Submission Results

Sequence Name: Not Available

GenBank Accession Number: WUCY01000039.1

GenInfo (GI) Number: 0000000000

Download Results: WUCY01000039.1.PHASTER.zip

gi|00000000|ref|WUCY01000039.1| Bacillus anthracis strain delta ANR S3-7 NODE_82, whole genome 2209246, gc%: 35.27%

Download summary as .txt file: summary.txt file_download

Total: 4 prophage regions have been identified, of which 0 regions are intact, 3 regions are incomplete, and 1 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
131.4Kbincomplete4034780586-812025 info_outlinePHAGE_Bacill_vB_BceS_MY192_NC_048633(19)35.41%Show info_outline
221.6Kbincomplete20111854459-1876144 info_outlinePHAGE_Bacill_vB_BceS_MY192_NC_048633(4)34.61%Show info_outline
331.9Kbquestionable80361970437-2002418 info_outlinePHAGE_Bacill_1_NC_009737(7)34.60%Show info_outline
437.9Kbincomplete30242150319-2188260 info_outlinePHAGE_Bacill_PfEFR_5_NC_031055(11)34.67%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|WUCY01000039.1| Bacillus anthracis strain delta ANR S3-7 NODE_82, whole genome 2209246, gc%: 35.27%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 36 CDS

#CDS PositionBLAST HitE-ValueSequence
1780586..780598attL0.0Showinfo_outline
2780861..781076PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GRA97_21975; phage(gi100064)8.31e-13Showinfo_outline
3781069..781431PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GRA97_21980; phage(gi100004)7.07e-72Showinfo_outline
4781593..781973PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GRA97_21985; phage(gi100005)9.57e-90Showinfo_outline
5781954..783726PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GRA97_21990; phage(gi100006)0.0Showinfo_outline
6783742..784956PHAGE_Bacill_vB_BceS_MY192_NC_048633: DNA adenine methyltransferase; GRA97_21995; phage(gi100041)0.0Showinfo_outline
7784934..785689PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; GRA97_22000; phage(gi100042)4.60e-178Showinfo_outline
8785686..786873PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GRA97_22005; phage(gi100009)0.0Showinfo_outline
9786851..787150fibronectin type III domain-containing protein; GRA97_220100.0Showinfo_outline
10787159..787434PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GRA97_22015; phage(gi100010)4.62e-57Showinfo_outline
11787421..787768PHAGE_Bacill_vB_BceS_MY192_NC_048633: putative transcriptional regulator; GRA97_22020; phage(gi100045)6.08e-81Showinfo_outline
12787756..788193PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GRA97_22025; phage(gi100012)8.07e-102Showinfo_outline
13788190..788549PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GRA97_22030; phage(gi100013)1.39e-83Showinfo_outline
14788563..789147PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GRA97_22035; phage(gi100014)6.71e-141Showinfo_outline
15789207..789617PHAGE_Bacill_vB_BceS_MY192_NC_048633: recombination protein; GRA97_22040; phage(gi100049)5.20e-65Showinfo_outline
16789619..789759PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GRA97_22045; phage(gi100016)9.73e-25Showinfo_outline
17789775..794788PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GRA97_22050; phage(gi100017)0.0Showinfo_outline
18794825..796306PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GRA97_22055; phage(gi100018)0.0Showinfo_outline
19796303..798285PHAGE_Bacill_vB_BceS_MY192_NC_048633: tail assembly protein; GRA97_22060; phage(gi100053)0.0Showinfo_outline
20798282..800387PHAGE_Bacill_phi4J1_NC_029008: tail fiber; GRA97_22065; phage(gi971821625)1.01e-49Showinfo_outline
21800412..800687PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; GRA97_22070; phage(gi100072)8.53e-43Showinfo_outline
22800843..801811PHAGE_Bacill_BceA1_NC_048628: hypothetical protein; GRA97_22075; phage(gi100020)0.0Showinfo_outline
23801816..802241PHAGE_Bacill_WBeta_NC_007734: phage holin; GRA97_22080; phage(gi85701395)2.05e-94Showinfo_outline
24802241..802945PHAGE_Paenib_Kawika_NC_048715: hypothetical protein; GRA97_22085; phage(gi100022)2.77e-82Showinfo_outline
25complement(803009..803590)PHAGE_Bacill_phIS3501_NC_019502: phage protein; GRA97_22090; phage(gi422934344)4.71e-132Showinfo_outline
26complement(803596..803778)PHAGE_Bacill_Gamma_NC_007458: hypothetical protein; GRA97_22095; phage(gi77020185)3.32e-06Showinfo_outline
27complement(803782..803988)PHAGE_Bacill_WBeta_NC_007734: conserved phage protein; GRA97_22100; phage(gi85701398)2.52e-24Showinfo_outline
28804172..804474PHAGE_Bacill_WBeta_NC_007734: conserved phage protein; GRA97_22105; phage(gi85701399)1.16e-65Showinfo_outline
29804477..804659PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; GRA97_22110; phage(gi31415810)5.53e-29Showinfo_outline
30804775..805956PHAGE_Bacill_phIS3501_NC_019502: FtsK/SpoIIIE family phage protein; GRA97_22115; phage(gi422934346)0.0Showinfo_outline
31805898..806521PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; GRA97_22120; phage(gi31415811)3.34e-131Showinfo_outline
32complement(806554..807150)PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; GRA97_22125; phage(gi100065)2.92e-109Showinfo_outline
33807567..808067DUF177 domain-containing protein; GRA97_221300.0Showinfo_outline
34808129..80830250S ribosomal protein L32; GRA97_221350.0Showinfo_outline
35808431..808937PHAGE_Bacill_Stills_NC_028777: hypothetical protein; GRA97_22140; phage(gi100026)3.19e-05Showinfo_outline
36812025..812037attR0.0Showinfo_outline

