Submission Results

Sequence Name: Not Available

GenBank Accession Number: WJDR01000013.1

GenInfo (GI) Number: 0000000000

Download Results: WJDR01000013.1.PHASTER.zip

gi|00000000|ref|WJDR01000013.1| Bacillus thuringiensis strain 4A2 142505, gc%: 36.28%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 0 regions are intact, 0 regions are incomplete, and 1 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
145Kbquestionable705759905-104965 info_outlinePHAGE_Bacill_BceA1_NC_048628(15)37.69%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|WJDR01000013.1| Bacillus thuringiensis strain 4A2 142505, gc%: 36.28%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 59 CDS

#CDS PositionBLAST HitE-ValueSequence
159905..60957PHAGE_Synech_S_SM2_NC_015279: zinc-containing alcohol dehydrogenase superfamily protein; GH838_16380; phage(gi326781942)1.52e-22Showinfo_outline
261076..61420PHAGE_Lactob_PLE2_NC_031036: hypothetical protein; GH838_16385; phage(gi100027)3.87e-06Showinfo_outline
361674..62525phospholipase C; GH838_163900.0Showinfo_outline
462602..63648PHAGE_Staphy_AJ_2017_NC_048644: methyltransferase type 11; GH838_16395; phage(gi100001)9.97e-05Showinfo_outline
563552..63571attL0.0Showinfo_outline
6complement(63587..64687)PHAGE_Bacill_BceA1_NC_048628: hypothetical protein; GH838_16400; phage(gi100030)0.0Showinfo_outline
765514..66716PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; GH838_16405; phage(gi100003)3.01e-109Showinfo_outline
8complement(67059..67403)PHAGE_Bacill_BceA1_NC_048628: endolysin; GH838_16410; phage(gi100033)3.80e-78Showinfo_outline
967552..67788PHAGE_Bacill_BceA1_NC_048628: holin; GH838_16415; phage(gi100034)3.28e-48Showinfo_outline
1067821..68009PHAGE_Bacill_BceA1_NC_048628: hypothetical protein; GH838_16420; phage(gi100035)4.25e-33Showinfo_outline
1168030..68677PHAGE_Bacill_BceA1_NC_048628: hypothetical protein; GH838_16425; phage(gi100040)4.96e-116Showinfo_outline
1268955..69248PHAGE_Bacill_BceA1_NC_048628: hypothetical protein; GH838_16430; phage(gi100039)1.21e-36Showinfo_outline
1369270..69530hypothetical protein; GH838_164350.0Showinfo_outline
1469602..70030hypothetical protein; GH838_164400.0Showinfo_outline
1570138..70332hypothetical protein; GH838_164450.0Showinfo_outline
1670411..71346PHAGE_Thermu_OH2_NC_021784: phage-type endonuclease; GH838_16450; phage(gi526118352)4.40e-131Showinfo_outline
1771368..72174PHAGE_Thermu_OH2_NC_021784: RecT protein; GH838_16455; phage(gi526118350)5.19e-130Showinfo_outline
1872346..73149PHAGE_Bacill_vB_BhaS_171_NC_030904: tail fiber protein; GH838_16460; phage(gi100052)2.13e-49Showinfo_outline
1973247..73990PHAGE_Lister_B054_NC_009813: gp53; GH838_16465; phage(gi157325337)2.01e-46Showinfo_outline
2074014..74523PHAGE_Bacill_G_NC_023719: gp577; GH838_16470; phage(gi593778019)1.75e-09Showinfo_outline
2174536..74961PHAGE_Anoxyb_A403_NC_048701: endolysin; GH838_16475; phage(gi100033)1.24e-38Showinfo_outline
2274977..75645PHAGE_Lister_B054_NC_009813: gp58; GH838_16480; phage(gi157325342)1.52e-12Showinfo_outline
2375635..76357PHAGE_Bacill_BceA1_NC_048628: tail tip protein; GH838_16485; phage(gi100054)4.54e-11Showinfo_outline
2476523..76789helix-turn-helix domain-containing protein; GH838_164900.0Showinfo_outline
2576773..77507PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; GH838_16495; phage(gi100016)8.33e-56Showinfo_outline
2678083..78265PHAGE_Bacill_BSP38_NC_048726: D14 protein; GH838_16500; phage(gi100133)1.26e-06Showinfo_outline
