Submission Results

Sequence Name: Not Available

GenBank Accession Number: WJYJ01000078.1

GenInfo (GI) Number: 0000000000

Download Results: WJYJ01000078.1.PHASTER.zip

gi|00000000|ref|WJYJ01000078.1| Bacillus sp. RIT694 78, whole genome shotgun sequence. 20751, gc%: 35.26%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
119.3Kbincomplete30311400-20751 info_outlinePHAGE_Bacill_phBC6A52_NC_004821(6)35.42%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|WJYJ01000078.1| Bacillus sp. RIT694 78, whole genome shotgun sequence. 20751, gc%: 35.26%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 33 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(1400..1768)PHAGE_Bacill_phi105_NC_004167: hypothetical protein; GJV13_25550; phage(gi22855040)5.68e-21Showinfo_outline
21521..1532attL0.0Showinfo_outline
3complement(1813..2046)hypothetical protein; GJV13_255550.0Showinfo_outline
4complement(2097..2342)PHAGE_Bacill_vB_BtS_B83_NC_048762: hypothetical protein; GJV13_25560; phage(gi100060)1.77e-43Showinfo_outline
5complement(3272..3460)hypothetical protein; GJV13_255650.0Showinfo_outline
6complement(3501..4211)PHAGE_Bacill_WBeta_NC_007734: putative RNA polymerase sigma subunit; GJV13_25570; phage(gi85701416)1.76e-67Showinfo_outline
7complement(4222..4623)hypothetical protein; GJV13_255750.0Showinfo_outline
8complement(4633..5580)PHAGE_Bacill_BceA1_NC_048628: tail tip protein; GJV13_25580; phage(gi100054)4.39e-06Showinfo_outline
9complement(5599..6330)PHAGE_Lister_B054_NC_009813: gp58; GJV13_25585; phage(gi157325342)3.73e-10Showinfo_outline
10complement(6345..6761)PHAGE_Anoxyb_A403_NC_048701: endolysin; GJV13_25590; phage(gi100033)1.02e-41Showinfo_outline
11complement(6758..7273)PHAGE_Aeriba_AP45_NC_048651: hypothetical protein; GJV13_25595; phage(gi100019)3.17e-31Showinfo_outline
12complement(7366..7566)PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; GJV13_25600; phage(gi31415779)1.85e-23Showinfo_outline
13complement(7563..7877)PHAGE_Bacill_BMBtpLA_NC_028748: hypothetical protein; GJV13_25605; phage(gi971482528)1.34e-29Showinfo_outline
14complement(8059..8319)PHAGE_Bacill_Blue_NC_031056: hypothetical protein; GJV13_25610; phage(gi100009)1.27e-25Showinfo_outline
15complement(8304..8525)PHAGE_Bacter_Lily_NC_028841: hypothetical protein; GJV13_25615; phage(gi971748311)5.33e-12Showinfo_outline
16complement(8758..9264)PHAGE_Bacill_G_NC_023719: gp577; GJV13_25620; phage(gi593778019)1.59e-21Showinfo_outline
17complement(9245..9433)PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; GJV13_25625; phage(gi31415830)1.35e-14Showinfo_outline
18complement(9439..10131)PHAGE_Thermu_OH2_NC_021784: IstB domain-containing protein ATP-binding protein; GJV13_25630; phage(gi526118348)1.96e-78Showinfo_outline
19complement(10202..11032)PHAGE_Bacill_phBC6A52_NC_004821: replication protein; GJV13_25635; phage(gi31415828)8.91e-63Showinfo_outline
20complement(11203..12027)PHAGE_Thermu_OH2_NC_021784: RecT protein; GJV13_25640; phage(gi526118350)1.16e-131Showinfo_outline
21complement(12043..12978)PHAGE_Thermu_OH2_NC_021784: phage-type endonuclease; GJV13_25645; phage(gi526118352)1.61e-128Showinfo_outline
22complement(13056..13271)hypothetical protein; GJV13_256500.0Showinfo_outline
23complement(13370..13690)PHAGE_Bacill_BtCS33_NC_018085: hypothetical protein; GJV13_25655; phage(gi392972744)4.07e-40Showinfo_outline
24complement(13835..14110)PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; GJV13_25660; phage(gi31415825)3.67e-43Showinfo_outline
25complement(14188..14388)PHAGE_Staphy_11_NC_004615: cI-like repressor; GJV13_25665; phage(gi29028568)8.15e-09Showinfo_outline
2614632..15000PHAGE_Bacill_250_NC_029024: helix-turn-helix domain protein; GJV13_25670; phage(gi971766654)6.05e-14Showinfo_outline
27complement(15274..15459)hypothetical protein; GJV13_256750.0Showinfo_outline
28complement(15460..16596)PHAGE_Bacill_phBC6A52_NC_004821: helix-turn-helix protein; GJV13_25680; phage(gi31415822)1.11e-22Showinfo_outline
2917054..17398PHAGE_Bacill_phBC6A51_NC_004820: Transcriptional regulator, MerR family; GJV13_25685; phage(gi31415741)1.74e-48Showinfo_outline
30complement(17857..18351)hypothetical protein; GJV13_256900.0Showinfo_outline
3119140..20249PHAGE_Bacill_phBC6A52_NC_004821: DNA integration/recombination/invertion protein; GJV13_25695; phage(gi31415821)0.0Showinfo_outline
32complement(20288..20751)PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; GJV13_25700; phage(gi31415820)6.76e-95Showinfo_outline
3320591..20602attR0.0Showinfo_outline
Bacillus sp. RIT694 78, whole genome shotgun sequence
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 20751 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download