Region 2, total 13 CDS

#CDS PositionBLAST HitE-ValueSequence
11854459..1854470attL0.0Showinfo_outline
2complement(1868871..1869995)PROPHAGE_Mesorh_MAFF303099: bacteriophage integrase; GRA97_27670; phage(gi13470699)3.71e-66Showinfo_outline
3complement(1870711..1871055)PHAGE_Bacill_phBC6A51_NC_004820: Transcriptional regulator, MerR family; GRA97_27675; phage(gi31415741)8.47e-28Showinfo_outline
41871590..1872765PHAGE_Bacill_Waukesha92_NC_025424: hypothetical protein; GRA97_27680; phage(gi712912391)1.47e-57Showinfo_outline
51872783..1872929PHAGE_Bacill_BMBtpLA_NC_028748: hypothetical protein; GRA97_27685; phage(gi971482515)6.64e-06Showinfo_outline
6complement(1873259..1873600)PHAGE_Lister_A500_NC_009810: gp33; GRA97_27690; phage(gi157324992)1.85e-16Showinfo_outline
71873775..1873996PHAGE_Vibrio_CTX_NC_015209: RstR; GRA97_27695; phage(gi332672299)5.87e-06Showinfo_outline
81874014..1874745PHAGE_Bacill_PfEFR_5_NC_031055: holin; GRA97_27700; phage(gi100034)6.34e-168Showinfo_outline
91874760..1874771attR0.0Showinfo_outline
101874790..1875140PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; GRA97_27705; phage(gi100039)2.73e-06Showinfo_outline
111875137..1875304PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; GRA97_27710; phage(gi100008)2.05e-30Showinfo_outline
121875334..1875519PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GRA97_27715; phage(gi100036)5.13e-26Showinfo_outline
131875516..1876144PHAGE_Bacill_BceA1_NC_048628: DNA adenine methyltransferase; GRA97_27720; phage(gi100041)2.39e-71Showinfo_outline

