Submission Results

Sequence Name: Not Available

GenBank Accession Number: WUDB01000074.1

GenInfo (GI) Number: 0000000000

Download Results: WUDB01000074.1.PHASTER.zip

gi|00000000|ref|WUDB01000074.1| Bacillus anthracis strain delta ANR NODE_133, whole genome shotgun 2118418, gc%: 35.14%

Download summary as .txt file: summary.txt file_download

Total: 2 prophage regions have been identified, of which 1 regions are intact, 1 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
139.9Kbincomplete4034194603-234591 info_outlinePHAGE_Bacill_vB_BceS_MY192_NC_048633(19)35.17%Show info_outline
260.4Kbintact14070666659-727114 info_outlinePHAGE_Bacill_1_NC_009737(9)34.70%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|WUDB01000074.1| Bacillus anthracis strain delta ANR NODE_133, whole genome shotgun 2118418, gc%: 35.14%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 36 CDS

#CDS PositionBLAST HitE-ValueSequence
1194603..194615attL0.0Showinfo_outline
2203024..203239PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GRA86_05675; phage(gi100064)8.31e-13Showinfo_outline
3203232..203594PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GRA86_05680; phage(gi100004)7.07e-72Showinfo_outline
4203756..204136PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GRA86_05685; phage(gi100005)9.57e-90Showinfo_outline
5204117..205889PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GRA86_05690; phage(gi100006)0.0Showinfo_outline
6205905..207119PHAGE_Bacill_vB_BceS_MY192_NC_048633: DNA adenine methyltransferase; GRA86_05695; phage(gi100041)0.0Showinfo_outline
7207097..207852PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; GRA86_05700; phage(gi100042)4.60e-178Showinfo_outline
8207849..209036PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GRA86_05705; phage(gi100009)0.0Showinfo_outline
9209014..209313fibronectin type III domain-containing protein; GRA86_057100.0Showinfo_outline
10209322..209597PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GRA86_05715; phage(gi100010)4.62e-57Showinfo_outline
11209584..209931PHAGE_Bacill_vB_BceS_MY192_NC_048633: putative transcriptional regulator; GRA86_05720; phage(gi100045)6.08e-81Showinfo_outline
12209919..210356PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GRA86_05725; phage(gi100012)8.07e-102Showinfo_outline
13210353..210712PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GRA86_05730; phage(gi100013)1.39e-83Showinfo_outline
14210726..211310PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GRA86_05735; phage(gi100014)6.71e-141Showinfo_outline
15211370..211780PHAGE_Bacill_vB_BceS_MY192_NC_048633: recombination protein; GRA86_05740; phage(gi100049)5.20e-65Showinfo_outline
16211782..211922PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GRA86_05745; phage(gi100016)9.73e-25Showinfo_outline
17211938..216951PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GRA86_05750; phage(gi100017)0.0Showinfo_outline
18216988..218469PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GRA86_05755; phage(gi100018)0.0Showinfo_outline
19218466..220448PHAGE_Bacill_vB_BceS_MY192_NC_048633: tail assembly protein; GRA86_05760; phage(gi100053)0.0Showinfo_outline
20220445..222550PHAGE_Bacill_phi4J1_NC_029008: tail fiber; GRA86_05765; phage(gi971821625)1.01e-49Showinfo_outline
21222575..222850PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; GRA86_05770; phage(gi100072)8.53e-43Showinfo_outline
22223006..223974PHAGE_Bacill_BceA1_NC_048628: hypothetical protein; GRA86_05775; phage(gi100020)0.0Showinfo_outline
23223979..224404PHAGE_Bacill_WBeta_NC_007734: phage holin; GRA86_05780; phage(gi85701395)2.05e-94Showinfo_outline
24224404..225108PHAGE_Paenib_Kawika_NC_048715: hypothetical protein; GRA86_05785; phage(gi100022)2.77e-82Showinfo_outline
25complement(225172..225753)PHAGE_Bacill_phIS3501_NC_019502: phage protein; GRA86_05790; phage(gi422934344)4.71e-132Showinfo_outline
26complement(225759..225941)PHAGE_Bacill_Gamma_NC_007458: hypothetical protein; GRA86_05795; phage(gi77020185)3.32e-06Showinfo_outline
27complement(225945..226151)PHAGE_Bacill_WBeta_NC_007734: conserved phage protein; GRA86_05800; phage(gi85701398)2.52e-24Showinfo_outline
28226335..226637PHAGE_Bacill_WBeta_NC_007734: conserved phage protein; GRA86_05805; phage(gi85701399)1.16e-65Showinfo_outline
29226640..226822PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; GRA86_05810; phage(gi31415810)5.53e-29Showinfo_outline
30226938..228119PHAGE_Bacill_phIS3501_NC_019502: FtsK/SpoIIIE family phage protein; GRA86_05815; phage(gi422934346)0.0Showinfo_outline
31228061..228684PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; GRA86_05820; phage(gi31415811)3.34e-131Showinfo_outline
32complement(228717..229313)PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; GRA86_05825; phage(gi100065)2.92e-109Showinfo_outline
33229730..230230DUF177 domain-containing protein; GRA86_058300.0Showinfo_outline
34230292..23046550S ribosomal protein L32; GRA86_058350.0Showinfo_outline
35230594..231100PHAGE_Bacill_Stills_NC_028777: hypothetical protein; GRA86_05840; phage(gi100026)3.19e-05Showinfo_outline
36234591..234603attR0.0Showinfo_outline

