Submission Results

Sequence Name: Not Available

GenBank Accession Number: WJYJ01000037.1

GenInfo (GI) Number: 0000000000

Download Results: WJYJ01000037.1.PHASTER.zip

gi|00000000|ref|WJYJ01000037.1| Bacillus sp. RIT694 37, whole genome shotgun sequence. 52896, gc%: 34.82%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
152Kbintact14066735-52739 info_outlinePHAGE_Bacill_phBC6A52_NC_004821(10)34.78%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|WJYJ01000037.1| Bacillus sp. RIT694 37, whole genome shotgun sequence. 52896, gc%: 34.82%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 70 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(735..1700)PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; GJV13_18565; phage(gi100010)2.31e-49Showinfo_outline
21814..2770PHAGE_Acidia_virus_NC_029316: AAA+ ATPase; GJV13_18570; phage(gi1002166819)6.21e-05Showinfo_outline
3complement(3039..3662)trimeric intracellular cation channel family protein; GJV13_185750.0Showinfo_outline
43755..5026GTPase HflX; GJV13_185800.0Showinfo_outline
55019..6290hypothetical protein; GJV13_185850.0Showinfo_outline
66465..6854transcriptional repressor GlnR; GJV13_185900.0Showinfo_outline
76903..8237type I glutamate--ammonia ligase; GJV13_185950.0Showinfo_outline
88319..8342attL0.0Showinfo_outline
9complement(8360..9505)PHAGE_Bacill_phi4B1_NC_028886: site-specific recombinase; GJV13_18600; phage(gi971821285)1.30e-75Showinfo_outline
10complement(9847..10710)hypothetical protein; GJV13_186050.0Showinfo_outline
11complement(10897..11250)PHAGE_Bacill_phBC6A51_NC_004820: Transcriptional regulator, MerR family; GJV13_18610; phage(gi31415741)1.81e-29Showinfo_outline
1211766..12893PHAGE_Bacill_phBC6A52_NC_004821: helix-turn-helix protein; GJV13_18615; phage(gi31415822)1.79e-11Showinfo_outline
1313183..13365hypothetical protein; GJV13_186200.0Showinfo_outline
14complement(13376..13723)PHAGE_Bacill_phBC6A51_NC_004820: Transcriptional regulator; GJV13_18625; phage(gi31415744)1.12e-32Showinfo_outline
1513887..14159PHAGE_Bacill_BM5_NC_029069: hypothetical protein; GJV13_18630; phage(gi985757808)3.09e-09Showinfo_outline
1614122..14853PHAGE_Bacill_PfEFR_5_NC_031055: holin; GJV13_18635; phage(gi100034)2.58e-162Showinfo_outline
1714884..15144PHAGE_Bacill_PfEFR_4_NC_048641: holin; GJV13_18640; phage(gi100034)2.94e-45Showinfo_outline
1815532..16323PHAGE_Bacill_phBC6A52_NC_004821: replication protein; GJV13_18645; phage(gi31415828)5.31e-111Showinfo_outline
1916262..17137PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; GJV13_18650; phage(gi31415829)0.0Showinfo_outline
2017153..17347PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; GJV13_18655; phage(gi31415830)7.47e-31Showinfo_outline
2117373..17546PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; GJV13_18660; phage(gi31415831)8.97e-31Showinfo_outline
2217561..17815PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; GJV13_18665; phage(gi31415832)2.81e-50Showinfo_outline
2317831..18043PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; GJV13_18670; phage(gi31415833)1.12e-34Showinfo_outline
24complement(18116..18646)PHAGE_Plankt_PaV_LD_NC_016564: putative acetyltransferase; GJV13_18675; phage(gi371496157)4.08e-14Showinfo_outline
2518801..19298hypothetical protein; GJV13_186800.0Showinfo_outline
2619301..19690hypothetical protein; GJV13_186850.0Showinfo_outline
2719724..20095PHAGE_Bacill_BceA1_NC_048628: tail fiber protein; GJV13_18690; phage(gi100052)2.40e-35Showinfo_outline
28complement(21124..21339)spore germination protein; GJV13_186950.0Showinfo_outline
2921484..21606PHAGE_Bacill_Gamma_NC_007458: conserved phage protein; GJV13_18700; phage(gi77020188)1.72e-05Showinfo_outline
3021694..21706attL0.0Showinfo_outline
3121920..22402PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; GJV13_18705; phage(gi31415839)1.52e-114Showinfo_outline
3222402..22944PHAGE_Bacill_phBC6A52_NC_004821: DNA integration/recombination/invertion protein; GJV13_18710; phage(gi31415840)5.02e-127Showinfo_outline
3323275..23727PHAGE_Acinet_Acj9_NC_014663: putative ADP-ribose pyrophosphatase protein; GJV13_18715; phage(gi311993489)1.02e-08Showinfo_outline
3424076..24270PHAGE_Bacill_phi4B1_NC_028886: hypothetical protein; GJV13_18720; phage(gi971821270)5.24e-10Showinfo_outline
