Submission Results

Sequence Name: Not Available

GenBank Accession Number: WJPT01000001.1

GenInfo (GI) Number: 0000000000

Download Results: WJPT01000001.1.PHASTER.zip

gi|00000000|ref|WJPT01000001.1| Pseudomonas syringae strain P77 CL_7701, whole genome shotgun 1133713, gc%: 59.61%

Download summary as .txt file: summary.txt file_download

Total: 2 prophage regions have been identified, of which 1 regions are intact, 1 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
156.4Kbintact15066663597-720041 info_outlinePHAGE_Pseudo_phiPSA1_NC_024365(11)57.20%Show info_outline
210.6Kbincomplete3012821625-832257 info_outlinePHAGE_Bacill_G_NC_023719(2)57.97%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|WJPT01000001.1| Pseudomonas syringae strain P77 CL_7701, whole genome shotgun 1133713, gc%: 59.61%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 68 CDS

#CDS PositionBLAST HitE-ValueSequence
1663597..663608attL0.0Showinfo_outline
2complement(672659..673639)PHAGE_Pseudo_phiPSA1_NC_024365: hypothetical protein; PscP77CL_02335; phage(gi658307717)0.0Showinfo_outline
3complement(673691..673903)PHAGE_Pseudo_phiPSA1_NC_024365: hypothetical protein; PscP77CL_02340; phage(gi658307717)2.69e-34Showinfo_outline
4complement(673900..674079)PHAGE_Pseudo_phiPSA1_NC_024365: hypothetical protein; PscP77CL_02345; phage(gi658307724)1.22e-15Showinfo_outline
5complement(674166..674960)PHAGE_Burkho_KS9_NC_013055: DNA adenine methylase gp25; PscP77CL_02350; phage(gi255033757)1.54e-123Showinfo_outline
6complement(675251..675781)PHAGE_Pseudo_phiPSA1_NC_024365: hypothetical protein; PscP77CL_02355; phage(gi658307723)2.83e-63Showinfo_outline
7complement(675778..676323)PHAGE_Pseudo_phiPSA1_NC_024365: glycoside hydrolase family 19 protein; PscP77CL_02360; phage(gi658307722)1.82e-96Showinfo_outline
8complement(676373..677713)PHAGE_Pseudo_phiPSA1_NC_024365: tail fiber protein; PscP77CL_02365; phage(gi658307714)9.48e-50Showinfo_outline
9complement(677737..678423)PHAGE_Pseudo_phiPSA1_NC_024365: hypothetical protein; PscP77CL_02370; phage(gi658307713)1.46e-26Showinfo_outline
10complement(678423..678731)PHAGE_Pseudo_phiPSA1_NC_024365: hypothetical protein; PscP77CL_02375; phage(gi658307720)5.47e-06Showinfo_outline
11complement(678740..682435)PHAGE_Entero_HK633_NC_019719: central tail fiber; PscP77CL_02380; phage(gi428782540)0.0Showinfo_outline
12complement(682490..683077)PHAGE_Escher_HK639_NC_016158: tail assembly protein; PscP77CL_02385; phage(gi356870622)7.60e-53Showinfo_outline
13complement(683074..683856)PHAGE_Psychr_Psymv2_NC_023734: phage tail assembly protein; PscP77CL_02390; phage(gi593779780)2.90e-61Showinfo_outline
14complement(683859..684557)PHAGE_Entero_HK225_NC_019717: minor tail protein; PscP77CL_02395; phage(gi428782393)9.55e-55Showinfo_outline
15complement(684594..684938)PHAGE_Pseudo_YMC11/02/R656_NC_028657: minor tail protein M; PscP77CL_02400; phage(gi966197864)6.63e-26Showinfo_outline
16complement(684938..687511)PHAGE_Pseudo_PMG1_NC_016765: tail tape measure protein; PscP77CL_02405; phage(gi374531664)0.0Showinfo_outline
17complement(687762..688199)PHAGE_Entero_mEp235_NC_019708: tail assembly chaperone; PscP77CL_02410; phage(gi428781823)7.17e-50Showinfo_outline
18complement(688209..688709)PHAGE_Pseudo_PMG1_NC_016765: putative major tail protein; PscP77CL_02415; phage(gi374531661)2.69e-76Showinfo_outline
19complement(688773..689141)PHAGE_Pseudo_PMG1_NC_016765: hypothetical protein; PscP77CL_02420; phage(gi374531660)8.01e-47Showinfo_outline
20complement(689141..689626)PHAGE_Pseudo_PMG1_NC_016765: hypothetical protein; PscP77CL_02425; phage(gi374531659)3.04e-72Showinfo_outline
21complement(689619..689957)PHAGE_Pseudo_PAJU2_NC_011373: putative head-tail adaptor; PscP77CL_02430; phage(gi209552428)3.56e-37Showinfo_outline
22complement(689957..690433)PHAGE_Psychr_Psymv2_NC_023734: phage head-tail connector; PscP77CL_02435; phage(gi593779766)6.55e-21Showinfo_outline
23complement(690437..690853)PHAGE_Pseudo_PMG1_NC_016765: hypothetical protein; PscP77CL_02440; phage(gi374531652)1.42e-07Showinfo_outline
24complement(690904..692097)PHAGE_Pseudo_PMG1_NC_016765: major capsid protein; PscP77CL_02445; phage(gi374531651)0.0Showinfo_outline
25complement(692094..692957)PHAGE_Pseudo_D3_NC_002484: ClpP protease; PscP77CL_02450; phage(gi9635590)2.67e-90Showinfo_outline
26complement(692961..694106)PHAGE_Pseudo_D3_NC_002484: portal protein; PscP77CL_02455; phage(gi9635589)3.38e-152Showinfo_outline
27694105..694416hypothetical protein; PscP77CL_024600.0Showinfo_outline
