Submission Results

Sequence Name: Not Available

GenBank Accession Number: WJDO01000005.1

GenInfo (GI) Number: 0000000000

Download Results: WJDO01000005.1.PHASTER.zip

gi|00000000|ref|WJDO01000005.1| Bacillus thuringiensis strain 4B1 239449, gc%: 35.07%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
156.7Kbintact1506117890-74629 info_outlinePHAGE_Bacill_phBC6A51_NC_004820(11)34.98%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|WJDO01000005.1| Bacillus thuringiensis strain 4B1 239449, gc%: 35.07%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 66 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(17890..18513)PROPHAGE_Brucel_1330: transposase, putative; GH820_08080; phage(gi23502708)2.44e-23Showinfo_outline
2complement(18868..20097)aminopeptidase; GH820_080850.0Showinfo_outline
3complement(20214..21296)polysaccharide deacetylase family protein; GH820_080900.0Showinfo_outline
4complement(21470..22666)NupC/NupG family nucleoside CNT transporter; GH820_080950.0Showinfo_outline
522783..22794attL0.0Showinfo_outline
623070..2447023S rRNA (uracil(1939)-C(5))-methyltransferase RlmD; GH820_081000.0Showinfo_outline
7complement(24529..25653)PHAGE_Paenib_Jacopo_NC_048718: hypothetical protein; GH820_08105; phage(gi100036)1.13e-87Showinfo_outline
825787..25798attL0.0Showinfo_outline
925911..26372PHAGE_Strept_phiARI0131_2_NC_031941: hypothetical protein; GH820_08110; phage(gi100036)3.16e-24Showinfo_outline
10complement(26500..26844)PHAGE_Bacill_phBC6A51_NC_004820: Transcriptional regulator, MerR family; GH820_08115; phage(gi31415741)3.77e-29Showinfo_outline
1127335..28534PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; GH820_08120; phage(gi712912391)1.28e-77Showinfo_outline
12complement(29031..29393)PHAGE_Bacill_BMBtpLA_NC_028748: XRE family transcriptional regulator; GH820_08125; phage(gi971482517)1.29e-29Showinfo_outline
1329562..29765PHAGE_Bacill_BMBtpLA_NC_028748: transcriptional regulator, Cro/CI family protein; GH820_08130; phage(gi971482518)1.91e-22Showinfo_outline
1429832..30563PHAGE_Bacill_PfEFR_5_NC_031055: holin; GH820_08135; phage(gi100034)4.99e-168Showinfo_outline
1530608..30958PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; GH820_08140; phage(gi100039)3.76e-07Showinfo_outline
1630955..31122PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; GH820_08145; phage(gi100008)1.74e-30Showinfo_outline
1731333..32217PHAGE_Bacill_Gamma_NC_007458: phage replisome organizer protein, putative; GH820_08150; phage(gi77020151)6.49e-122Showinfo_outline
1832232..33146PHAGE_Bacill_Gamma_NC_007458: phage replication protein, putative; GH820_08155; phage(gi77020153)0.0Showinfo_outline
1933159..33353PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GH820_08160; phage(gi100039)6.66e-35Showinfo_outline
2033369..33647PHAGE_Bacill_phBC6A51_NC_004820: Transcription state regulatory protein abrB; GH820_08165; phage(gi31415778)6.33e-23Showinfo_outline
2133640..33999PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; GH820_08170; phage(gi100025)2.57e-42Showinfo_outline
2234019..34186PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GH820_08175; phage(gi100040)3.66e-18Showinfo_outline
2334212..34463PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GH820_08180; phage(gi100042)1.72e-23Showinfo_outline
2434483..34965PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; GH820_08185; phage(gi100062)1.18e-27Showinfo_outline
2535299..35454hypothetical protein; GH820_081900.0Showinfo_outline
2635874..36101hypothetical protein; GH820_081950.0Showinfo_outline
2736144..36443PHAGE_Bacill_Gamma_NC_007458: hypothetical protein; GH820_08200; phage(gi77020178)1.54e-63Showinfo_outline
2836492..36677hypothetical protein; GH820_082050.0Showinfo_outline
2936929..37111hypothetical protein; GH820_082100.0Showinfo_outline
3037401..37730permease; GH820_082150.0Showinfo_outline
3137748..37870PHAGE_Bacill_Gamma_NC_007458: conserved phage protein; GH820_08220; phage(gi77020188)9.05e-06Showinfo_outline
3237898..38089hypothetical protein; GH820_082250.0Showinfo_outline