Region 3, total 36 CDS

#CDS PositionBLAST HitE-ValueSequence
11970437..1970769PHAGE_Vibrio_PWH3a_P1_NC_020863: hypothetical protein; GRA97_28175; phage(gi472342476)3.07e-05Showinfo_outline
21970802..1971785HNH endonuclease; GRA97_281800.0Showinfo_outline
31971900..1972676hypothetical protein; GRA97_281850.0Showinfo_outline
41973245..1973523PHAGE_Bacill_Deep_Purple_NC_048667: hypothetical protein; GRA97_28190; phage(gi100017)2.46e-10Showinfo_outline
51973644..1974069hypothetical protein; GRA97_281950.0Showinfo_outline
6complement(1974156..1974578)PHAGE_Aeriba_AP45_NC_048651: hypothetical protein; GRA97_28200; phage(gi100028)2.35e-54Showinfo_outline
71975342..1975638PHAGE_Paenib_PG1_NC_021558: hypothetical protein; GRA97_28205; phage(gi514231252)5.79e-37Showinfo_outline
81975804..1976175PHAGE_Paenib_PG1_NC_021558: hypothetical protein; GRA97_28210; phage(gi514231254)2.90e-32Showinfo_outline
91976172..1977860PHAGE_Lactob_PLE2_NC_031036: hypothetical protein; GRA97_28215; phage(gi100002)0.0Showinfo_outline
101977876..1979087PHAGE_Clostr_phiMMP04_NC_019422: phage portal protein; GRA97_28220; phage(gi414090444)5.08e-180Showinfo_outline
111979053..1979637PHAGE_Bacill_WBeta_NC_007734: putative Caudovirales phage prohead protease; GRA97_28225; phage(gi85701383)3.31e-50Showinfo_outline
121979651..1980814phage major capsid protein; GRA97_282300.0Showinfo_outline
131980851..1981141PHAGE_Bacill_1_NC_009737: hypothetical protein; GRA97_28235; phage(gi155042937)5.07e-09Showinfo_outline
141981144..1981416PHAGE_Paenib_PG1_NC_021558: DNA packaging protein; GRA97_28240; phage(gi514231193)2.74e-29Showinfo_outline
151981413..1981712PHAGE_Bacill_1_NC_009737: hypothetical protein; GRA97_28245; phage(gi158348414)4.69e-11Showinfo_outline
161981705..1982061PHAGE_Bacill_1_NC_009737: hypothetical protein; GRA97_28250; phage(gi155042941)2.14e-21Showinfo_outline
171982058..1982387PHAGE_Bacill_1_NC_009737: putative aminopeptidase; GRA97_28255; phage(gi155042942)2.10e-27Showinfo_outline
181982388..1982981PHAGE_Bacill_1_NC_009737: hypothetical protein; GRA97_28260; phage(gi155042943)4.84e-53Showinfo_outline
191982986..1983357PHAGE_Bacill_1_NC_009737: hypothetical protein; GRA97_28265; phage(gi155042944)7.71e-38Showinfo_outline
201983578..1984825PHAGE_Bacill_1_NC_009737: TMP repeat protein; GRA97_28270; phage(gi155042946)5.77e-155Showinfo_outline
211985091..1987475PHAGE_Paenib_PBL1c_NC_048689: hypothetical protein; GRA97_28275; phage(gi100014)4.86e-133Showinfo_outline
221987517..1988997PHAGE_Bacill_vB_BceS_MY192_NC_048633: tail fiber protein; GRA97_28280; phage(gi100052)1.02e-84Showinfo_outline
231988994..1991645PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; GRA97_28285; phage(gi31415800)0.0Showinfo_outline
241991721..1993727PHAGE_Bacill_phi4J1_NC_029008: tail fiber; GRA97_28290; phage(gi971821625)1.38e-85Showinfo_outline
251993745..1994020PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; GRA97_28295; phage(gi100072)7.44e-44Showinfo_outline
261994132..1994557PHAGE_Bacill_WBeta_NC_007734: phage holin; GRA97_28300; phage(gi85701395)2.76e-92Showinfo_outline
271994557..1995489PHAGE_Bacill_Waukesha92_NC_025424: endolysin; GRA97_28305; phage(gi712912403)0.0Showinfo_outline
281996039..1996278PHAGE_Thermu_OH2_NC_021784: SMF family protein; GRA97_28310; phage(gi526118339)1.46e-06Showinfo_outline
29complement(1996447..1996779)hypothetical protein; GRA97_283150.0Showinfo_outline
301997491..1997718PHAGE_Bacill_Deep_Purple_NC_048667: hypothetical protein; GRA97_28320; phage(gi100017)6.50e-37Showinfo_outline
311998083..1999162PHAGE_Bacill_phi105_NC_048631: hypothetical protein; GRA97_28325; phage(gi100028)9.78e-14Showinfo_outline
321999159..1999308Phr family secreted Rap phosphatase inhibitor; GRA97_283300.0Showinfo_outline
332000045..2000368PHAGE_Bacill_0305phi8_36_NC_009760: predicted transcription regulator; GRA97_28335; phage(gi156564189)5.69e-05Showinfo_outline
342000361..2000903DUF1700 domain-containing protein; GRA97_283400.0Showinfo_outline
352000904..2001710DUF4097 family beta strand repeat protein; GRA97_283450.0Showinfo_outline
36complement(2001798..2002418)PHAGE_Deep_s_D6E_NC_019544: transcriptional regulator; GRA97_28350; phage(gi423262353)3.49e-21Showinfo_outline