28complement(694425..696158)PHAGE_Burkho_phi6442_NC_009235: gp2, phage terminase, large subunit, putative; PscP77CL_02465; phage(gi134288625)0.0Showinfo_outline
29complement(696159..696644)PHAGE_Burkho_phi1026b_NC_005284: gp1; PscP77CL_02470; phage(gi38707891)5.55e-62Showinfo_outline
30complement(696812..697207)PHAGE_Bacill_phi105_NC_004167: hypothetical protein; PscP77CL_02475; phage(gi22855043)6.76e-41Showinfo_outline
31complement(697198..697377)hypothetical protein; PscP77CL_024800.0Showinfo_outline
32complement(697438..697791)PHAGE_Pseudo_phiPSA1_NC_024365: lipoprotein; PscP77CL_02485; phage(gi658307755)1.24e-45Showinfo_outline
33complement(697791..698162)PHAGE_Pseudo_phiPSA1_NC_024365: chemotaxis protein; PscP77CL_02490; phage(gi658307754)1.73e-66Showinfo_outline
34698307..699041hypothetical protein; PscP77CL_024950.0Showinfo_outline
35complement(699086..699469)PHAGE_Pseudo_vB_PaeP_Tr60_Ab31_NC_023575: Putative antitermination Q protein; PscP77CL_02500; phage(gi589286935)3.81e-17Showinfo_outline
36complement(699472..699792)PHAGE_Pseudo_MD8_NC_031091: hypothetical protein; PscP77CL_02505; phage(gi100058)7.06e-18Showinfo_outline
37complement(699789..700004)hypothetical protein; PscP77CL_025100.0Showinfo_outline
38complement(700021..701301)PHAGE_Vibrio_X29_NC_024369: integrase; PscP77CL_02515; phage(gi658311188)4.32e-76Showinfo_outline
39complement(701298..701729)PHAGE_Butyri_Arawn_NC_048848: HNH endonuclease; PscP77CL_02520; phage(gi100046)5.06e-24Showinfo_outline
40complement(701726..702022)PHAGE_Pectob_ZF40_NC_019522: hypothetical protein; PscP77CL_02525; phage(gi422936664)1.41e-32Showinfo_outline
41complement(702019..702690)PHAGE_Pseudo_MD8_NC_031091: minor tail protein; PscP77CL_02530; phage(gi100055)8.64e-52Showinfo_outline
42complement(702687..703460)PHAGE_Arthro_Kepler_NC_048100: primase; PscP77CL_02535; phage(gi100047)7.50e-13Showinfo_outline
43703663..703908hypothetical protein; PscP77CL_025400.0Showinfo_outline
44complement(704122..704361)PHAGE_Shigel_Stx_NC_029120: hypothetical protein; PscP77CL_02545; phage(gi985761259)3.11e-11Showinfo_outline
45704445..705152PHAGE_Entero_DE3_NC_042057: hypothetical protein; PscP77CL_02550; phage(gi100021)1.27e-47Showinfo_outline
46705305..706498PHAGE_Klebsi_ST13_OXA48phi12.1_NC_049453: putative phosphoesterase; PscP77CL_02555; phage(gi100037)2.65e-20Showinfo_outline
47706501..707010hypothetical protein; PscP77CL_025600.0Showinfo_outline
48complement(707065..707306)DUF1652 domain-containing protein; PscP77CL_025650.0Showinfo_outline
49complement(707475..708083)hypothetical protein; PscP77CL_025700.0Showinfo_outline
50708430..708831PHAGE_Pseudo_phi2_NC_030931: hypothetical protein; PscP77CL_02575; phage(gi100010)3.97e-27Showinfo_outline
51709270..709608PHAGE_Pseudo_MD8_NC_031091: DNA helicase; PscP77CL_02580; phage(gi100044)8.66e-08Showinfo_outline
52709608..710198hypothetical protein; PscP77CL_025850.0Showinfo_outline
53710287..710640PHAGE_Vibrio_VvAW1_NC_020488: hypothetical protein; PscP77CL_02590; phage(gi460042912)2.53e-26Showinfo_outline
54710681..711493PHAGE_Xantho_CP2_NC_020205: hypothetical protein; PscP77CL_02595; phage(gi448245210)5.27e-59Showinfo_outline
55complement(711598..711918)hypothetical protein; PscP77CL_026000.0Showinfo_outline
56711917..712101PHAGE_Mycoba_DS6A_NC_023744: gp73; PscP77CL_02605; phage(gi609252460)6.67e-12Showinfo_outline
57complement(712139..712402)DUF1652 domain-containing protein; PscP77CL_026100.0Showinfo_outline
58712411..712422attR0.0Showinfo_outline
59complement(712653..712886)hypothetical protein; PscP77CL_026150.0Showinfo_outline
60complement(713012..713200)hypothetical protein; PscP77CL_026200.0Showinfo_outline
61complement(713420..715048)PHAGE_Salmon_SJ46_NC_031129: head morphogenesis protein; PscP77CL_02625; phage(gi100068)3.98e-08Showinfo_outline
62715333..716190PHAGE_Salmon_BP12C_NC_031228: holin; PscP77CL_02630; phage(gi100034)1.92e-30Showinfo_outline
63716573..717355PHAGE_Pseudo_vB_PaeS_PM105_NC_028667: hypothetical protein; PscP77CL_02635; phage(gi966198684)1.02e-17Showinfo_outline
64717419..717733PHAGE_Pseudo_phiPSA1_NC_024365: hypothetical protein; PscP77CL_02640; phage(gi658307727)3.21e-42Showinfo_outline
65717730..718419PHAGE_Pseudo_phiPSA1_NC_024365: hypothetical protein; PscP77CL_02645; phage(gi658307728)7.12e-43Showinfo_outline
66complement(718422..718634)hypothetical protein; PscP77CL_026500.0Showinfo_outline
67718748..718990PHAGE_Ralsto_RsoM1USA_NC_049432: tail assembly protein; PscP77CL_02655; phage(gi100053)1.11e-05Showinfo_outline
68718992..720041PHAGE_Pseudo_F10_NC_007805: Integrase; PscP77CL_02660; phage(gi148912793)1.18e-126Showinfo_outline

