Submission Results

Sequence Name: Not Available

GenBank Accession Number: WKQF01000002.1

GenInfo (GI) Number: 0000000000

Download Results: WKQF01000002.1.PHASTER.zip

gi|00000000|ref|WKQF01000002.1| Faecalibacterium prausnitzii strain BIOML-B8 scaffold2_size417577, 417577, gc%: 52.17%

Download summary as .txt file: summary.txt file_download

Total: 3 prophage regions have been identified, of which 1 regions are intact, 2 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
151.1Kbintact1307594046-145206 info_outlinePHAGE_Faecal_FP_Epona_NC_047910(65)57.49%Show info_outline
228.8Kbincomplete2019170097-198918 info_outlinePHAGE_Escher_phAPEC8_NC_020079(4)41.77%Show info_outline
310Kbincomplete607241844-251898 info_outlinePHAGE_Clostr_PhiS63_NC_017978(1)44.65%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|WKQF01000002.1| Faecalibacterium prausnitzii strain BIOML-B8 scaffold2_size417577, 417577, gc%: 52.17%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 76 CDS

#CDS PositionBLAST HitE-ValueSequence
194046..95908PHAGE_Nodula_vB_NspS_kac65v151_NC_048756: hypothetical protein; GKE00_02615; phage(gi100075)6.10e-56Showinfo_outline
295939..96277YbaB/EbfC family nucleoid-associated protein; GKE00_026200.0Showinfo_outline
396297..96896recombination protein RecR; GKE00_026250.0Showinfo_outline
496998..97480PHAGE_Escher_500465_1_NC_049342: HNH endonuclease; GKE00_02630; phage(gi100046)5.26e-34Showinfo_outline
597551..97901tRNA0.0Showinfo_outline
698139..98357PHAGE_Faecal_FP_Epona_NC_047910: hypothetical protein; GKE00_02640; phage(gi100073)4.57e-46Showinfo_outline
798372..98548hypothetical protein; GKE00_026450.0Showinfo_outline
898562..98876hypothetical protein; GKE00_026500.0Showinfo_outline
998830..99138PHAGE_Faecal_FP_Epona_NC_047910: terminase small subunit; GKE00_02655; phage(gi100071)9.05e-67Showinfo_outline
1099142..99513PHAGE_Faecal_FP_Taranis_NC_047914: hypothetical protein; GKE00_02660; phage(gi100077)2.94e-15Showinfo_outline
1199517..99762PHAGE_Faecal_FP_Epona_NC_047910: capsid maturation protease; GKE00_02665; phage(gi100067)3.48e-38Showinfo_outline
12complement(99882..100598)PHAGE_Faecal_FP_Epona_NC_047910: capsid decoration protein; GKE00_02670; phage(gi100066)1.89e-175Showinfo_outline
13complement(100606..101310)PHAGE_Faecal_FP_Epona_NC_047910: hypothetical protein; GKE00_02675; phage(gi100065)6.30e-170Showinfo_outline
14complement(101371..101697)PHAGE_Faecal_FP_Epona_NC_047910: hypothetical protein; GKE00_02680; phage(gi100064)1.21e-68Showinfo_outline
15complement(101711..101992)PHAGE_Faecal_FP_Epona_NC_047910: hypothetical protein; GKE00_02685; phage(gi100063)4.94e-50Showinfo_outline
16complement(101982..102191)PHAGE_Faecal_FP_Epona_NC_047910: hypothetical protein; GKE00_02690; phage(gi100062)8.63e-43Showinfo_outline
17complement(102184..102333)PHAGE_Faecal_FP_Epona_NC_047910: hypothetical protein; GKE00_02695; phage(gi100061)1.05e-26Showinfo_outline
18complement(102336..102599)PHAGE_Faecal_FP_Epona_NC_047910: hypothetical protein; GKE00_02700; phage(gi100060)8.49e-58Showinfo_outline
19complement(102559..103713)PHAGE_Faecal_FP_Epona_NC_047910: hypothetical protein; GKE00_02705; phage(gi100059)0.0Showinfo_outline
20complement(104158..105405)PHAGE_Faecal_FP_Epona_NC_047910: hypothetical protein; GKE00_02710; phage(gi100058)0.0Showinfo_outline
21complement(105405..105956)PHAGE_Faecal_FP_Epona_NC_047910: tail length tape-measure protein; GKE00_02715; phage(gi100057)5.17e-132Showinfo_outline
22complement(105971..106966)PHAGE_Faecal_FP_Epona_NC_047910: minor tail protein; GKE00_02720; phage(gi100056)0.0Showinfo_outline
