Submission Results

Sequence Name: Not Available

GenBank Accession Number: WJDM01000041.1

GenInfo (GI) Number: 0000000000

Download Results: WJDM01000041.1.PHASTER.zip

gi|00000000|ref|WJDM01000041.1| Bacillus thuringiensis strain 4D2 45153, gc%: 35.44%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
144.9Kbintact13565234-45153 info_outlinePHAGE_Bacill_Waukesha92_NC_025424(65)35.44%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|WJDM01000041.1| Bacillus thuringiensis strain 4D2 45153, gc%: 35.44%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 65 CDS

#CDS PositionBLAST HitE-ValueSequence
1234..1193PHAGE_Bacill_Waukesha92_NC_025424: site-specific recombinase; GH835_20355; phage(gi712912406)0.0Showinfo_outline
21209..1448PHAGE_Bacill_Waukesha92_NC_025424: peptidase; GH835_20360; phage(gi712912405)2.46e-50Showinfo_outline
31491..1721PHAGE_Bacill_Waukesha92_NC_025424: SPP1 family holin; GH835_20365; phage(gi712912404)1.51e-48Showinfo_outline
41738..2673PHAGE_Bacill_Waukesha92_NC_025424: endolysin; GH835_20370; phage(gi712912403)0.0Showinfo_outline
5complement(2968..3252)PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; GH835_20375; phage(gi712912402)3.76e-63Showinfo_outline
6complement(3687..3920)PHAGE_Bacill_Waukesha92_NC_025424: DNA binding protein; GH835_20380; phage(gi712912401)6.26e-51Showinfo_outline
7complement(4006..4536)PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; GH835_20385; phage(gi712912400)5.05e-127Showinfo_outline
8complement(4548..4928)PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; GH835_20390; phage(gi712912399)1.58e-90Showinfo_outline
9complement(5046..5378)PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; GH835_20395; phage(gi712912398)1.43e-71Showinfo_outline
10complement(5338..6369)PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; GH835_20400; phage(gi712912397)0.0Showinfo_outline
11complement(6652..7314)PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; GH835_20405; phage(gi712912396)1.64e-161Showinfo_outline
12complement(7338..8441)PHAGE_Bacill_Waukesha92_NC_025424: DNAD domain protein; GH835_20410; phage(gi712912395)0.0Showinfo_outline
13complement(9041..9385)PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; GH835_20415; phage(gi712912394)2.84e-69Showinfo_outline
14complement(9405..9932)PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; GH835_20420; phage(gi712912393)2.23e-122Showinfo_outline
15complement(10543..10860)PHAGE_Bacill_Waukesha92_NC_025424: transcriptional regulator; GH835_20425; phage(gi712912392)2.79e-71Showinfo_outline
1611425..12612PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; GH835_20430; phage(gi712912391)0.0Showinfo_outline
17complement(13100..13450)PHAGE_Bacill_Waukesha92_NC_025424: transcriptional regulator; GH835_20435; phage(gi712912388)5.95e-79Showinfo_outline
1813664..13861PHAGE_Bacill_Waukesha92_NC_025424: repressor protein; GH835_20440; phage(gi712912387)1.52e-40Showinfo_outline
1913928..14656PHAGE_Bacill_Waukesha92_NC_025424: putative rha family phage regulatory protein; GH835_20445; phage(gi712912386)0.0Showinfo_outline
2014668..15042PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; GH835_20450; phage(gi712912385)1.26e-84Showinfo_outline
2115066..15773PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; GH835_20455; phage(gi712912384)3.52e-174Showinfo_outline
2215773..15952PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; GH835_20460; phage(gi712912383)7.34e-18Showinfo_outline
2315942..16271PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; GH835_20465; phage(gi712912382)3.76e-73Showinfo_outline
2416417..16920PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; GH835_20470; phage(gi712912381)1.36e-120Showinfo_outline
2516889..17272PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; GH835_20475; phage(gi712912380)1.50e-91Showinfo_outline
2617292..17648PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; GH835_20480; phage(gi712912379)4.53e-84Showinfo_outline
2717672..18139PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; GH835_20485; phage(gi712912378)1.47e-112Showinfo_outline
2818253..18690PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; GH835_20490; phage(gi712912377)6.01e-65Showinfo_outline
2918690..19142PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; GH835_20495; phage(gi712912376)1.59e-110Showinfo_outline
3019139..19720PHAGE_Bacill_Waukesha92_NC_025424: dUTPase; GH835_20500; phage(gi712912375)7.84e-143Showinfo_outline