2778300..79097PHAGE_Staphy_37_NC_007055: ORF016; GH838_16505; phage(gi66395745)5.83e-87Showinfo_outline
2879767..80141PHAGE_Bacill_phi105_NC_048631: HNH endonuclease; GH838_16510; phage(gi100046)3.94e-24Showinfo_outline
2980503..80718hypothetical protein; GH838_165150.0Showinfo_outline
3081003..81158PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; GH838_16520; phage(gi31415775)4.23e-14Showinfo_outline
3181244..81426hypothetical protein; GH838_165250.0Showinfo_outline
3281579..82151PHAGE_Escher_500465_1_NC_049342: hypothetical protein; GH838_16530; phage(gi100035)4.16e-60Showinfo_outline
3382194..82730PHAGE_Lactoc_98201_NC_031064: hypothetical protein; GH838_16535; phage(gi100030)7.92e-51Showinfo_outline
3482744..84159PHAGE_Bacill_Pascal_NC_027372: hypothetical protein; GH838_16540; phage(gi100002)0.0Showinfo_outline
3584156..84386hypothetical protein; GH838_165450.0Showinfo_outline
3684400..84600hypothetical protein; GH838_165500.0Showinfo_outline
3784658..86781PHAGE_Arthro_Adat_NC_042020: hypothetical protein; GH838_16555; phage(gi100013)3.28e-42Showinfo_outline
3886782..87057PHAGE_Bacill_BceA1_NC_048628: hypothetical protein; GH838_16560; phage(gi100061)1.60e-28Showinfo_outline
3987057..87308PHAGE_Lactob_Lb_NC_047983: hypothetical protein; GH838_16565; phage(gi100024)9.88e-16Showinfo_outline
4087308..87568PHAGE_Bacill_BceA1_NC_048628: hypothetical protein; GH838_16570; phage(gi100007)1.30e-20Showinfo_outline
4187568..87822PHAGE_Pectob_Khlen_NC_048117: methyltransferase type 11; GH838_16575; phage(gi100001)1.69e-12Showinfo_outline
4287906..88754MFS transporter; GH838_165800.0Showinfo_outline
4388770..89960PHAGE_Arthro_Adat_NC_042020: hypothetical protein; GH838_16585; phage(gi100015)1.91e-48Showinfo_outline
4490013..904832,3-dihydroxybenzoate--AMP ligase; GH838_165900.0Showinfo_outline
4590440..91012hypothetical protein; GH838_165950.0Showinfo_outline
4691029..92537PHAGE_Bacill_Pascal_NC_027372: hypothetical protein; GH838_16600; phage(gi100014)1.45e-12Showinfo_outline
4792512..92919antibiotic synthesis protein MbtH; GH838_166050.0Showinfo_outline
4892931..94355hypothetical protein; GH838_166100.0Showinfo_outline
4994368..98636PHAGE_Bacill_Pascal_NC_027372: hypothetical protein; GH838_16615; phage(gi100019)3.36e-150Showinfo_outline
5098688..98918PHAGE_Bacill_BeachBum_NC_049961: hypothetical protein; GH838_16620; phage(gi100022)1.57e-27Showinfo_outline
5198918..99622PHAGE_Bacill_phiCM3_NC_023599: N-acetylmuramoyl-L-alanine amidase; GH838_16625; phage(gi589892730)1.93e-141Showinfo_outline
52complement(99749..100147)DUF3221 domain-containing protein; GH838_166300.0Showinfo_outline
53complement(100945..101169)PHAGE_Bacill_BceA1_NC_048628: hypothetical protein; GH838_16635; phage(gi100025)5.22e-11Showinfo_outline
54101493..101624PHAGE_Bacill_phiCM3_NC_023599: hypothetical protein; GH838_16640; phage(gi589892732)4.03e-24Showinfo_outline
55101644..101964PHAGE_Bacill_BceA1_NC_048628: hypothetical protein; GH838_16645; phage(gi100026)8.08e-71Showinfo_outline
56101975..103141PHAGE_Bacill_BceA1_NC_048628: hypothetical protein; GH838_16650; phage(gi100027)0.0Showinfo_outline
57103131..103739PHAGE_Bacill_BceA1_NC_048628: hypothetical protein; GH838_16655; phage(gi100028)1.73e-144Showinfo_outline
58complement(103744..104625)PHAGE_Bacill_BceA1_NC_048628: hypothetical protein; GH838_16660; phage(gi100029)0.0Showinfo_outline
59104965..104984attR0.0Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 142505 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download