3524274..24837PHAGE_Bacill_phi4B1_NC_028886: GNAT family acetyltransferase; GJV13_18725; phage(gi971821284)2.46e-66Showinfo_outline
36complement(25513..25767)hypothetical protein; GJV13_187300.0Showinfo_outline
3725850..26062PHAGE_Bacill_phIS3501_NC_019502: phage protein; GJV13_18735; phage(gi422934324)1.09e-38Showinfo_outline
3826198..26422PHAGE_Bacill_phi4B1_NC_028886: hypothetical protein; GJV13_18740; phage(gi971821249)5.84e-08Showinfo_outline
3926429..26677hydrolase; GJV13_187450.0Showinfo_outline
4026664..27038PHAGE_Bacill_BceA1_NC_048628: hypothetical protein; GJV13_18750; phage(gi100002)1.45e-08Showinfo_outline
4127001..27339PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; GJV13_18755; phage(gi100004)6.48e-40Showinfo_outline
4227462..27773PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; GJV13_18760; phage(gi100005)2.58e-23Showinfo_outline
4327770..29437PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; GJV13_18765; phage(gi100006)0.0Showinfo_outline
4429446..30591PHAGE_Lister_LP_101_NC_024387: portal protein; GJV13_18770; phage(gi658607813)1.54e-109Showinfo_outline
4530591..31334PHAGE_Lister_2389_NC_003291: Clp protease; GJV13_18775; phage(gi17488507)7.84e-54Showinfo_outline
4631338..32492PHAGE_Lister_LP_101_NC_024387: major capsid protein; GJV13_18780; phage(gi658607815)1.75e-93Showinfo_outline
4732498..32791PHAGE_Lister_LP_HM00113468_NC_049900: tail tip protein; GJV13_18785; phage(gi100054)2.04e-17Showinfo_outline
4832793..33146PHAGE_Geobac_E2_NC_009552: putative head-tail adaptor; GJV13_18790; phage(gi148747735)2.65e-24Showinfo_outline
4933148..33489PHAGE_Strept_PH10_NC_012756: hypothetical protein; GJV13_18795; phage(gi238821357)1.30e-25Showinfo_outline
5033489..33818PHAGE_Bacill_1_NC_009737: putative aminopeptidase; GJV13_18800; phage(gi155042942)5.06e-29Showinfo_outline
5133819..34415PHAGE_Geobac_GBSV1_NC_008376: major tail protein; GJV13_18805; phage(gi115334636)8.68e-52Showinfo_outline
5234420..34782PHAGE_Geobac_GBSV1_NC_008376: hypothetical protein; GJV13_18810; phage(gi115334637)5.27e-35Showinfo_outline
5335013..36476PHAGE_Lactoc_bIL285_NC_002666: tail protein; GJV13_18815; phage(gi13095732)4.55e-36Showinfo_outline
5436741..38906PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; GJV13_18820; phage(gi31415859)0.0Showinfo_outline
5538948..40432PHAGE_Bacill_vB_BceS_MY192_NC_048633: tail fiber protein; GJV13_18825; phage(gi100052)0.0Showinfo_outline
5640429..44406PHAGE_Bacill_WBeta_NC_007734: putative minor structural protein; GJV13_18830; phage(gi85701394)0.0Showinfo_outline
5744540..44764PHAGE_Bacill_phIS3501_NC_019502: phage protein; GJV13_18835; phage(gi422934341)9.52e-41Showinfo_outline
5844810..44822attR0.0Showinfo_outline
5944837..45073PHAGE_Bacill_BMBtpLA_NC_028748: XpaF1 protein; GJV13_18840; phage(gi971482496)7.22e-41Showinfo_outline
6045073..45312PHAGE_Bacill_phBC6A51_NC_004820: holin; GJV13_18845; phage(gi31415802)1.01e-38Showinfo_outline
6145309..46373PHAGE_Bacill_phBC6A51_NC_004820: N-acetylmuramoyl-L-alanine amidase; GJV13_18850; phage(gi31415803)0.0Showinfo_outline
62complement(46456..47208)hypothetical protein; GJV13_188550.0Showinfo_outline
6347584..47607attR0.0Showinfo_outline
6447914..48600PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; GJV13_18860; phage(gi31415800)3.83e-58Showinfo_outline
6549021..50358PHAGE_Bacill_phi4J1_NC_029008: tail fiber; GJV13_18865; phage(gi971821625)1.48e-64Showinfo_outline
6650376..50651PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; GJV13_18870; phage(gi100072)1.03e-43Showinfo_outline
6750762..51133hypothetical protein; GJV13_188750.0Showinfo_outline
6851212..51448PHAGE_Bacill_phBC6A51_NC_004820: XpaF1 protein; GJV13_18880; phage(gi31415801)1.01e-42Showinfo_outline
6951448..51687PHAGE_Bacill_phBC6A51_NC_004820: holin; GJV13_18885; phage(gi31415802)2.44e-38Showinfo_outline
7051684..52739PHAGE_Bacill_phBC6A51_NC_004820: N-acetylmuramoyl-L-alanine amidase; GJV13_18890; phage(gi31415803)3.46e-172Showinfo_outline
Bacillus sp. RIT694 37, whole genome shotgun sequence
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

Viewer Options
Length: 52896 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download