Region 4, total 26 CDS

#CDS PositionBLAST HitE-ValueSequence
12150319..2150336attL0.0Showinfo_outline
22162355..2162753PHAGE_Clostr_CDKM15_NC_048643: hypothetical protein; GRA97_29100; phage(gi100043)3.13e-08Showinfo_outline
32162759..2164657M48 family metalloprotease; GRA97_291050.0Showinfo_outline
42164871..2165369TetR family transcriptional regulator; GRA97_291100.0Showinfo_outline
5complement(2165515..2166057)PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GRA97_29115; phage(gi100061)1.32e-109Showinfo_outline
6complement(2166054..2166524)PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GRA97_29120; phage(gi100060)3.43e-51Showinfo_outline
7complement(2166830..2166952)PHAGE_Bacill_Gamma_NC_007458: conserved phage protein; GRA97_29125; phage(gi77020188)1.83e-05Showinfo_outline
8complement(2166970..2167299)permease; GRA97_291300.0Showinfo_outline
9complement(2167333..2167689)hypothetical protein; GRA97_291350.0Showinfo_outline
10complement(2167707..2167955)PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; GRA97_29140; phage(gi100029)2.00e-47Showinfo_outline
11complement(2168075..2168353)hypothetical protein; GRA97_291450.0Showinfo_outline
12complement(2168390..2168596)PHAGE_Lister_LP_HM00113468_NC_049900: hypothetical protein; GRA97_29150; phage(gi100027)1.36e-07Showinfo_outline
13complement(2169341..2169847)PHAGE_Bacill_phi4B1_NC_028886: hypothetical protein; GRA97_29155; phage(gi971821266)2.86e-104Showinfo_outline
142170184..2170603PHAGE_Bacill_Gamma_NC_007458: fosfomycin resistance protein; GRA97_29160; phage(gi77020174)2.60e-82Showinfo_outline
15complement(2170650..2171060)PHAGE_Bacill_Gamma_NC_007458: conserved phage protein; GRA97_29165; phage(gi77020171)3.82e-96Showinfo_outline
16complement(2171227..2171457)PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: putative phosphoesterase; GRA97_29170; phage(gi100037)9.20e-15Showinfo_outline
17complement(2171483..2171929)PHAGE_Bacill_PfEFR_4_NC_048641: HNH endonuclease; GRA97_29175; phage(gi100046)2.67e-92Showinfo_outline
18complement(2171996..2172190)PHAGE_Bacill_PfEFR_4_NC_048641: putative transcriptional regulator; GRA97_29180; phage(gi100045)3.59e-39Showinfo_outline
19complement(2172174..2172317)PHAGE_Bacill_PfEFR_4_NC_048641: DNA helicase; GRA97_29185; phage(gi100044)3.08e-25Showinfo_outline
20complement(2172326..2173270)PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; GRA97_29190; phage(gi100016)0.0Showinfo_outline
21complement(2173309..2173596)PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GRA97_29195; phage(gi100042)4.31e-64Showinfo_outline
22complement(2173609..2173863)PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; GRA97_29200; phage(gi100014)2.74e-56Showinfo_outline
23complement(2173878..2174051)PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GRA97_29205; phage(gi100040)1.26e-32Showinfo_outline
24complement(2174076..2174270)PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; GRA97_29210; phage(gi100012)3.29e-36Showinfo_outline
25complement(2174286..2174841)PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GRA97_29215; phage(gi100038)1.38e-130Showinfo_outline
262188260..2188277attR0.0Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 2209246 bps
Phages: 4
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download