Region 2, total 12 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(821625..823187)PHAGE_Bacill_G_NC_023719: gp344; PscP77CL_03095; phage(gi593777800)2.72e-35Showinfo_outline
2complement(823312..823875)PHAGE_Synech_S_SSM4_NC_020875: hypothetical protein; PscP77CL_03100; phage(gi472343418)2.30e-05Showinfo_outline
3complement(823986..824945)tyrosine-type recombinase/integrase; PscP77CL_031050.0Showinfo_outline
4825123..826133PHAGE_Staphy_SMSAP5_NC_019513: phage tail tape measure protein; PscP77CL_03110; phage(gi422935797)1.14e-05Showinfo_outline
5complement(826144..827418)PAS domain-containing protein; PscP77CL_031150.0Showinfo_outline
6complement(827511..828869)PHAGE_Bacill_G_NC_023719: gp344; PscP77CL_03120; phage(gi593777800)2.73e-10Showinfo_outline
7complement(828972..829811)PHAGE_Bacill_SP_15_NC_031245: hypothetical protein; PscP77CL_03125; phage(gi100148)1.80e-73Showinfo_outline
8830186..830467PHAGE_Entero_ST104_NC_005841: ORF62; PscP77CL_03130; phage(gi46358710)2.59e-10Showinfo_outline
9complement(830523..830876)hypothetical protein; PscP77CL_031350.0Showinfo_outline
10831044..831349DUF1883 domain-containing protein; PscP77CL_031400.0Showinfo_outline
11831364..831546hypothetical protein; PscP77CL_031450.0Showinfo_outline
12831571..832257PHAGE_Phormi_MIS_PhV1A_NC_029032: hypothetical protein; PscP77CL_03150; phage(gi100021)1.19e-13Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 1133713 bps
Phages: 2
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download