3338397..38879PHAGE_Bacill_phIS3501_NC_019502: ArpU family phage transcriptional regulator; GH820_08230; phage(gi422934318)9.17e-99Showinfo_outline
3438879..39421PHAGE_Bacill_phiCM3_NC_023599: integrase; GH820_08235; phage(gi589892763)2.24e-121Showinfo_outline
3540158..40376PHAGE_Bacill_phIS3501_NC_019502: phage protein; GH820_08240; phage(gi422934324)8.27e-38Showinfo_outline
3640383..40655hypothetical protein; GH820_082450.0Showinfo_outline
3740651..40986PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; GH820_08250; phage(gi100004)8.48e-39Showinfo_outline
3841110..41421PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; GH820_08255; phage(gi100005)2.07e-24Showinfo_outline
3941418..43085PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; GH820_08260; phage(gi100006)0.0Showinfo_outline
4043094..44239PHAGE_Lister_LP_101_NC_024387: portal protein; GH820_08265; phage(gi658607813)5.17e-110Showinfo_outline
4144239..44982PHAGE_Lister_2389_NC_003291: Clp protease; GH820_08270; phage(gi17488507)6.12e-56Showinfo_outline
4244986..46140PHAGE_Lister_LP_101_NC_024387: major capsid protein; GH820_08275; phage(gi658607815)1.08e-94Showinfo_outline
4346146..46439PHAGE_Lister_LP_HM00113468_NC_049900: tail tip protein; GH820_08280; phage(gi100054)4.49e-17Showinfo_outline
4446441..46794PHAGE_Geobac_E2_NC_009552: putative head-tail adaptor; GH820_08285; phage(gi148747735)3.69e-24Showinfo_outline
4546796..47125PHAGE_Strept_PH10_NC_012756: hypothetical protein; GH820_08290; phage(gi238821357)1.32e-25Showinfo_outline
4647125..47454PHAGE_Bacill_1_NC_009737: putative aminopeptidase; GH820_08295; phage(gi155042942)9.15e-30Showinfo_outline
4747455..48048PHAGE_Geobac_GBSV1_NC_008376: major tail protein; GH820_08300; phage(gi115334636)4.67e-53Showinfo_outline
4848055..48411PHAGE_Bacill_1_NC_009737: hypothetical protein; GH820_08305; phage(gi155042944)2.20e-36Showinfo_outline
4948642..52277PHAGE_Geobac_GBSV1_NC_008376: TMP repeat protein; GH820_08310; phage(gi115334639)0.0Showinfo_outline
5052319..53800PHAGE_Bacill_vB_BceS_MY192_NC_048633: tail fiber protein; GH820_08315; phage(gi100052)0.0Showinfo_outline
5153797..57807PHAGE_Bacill_vB_BceS_MY192_NC_048633: tail assembly protein; GH820_08320; phage(gi100053)0.0Showinfo_outline
5257830..58279PHAGE_Bacill_vB_BceS_MY192_NC_048633: tail tip protein; GH820_08325; phage(gi100054)2.90e-105Showinfo_outline
5358374..58610PHAGE_Bacill_phBC6A51_NC_004820: XpaF1 protein; GH820_08330; phage(gi31415801)5.21e-41Showinfo_outline
5458610..58849PHAGE_Bacill_phBC6A51_NC_004820: holin; GH820_08335; phage(gi31415802)3.68e-39Showinfo_outline
5558846..59910PHAGE_Bacill_phBC6A51_NC_004820: N-acetylmuramoyl-L-alanine amidase; GH820_08340; phage(gi31415803)0.0Showinfo_outline
5660425..61273PHAGE_Bordet_vB_BbrM_PHB04_NC_047861: exonuclease; GH820_08345; phage(gi100048)6.03e-09Showinfo_outline
57complement(61400..61891)PHAGE_Bacill_Gamma_NC_007458: hypothetical protein; GH820_08350; phage(gi77020142)7.35e-90Showinfo_outline
58complement(61884..62096)PHAGE_Bacill_Gamma_NC_007458: repressor protein, putative; GH820_08355; phage(gi77020166)3.61e-44Showinfo_outline
5962280..62582PHAGE_Bacill_Gamma_NC_007458: conserved phage protein; GH820_08360; phage(gi77020165)2.23e-66Showinfo_outline
6062585..62767PHAGE_Bacill_Gamma_NC_007458: conserved phage protein; GH820_08365; phage(gi77020186)4.29e-26Showinfo_outline
6162883..64064PHAGE_Bacill_Gamma_NC_007458: FtsK/SpoIIIE family protein; GH820_08370; phage(gi77020190)0.0Showinfo_outline
6264006..64629PHAGE_Bacill_Gamma_NC_007458: conserved phage protein; GH820_08375; phage(gi77020183)1.98e-86Showinfo_outline
6364941..65930tRNA-dihydrouridine synthase; GH820_083800.0Showinfo_outline
6466447..69227PHAGE_Bacill_SP_15_NC_031245: prohead protease; GH820_08385; phage(gi100150)2.04e-11Showinfo_outline
6574579..74590attR0.0Showinfo_outline
6674629..74640attR0.0Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 239449 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download