23complement(106959..108113)PHAGE_Faecal_FP_Epona_NC_047910: minor tail protein; GKE00_02725; phage(gi100055)0.0Showinfo_outline
24complement(108106..108417)PHAGE_Faecal_FP_Epona_NC_047910: tail tip protein; GKE00_02730; phage(gi100054)1.61e-70Showinfo_outline
25complement(108431..108826)PHAGE_Faecal_FP_Epona_NC_047910: tail assembly protein; GKE00_02735; phage(gi100053)5.07e-94Showinfo_outline
26complement(108845..109501)PHAGE_Faecal_FP_Epona_NC_047910: tail fiber protein; GKE00_02740; phage(gi100052)1.96e-155Showinfo_outline
27complement(109516..110814)PHAGE_Faecal_FP_Epona_NC_047910: hypothetical protein; GKE00_02745; phage(gi100051)0.0Showinfo_outline
28complement(110818..111036)PHAGE_Faecal_FP_Epona_NC_047910: putative single-stranded DNA binding protein; GKE00_02750; phage(gi100050)2.19e-45Showinfo_outline
29complement(111051..114341)PHAGE_Faecal_FP_Epona_NC_047910: recombination protein; GKE00_02755; phage(gi100049)0.0Showinfo_outline
30complement(114477..114809)PHAGE_Faecal_FP_Epona_NC_047910: exonuclease; GKE00_02760; phage(gi100048)9.16e-76Showinfo_outline
31complement(114809..115333)PHAGE_Faecal_FP_Epona_NC_047910: primase; GKE00_02765; phage(gi100047)7.69e-124Showinfo_outline
32complement(115333..116805)PHAGE_Faecal_FP_Epona_NC_047910: HNH endonuclease; GKE00_02770; phage(gi100046)0.0Showinfo_outline
33complement(116828..117082)PHAGE_Faecal_FP_Epona_NC_047910: putative transcriptional regulator; GKE00_02775; phage(gi100045)3.69e-54Showinfo_outline
34complement(117079..117552)PHAGE_Faecal_FP_Epona_NC_047910: DNA helicase; GKE00_02780; phage(gi100044)3.43e-115Showinfo_outline
35complement(117549..118127)PHAGE_Faecal_FP_Epona_NC_047910: hypothetical protein; GKE00_02785; phage(gi100043)4.66e-137Showinfo_outline
36complement(118148..118486)PHAGE_Faecal_FP_Epona_NC_047910: hypothetical protein; GKE00_02790; phage(gi100042)1.64e-78Showinfo_outline
37complement(118474..118764)PHAGE_Faecal_FP_Epona_NC_047910: DNA adenine methyltransferase; GKE00_02795; phage(gi100041)7.73e-64Showinfo_outline
38complement(118757..119086)PHAGE_Faecal_FP_Epona_NC_047910: hypothetical protein; GKE00_02800; phage(gi100040)1.93e-72Showinfo_outline
39complement(119107..120699)PHAGE_Faecal_FP_Epona_NC_047910: hypothetical protein; GKE00_02805; phage(gi100039)0.0Showinfo_outline
40complement(120713..121243)PHAGE_Faecal_FP_Epona_NC_047910: hypothetical protein; GKE00_02810; phage(gi100038)3.00e-126Showinfo_outline
41complement(121284..122822)PHAGE_Faecal_FP_Epona_NC_047910: putative phosphoesterase; GKE00_02815; phage(gi100037)0.0Showinfo_outline
42complement(122828..123067)PHAGE_Faecal_FP_Epona_NC_047910: hypothetical protein; GKE00_02820; phage(gi100036)9.37e-50Showinfo_outline
43complement(123236..123502)PHAGE_Faecal_FP_Epona_NC_047910: hypothetical protein; GKE00_02825; phage(gi100035)6.44e-59Showinfo_outline
44complement(123516..125369)PHAGE_Faecal_FP_Epona_NC_047910: holin; GKE00_02830; phage(gi100034)0.0Showinfo_outline
45complement(125338..125874)PHAGE_Faecal_FP_Epona_NC_047910: endolysin; GKE00_02835; phage(gi100033)1.70e-127Showinfo_outline
46complement(125965..127291)PHAGE_Faecal_FP_Epona_NC_047910: u-spanin; GKE00_02840; phage(gi100032)0.0Showinfo_outline
47complement(128026..128502)PHAGE_Faecal_FP_Epona_NC_047910: hypothetical protein; GKE00_02845; phage(gi100031)2.61e-114Showinfo_outline
48complement(128468..128779)hypothetical protein; GKE00_028500.0Showinfo_outline
49complement(128776..129051)PHAGE_Faecal_FP_Epona_NC_047910: hypothetical protein; GKE00_02855; phage(gi100030)1.46e-60Showinfo_outline