3119742..20224PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; GH835_20505; phage(gi712912374)2.11e-114Showinfo_outline
3220358..20657PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; GH835_20510; phage(gi712912373)1.64e-65Showinfo_outline
3320886..21293PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; GH835_20515; phage(gi712912370)2.09e-93Showinfo_outline
3421895..22140PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; GH835_20520; phage(gi712912368)2.59e-51Showinfo_outline
3522190..22414PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; GH835_20525; phage(gi712912367)2.41e-49Showinfo_outline
3622456..22833PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; GH835_20530; phage(gi712912366)8.65e-87Showinfo_outline
3722958..23140PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; GH835_20535; phage(gi712912365)1.44e-38Showinfo_outline
3823171..23701PHAGE_Bacill_Waukesha92_NC_025424: recombinase RecU; GH835_20540; phage(gi712912364)7.93e-129Showinfo_outline
3923721..24044PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; GH835_20545; phage(gi712912363)5.38e-74Showinfo_outline
4024189..24689PHAGE_Bacill_Waukesha92_NC_025424: sigma-70 family RNA polymerase sigma factor; GH835_20550; phage(gi712912362)2.70e-121Showinfo_outline
4125582..25824PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; GH835_20555; phage(gi712912360)6.89e-51Showinfo_outline
4225817..26083PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; GH835_20560; phage(gi712912359)2.06e-57Showinfo_outline
4326222..26464PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; GH835_20565; phage(gi712912358)2.27e-53Showinfo_outline
4426464..26727PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; GH835_20570; phage(gi712912357)2.72e-57Showinfo_outline
4526987..27307PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; GH835_20575; phage(gi712912356)5.26e-74Showinfo_outline
4627335..27718PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; GH835_20580; phage(gi712912355)7.49e-91Showinfo_outline
4727751..28080PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; GH835_20585; phage(gi712912426)1.82e-67Showinfo_outline
4828067..28279PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; GH835_20590; phage(gi712912425)1.50e-43Showinfo_outline
4928430..29344PHAGE_Bacill_Waukesha92_NC_025424: terminase small subunit; GH835_20595; phage(gi712912424)0.0Showinfo_outline
5029334..30608PHAGE_Bacill_Waukesha92_NC_025424: terminase large subunit; GH835_20600; phage(gi712912423)0.0Showinfo_outline
5130621..32054PHAGE_Bacill_Waukesha92_NC_025424: portal protein; GH835_20605; phage(gi712912422)0.0Showinfo_outline
5232128..32895PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; GH835_20610; phage(gi712912421)0.0Showinfo_outline
5332895..33167PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; GH835_20615; phage(gi712912420)7.56e-63Showinfo_outline
5433247..33927PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; GH835_20620; phage(gi712912419)4.30e-165Showinfo_outline
5533945..34787PHAGE_Bacill_Waukesha92_NC_025424: coat protein; GH835_20625; phage(gi712912418)0.0Showinfo_outline
5634838..35146PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; GH835_20630; phage(gi712912417)1.69e-68Showinfo_outline
5735143..35487PHAGE_Bacill_Waukesha92_NC_025424: head-tail adaptor protein; GH835_20635; phage(gi712912416)2.40e-81Showinfo_outline
5835462..35869PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; GH835_20640; phage(gi712912415)2.20e-96Showinfo_outline
5935875..36237PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; GH835_20645; phage(gi712912414)3.81e-85Showinfo_outline
6036252..36845PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; GH835_20650; phage(gi712912413)8.51e-141Showinfo_outline
6136892..37320PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; GH835_20655; phage(gi712912412)2.44e-98Showinfo_outline
6237425..37631PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; GH835_20660; phage(gi712912411)1.66e-45Showinfo_outline
6337632..40571PHAGE_Bacill_Waukesha92_NC_025424: tail tape measure protein; GH835_20665; phage(gi712912410)0.0Showinfo_outline
6440584..42062PHAGE_Bacill_Waukesha92_NC_025424: tail fiber protein; GH835_20670; phage(gi712912409)0.0Showinfo_outline
6542059..45153PHAGE_Bacill_Waukesha92_NC_025424: structural protein; GH835_20675; phage(gi712912408)0.0Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

Viewer Options
Length: 45153 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download