..45992PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GH835_17390; phage(gi100042)1.38e-22Showinfo_outline
1746012..46521PHAGE_Anoxyb_A403_NC_048701: holin; GH835_17395; phage(gi100034)3.26e-30Showinfo_outline
1846562..47035PHAGE_Geobac_E3_NC_029073: hypothetical protein; GH835_17400; phage(gi985758415)4.59e-38Showinfo_outline
1947080..47469hypothetical protein; GH835_174050.0Showinfo_outline
2047505..47702hypothetical protein; GH835_174100.0Showinfo_outline
2147695..48228PHAGE_Bacill_Grass_NC_022771: hypothetical protein; GH835_17415; phage(gi568191792)2.11e-68Showinfo_outline
2248258..48641PHAGE_Bacill_Gamma_NC_007458: conserved phage protein; GH835_17420; phage(gi77020171)7.98e-31Showinfo_outline
2348685..48957PHAGE_Bacill_BceA1_NC_048628: hypothetical protein; GH835_17425; phage(gi100051)1.86e-18Showinfo_outline
2448997..49206PHAGE_Bacill_vB_BmeM_Goe8_NC_048797: tail fibers protein; GH835_17430; phage(gi100171)1.60e-09Showinfo_outline
2549548..49976hypothetical protein; GH835_174350.0Showinfo_outline
2650217..50582PHAGE_Bacill_BceA1_NC_048628: exonuclease; GH835_17440; phage(gi100048)5.90e-80Showinfo_outline
2750828..51025PHAGE_Bacill_BceA1_NC_048628: putative single-stranded DNA binding protein; GH835_17445; phage(gi100050)2.18e-40Showinfo_outline
2851022..51300PHAGE_Bacill_BceA1_NC_048628: hypothetical protein; GH835_17450; phage(gi100051)9.53e-60Showinfo_outline
2951420..51806PHAGE_Bacill_BceA1_NC_048628: tail fiber protein; GH835_17455; phage(gi100052)2.59e-90Showinfo_outline
3052108..52119attR0.0Showinfo_outline
3152133..52615PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; GH835_17460; phage(gi31415839)4.76e-116Showinfo_outline
3252615..53157PHAGE_Bacill_phBC6A52_NC_004821: DNA integration/recombination/invertion protein; GH835_17465; phage(gi31415840)1.74e-129Showinfo_outline
3353803..54045PHAGE_Bacill_BceA1_NC_048628: hypothetical protein; GH835_17470; phage(gi100058)1.17e-43Showinfo_outline
3454038..54472PHAGE_Bacill_BMBtpLA_NC_028748: hypothetical protein; GH835_17475; phage(gi971482545)1.26e-20Showinfo_outline
3554469..54696PHAGE_Bacill_phi4B1_NC_028886: hypothetical protein; GH835_17480; phage(gi971821249)2.62e-10Showinfo_outline
3654701..54865PHAGE_Bacill_Mgbh1_NC_041879: hypothetical protein; GH835_17485; phage(gi100036)4.07e-14Showinfo_outline
3754868..55113hypothetical protein; GH835_174900.0Showinfo_outline
3855094..55507PHAGE_Clostr_phiCTC2B_NC_030951: hypothetical protein; GH835_17495; phage(gi100030)8.41e-34Showinfo_outline
3955607..56128PHAGE_Bacill_phi105_NC_048631: methyltransferase type 11; GH835_17500; phage(gi100001)1.23e-71Showinfo_outline
4056138..57853PHAGE_Clostr_phiCT453B_NC_029004: hypothetical protein; GH835_17505; phage(gi100030)0.0Showinfo_outline
4157867..59087PHAGE_Geobac_E2_NC_009552: putative portal protein; GH835_17510; phage(gi148747730)3.20e-152Showinfo_outline
4259119..59131attR0.0Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 59148 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download