50complement(129032..129469)PHAGE_Faecal_FP_Epona_NC_047910: hypothetical protein; GKE00_02860; phage(gi100029)4.33e-102Showinfo_outline
51complement(129466..129714)PHAGE_Faecal_FP_Epona_NC_047910: hypothetical protein; GKE00_02865; phage(gi100028)5.54e-54Showinfo_outline
52complement(129708..130466)PHAGE_Faecal_FP_Epona_NC_047910: hypothetical protein; GKE00_02870; phage(gi100027)0.0Showinfo_outline
53complement(130448..131053)PHAGE_Faecal_FP_Epona_NC_047910: hypothetical protein; GKE00_02875; phage(gi100026)2.28e-150Showinfo_outline
54complement(131059..131319)PHAGE_Faecal_FP_Epona_NC_047910: hypothetical protein; GKE00_02880; phage(gi100025)1.77e-53Showinfo_outline
55complement(131420..131752)PHAGE_Faecal_FP_Epona_NC_047910: hypothetical protein; GKE00_02885; phage(gi100025)1.16e-57Showinfo_outline
56complement(131754..132011)PHAGE_Faecal_FP_Epona_NC_047910: hypothetical protein; GKE00_02890; phage(gi100024)9.91e-58Showinfo_outline
57complement(132339..135095)PHAGE_Faecal_FP_Epona_NC_047910: hypothetical protein; GKE00_02895; phage(gi100022)0.0Showinfo_outline
58complement(135215..136084)PHAGE_Faecal_FP_Epona_NC_047910: hypothetical protein; GKE00_02900; phage(gi100021)0.0Showinfo_outline
59complement(136102..136569)PHAGE_Faecal_FP_Epona_NC_047910: hypothetical protein; GKE00_02905; phage(gi100020)4.52e-105Showinfo_outline
60complement(136569..137012)PHAGE_Faecal_FP_Epona_NC_047910: hypothetical protein; GKE00_02910; phage(gi100019)1.03e-100Showinfo_outline
61complement(137009..137152)PHAGE_Faecal_FP_Epona_NC_047910: hypothetical protein; GKE00_02915; phage(gi100018)1.25e-26Showinfo_outline
62complement(137233..137547)PHAGE_Faecal_FP_Epona_NC_047910: hypothetical protein; GKE00_02920; phage(gi100017)1.12e-72Showinfo_outline
63complement(137540..137764)PHAGE_Faecal_FP_Epona_NC_047910: hypothetical protein; GKE00_02925; phage(gi100016)1.72e-46Showinfo_outline
64complement(137761..139113)PHAGE_Faecal_FP_Epona_NC_047910: hypothetical protein; GKE00_02930; phage(gi100015)0.0Showinfo_outline
65complement(139156..140073)PHAGE_Clostr_phiCT453B_NC_029004: hypothetical protein; GKE00_02935; phage(gi100019)4.78e-102Showinfo_outline
66complement(140070..140351)PHAGE_Faecal_FP_Epona_NC_047910: hypothetical protein; GKE00_02940; phage(gi100012)6.62e-60Showinfo_outline
67complement(140348..140743)PHAGE_Faecal_FP_Epona_NC_047910: hypothetical protein; GKE00_02945; phage(gi100011)3.30e-90Showinfo_outline
68complement(140740..141105)PHAGE_Faecal_FP_Epona_NC_047910: hypothetical protein; GKE00_02950; phage(gi100010)1.05e-82Showinfo_outline
69complement(141102..141320)PHAGE_Faecal_FP_Epona_NC_047910: hypothetical protein; GKE00_02955; phage(gi100008)1.14e-45Showinfo_outline
70complement(141313..141603)PHAGE_Faecal_FP_Epona_NC_047910: hypothetical protein; GKE00_02960; phage(gi100007)2.68e-64Showinfo_outline
71complement(141606..141935)PHAGE_Faecal_FP_Epona_NC_047910: hypothetical protein; GKE00_02965; phage(gi100006)1.81e-74Showinfo_outline
72complement(141952..142152)PHAGE_Faecal_FP_Epona_NC_047910: hypothetical protein; GKE00_02970; phage(gi100005)3.90e-42Showinfo_outline
73complement(142170..142337)PHAGE_Faecal_FP_Epona_NC_047910: hypothetical protein; GKE00_02975; phage(gi100004)5.79e-32Showinfo_outline
74142474..142956PHAGE_Faecal_FP_Epona_NC_047910: hypothetical protein; GKE00_02980; phage(gi100003)8.28e-78Showinfo_outline
75143088..143615PHAGE_Faecal_FP_Epona_NC_047910: hypothetical protein; GKE00_02985; phage(gi100002)1.66e-121Showinfo_outline
76143653..145206PHAGE_Faecal_FP_Epona_NC_047910: methyltransferase type 11; GKE00_02990; phage(gi100001)0.0Showinfo_outline

