Submission Results

Sequence Name: Not Available

GenBank Accession Number: WKQL01000016.1

GenInfo (GI) Number: 0000000000

Download Results: WKQL01000016.1.PHASTER.zip

gi|00000000|ref|WKQL01000016.1| Faecalibacterium prausnitzii strain BIOML-B2 scaffold16_size79481, 79481, gc%: 55.66%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
118.6Kbincomplete302733619-52243 info_outlinePHAGE_Brevib_Jimmer1_NC_029104(3)57.97%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|WKQL01000016.1| Faecalibacterium prausnitzii strain BIOML-B2 scaffold16_size79481, 79481, gc%: 55.66%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 27 CDS

#CDS PositionBLAST HitE-ValueSequence
133619..34149PHAGE_Bacill_BMBtpLA_NC_028748: hypothetical protein; GKE04_09430; phage(gi971482531)3.35e-16Showinfo_outline
234361..34621hypothetical protein; GKE04_094350.0Showinfo_outline
334718..35401PHAGE_Clostr_phiCTC2B_NC_030951: hypothetical protein; GKE04_09440; phage(gi100016)7.31e-07Showinfo_outline
435385..35630hypothetical protein; GKE04_094450.0Showinfo_outline
535642..3581850S ribosomal protein L36; GKE04_094500.0Showinfo_outline
635815..36108hypothetical protein; GKE04_094550.0Showinfo_outline
736105..37010PHAGE_Brevib_Jimmer2_NC_041976: hypothetical protein; GKE04_09460; phage(gi100084)1.85e-05Showinfo_outline
837003..37644PHAGE_Bacill_BCJA1c_NC_006557: hypothetical protein; GKE04_09465; phage(gi56694895)5.35e-15Showinfo_outline
937855..38442PHAGE_Entero_phiEf11_NC_013696: ParB-like nuclease domain protein; GKE04_09470; phage(gi282598764)2.38e-34Showinfo_outline
1038442..39011PHAGE_Entero_phiEf11_NC_013696: ParB-like nuclease domain protein; GKE04_09475; phage(gi282598764)1.17e-31Showinfo_outline
1139011..40030radical SAM protein; GKE04_094800.0Showinfo_outline
1240014..40868PHAGE_Salmon_Maynard_NC_022768: pyridoxal-phosphate dependent enzyme; GKE04_09485; phage(gi609216878)2.67e-22Showinfo_outline
1340888..41406hypothetical protein; GKE04_094900.0Showinfo_outline
1441403..42800PHAGE_Entero_phiEf11_NC_013696: putative phage terminase B protein; GKE04_09495; phage(gi282598712)8.01e-128Showinfo_outline
1542878..44500PHAGE_Lactoc_28201_NC_031013: hypothetical protein; GKE04_09500; phage(gi100031)1.96e-92Showinfo_outline
1644497..45477PHAGE_Lactoc_28201_NC_031013: hypothetical protein; GKE04_09505; phage(gi100032)3.75e-15Showinfo_outline
1745474..45710hypothetical protein; GKE04_095100.0Showinfo_outline
1845694..46005hypothetical protein; GKE04_095150.0Showinfo_outline
1946032..47354PHAGE_Lactoc_98201_NC_031064: membrane-associated initiation of head vertex; GKE04_09520; phage(gi100034)1.50e-32Showinfo_outline
2047370..48446PHAGE_Strept_Mildred21_NC_042008: rnaseH; GKE04_09525; phage(gi100048)1.61e-29Showinfo_outline
2148463..48915hypothetical protein; GKE04_095300.0Showinfo_outline
2248915..49310DUF3199 family protein; GKE04_095350.0Showinfo_outline
2349315..49680DUF3599 family protein; GKE04_095400.0Showinfo_outline
2449680..50213PHAGE_Brevib_Jimmer2_NC_041976: hypothetical protein; GKE04_09545; phage(gi100012)2.92e-10Showinfo_outline
2550224..50694hypothetical protein; GKE04_095500.0Showinfo_outline
2650706..50903hypothetical protein; GKE04_095550.0Showinfo_outline
2750903..52243PHAGE_Clostr_phiCT453A_NC_028991: clamp-loader subunit; GKE04_09560; phage(gi100041)2.36e-72Showinfo_outline
Faecalibacterium prausnitzii strain BIOML-B2 scaffold16_size79481
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 79481 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download