Region 2, total 21 CDS

#CDS PositionBLAST HitE-ValueSequence
1170097..170109attL0.0Showinfo_outline
2173706..174773PHAGE_Thermu_P7426_NC_009804: phage XerD-like integrase; GKE00_03120; phage(gi157265417)3.08e-26Showinfo_outline
3174848..176656DEAD/DEAH box helicase; GKE00_031250.0Showinfo_outline
4complement(177628..177810)hypothetical protein; GKE00_031300.0Showinfo_outline
5complement(177859..178257)hypothetical protein; GKE00_031350.0Showinfo_outline
6complement(178457..178657)PHAGE_Lactob_jlb1_NC_024206: putative XRE family transcriptional regulator; GKE00_03140; phage(gi971848892)9.82e-09Showinfo_outline
7complement(178727..179011)hypothetical protein; GKE00_031450.0Showinfo_outline
8complement(179081..179743)PHAGE_Pseudo_PaBG_NC_022096: hypothetical protein; GKE00_03150; phage(gi530787804)5.42e-06Showinfo_outline
9complement(179876..180151)hypothetical protein; GKE00_031550.0Showinfo_outline
10180347..180757hypothetical protein; GKE00_031600.0Showinfo_outline
11181847..182350sugar transferase; GKE00_031650.0Showinfo_outline
12182952..184403exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; GKE00_031700.0Showinfo_outline
13184504..185400PHAGE_Entero_phi92_NC_023693: Phi92_gp066; GKE00_03175; phage(gi726646999)5.11e-133Showinfo_outline
14185420..186439PHAGE_Entero_phi92_NC_023693: Phi92_gp067; GKE00_03180; phage(gi726647000)4.90e-103Showinfo_outline
15186461..187375PHAGE_Entero_phi92_NC_023693: Phi92_gp064; GKE00_03185; phage(gi726646997)1.19e-37Showinfo_outline
16187408..188010PHAGE_Entero_phi92_NC_023693: Phi92_gp065; GKE00_03190; phage(gi726646998)1.15e-60Showinfo_outline
17188057..188506UDP-N-acetylglucosamine--LPS N-acetylglucosamine transferase; GKE00_031950.0Showinfo_outline
18188519..188782hypothetical protein; GKE00_032000.0Showinfo_outline
19189463..190656PHAGE_Sulfol_8_NC_034623: hypothetical protein; GKE00_03205; phage(gi100028)1.99e-05Showinfo_outline
20190589..191215PHAGE_Entero_phi92_NC_023693: Phi92_gp066; GKE00_03210; phage(gi726646999)1.65e-97Showinfo_outline
21198918..198930attR0.0Showinfo_outline

Region 3, total 7 CDS

#CDS PositionBLAST HitE-ValueSequence
1241844..243493PHAGE_Anoxyb_A403_NC_048701: tail length tape-measure protein; GKE00_03430; phage(gi100057)3.47e-27Showinfo_outline
2243490..245019PHAGE_Anoxyb_A403_NC_048701: tail length tape-measure protein; GKE00_03435; phage(gi100057)9.44e-11Showinfo_outline
3245003..246694PHAGE_Bacill_phBC6A51_NC_004820: Site-specific recombinase; GKE00_03440; phage(gi31415812)8.01e-20Showinfo_outline
4246687..248282PHAGE_Clostr_PhiS63_NC_017978: gp24; GKE00_03445; phage(gi388570653)5.78e-21Showinfo_outline
5complement(248480..248821)PHAGE_Clostr_phiCD211_NC_029048: DNA-binding helix-turn-helix protein; GKE00_03450; phage(gi981220892)7.97e-09Showinfo_outline
6249072..250049PHAGE_Mycoba_Rando14_NC_051596: capsid decoration protein; GKE00_03455; phage(gi100066)4.29e-10Showinfo_outline
7249943..251898PHAGE_Bacill_Gamma_NC_007458: site-specific recombinase; GKE00_03460; phage(gi77020163)1.23e-28Showinfo_outline
Faecalibacterium prausnitzii strain BIOML-B8 scaffold2_size417577
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 417577 bps
Phages: 3
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download