Region 2, total 74 CDS

#CDS PositionBLAST HitE-ValueSequence
1666659..666670attL0.0Showinfo_outline
2complement(668243..669208)PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; GRA86_08020; phage(gi100010)1.89e-49Showinfo_outline
3669322..670278PHAGE_Acidia_virus_NC_029316: AAA+ ATPase; GRA86_08025; phage(gi1002166819)6.54e-05Showinfo_outline
4complement(670181..670447)hypothetical protein; GRA86_080300.0Showinfo_outline
5complement(670547..671170)trimeric intracellular cation channel family protein; GRA86_080350.0Showinfo_outline
6671263..672533GTPase HflX; GRA86_080400.0Showinfo_outline
7672526..673797hypothetical protein; GRA86_080450.0Showinfo_outline
8673865..673876attL0.0Showinfo_outline
9673973..674362transcriptional repressor GlnR; GRA86_080500.0Showinfo_outline
10674411..675745type I glutamate--ammonia ligase; GRA86_080550.0Showinfo_outline
11complement(675860..676489)PHAGE_Bacill_1_NC_009737: DNA integration/recombination /inversion; GRA86_08060; phage(gi155042957)1.08e-36Showinfo_outline
12complement(676534..677004)PHAGE_Bacill_1_NC_009737: DNA integration/recombination /inversion; GRA86_08065; phage(gi155042957)3.60e-19Showinfo_outline
13complement(677229..677657)PHAGE_Anoxyb_A403_NC_048701: tail fiber protein; GRA86_08070; phage(gi100052)7.15e-27Showinfo_outline
14complement(677680..678093)PHAGE_Bacill_phi4B1_NC_028886: DNA-binding helix-turn-helix protein; GRA86_08075; phage(gi971821252)4.43e-34Showinfo_outline
15678369..678569PHAGE_Bacter_Rani_NC_029084: DNA-binding protein; GRA86_08080; phage(gi985759363)2.53e-15Showinfo_outline
16678566..679294PHAGE_Bacill_BMBtpLA_NC_028748: hypothetical protein; GRA86_08085; phage(gi971482519)2.48e-64Showinfo_outline
17679403..679669PHAGE_Bacill_PfEFR_4_NC_048641: holin; GRA86_08090; phage(gi100034)2.28e-33Showinfo_outline
18679645..679830hypothetical protein; GRA86_080950.0Showinfo_outline
19679820..680137PHAGE_Bacill_phi4J1_NC_029008: hypothetical protein; GRA86_08100; phage(gi971821611)9.72e-05Showinfo_outline
20680109..680372PHAGE_Bacill_phi4B1_NC_028886: hypothetical protein; GRA86_08105; phage(gi971821255)4.06e-16Showinfo_outline
21680387..680869PHAGE_Deep_s_D6E_NC_019544: gp157-like protein; GRA86_08110; phage(gi423262358)3.21e-45Showinfo_outline
22680866..681537PHAGE_Bacill_TP21_L_NC_011645: gp28; GRA86_08115; phage(gi216905993)1.91e-36Showinfo_outline
23681551..681823PHAGE_Bacill_phi4B1_NC_028886: hypothetical protein; GRA86_08120; phage(gi971821281)1.82e-48Showinfo_outline
24681820..682578PHAGE_Staphy_96_NC_007057: ORF015; GRA86_08125; phage(gi66395900)9.51e-43Showinfo_outline
25682514..683344PHAGE_Bacill_Pony_NC_022770: replication initiator protein; GRA86_08130; phage(gi568191570)6.10e-46Showinfo_outline
26683529..684158PHAGE_Bacill_phi4B1_NC_028886: hypothetical protein; GRA86_08135; phage(gi971821278)2.17e-32Showinfo_outline
27684161..684283Fur-regulated basic protein FbpA; GRA86_081400.0Showinfo_outline
28684378..684950PHAGE_Bacill_BMBtpLA_NC_028748: hypothetical protein; GRA86_08145; phage(gi971482529)4.99e-104Showinfo_outline
29684965..685744PHAGE_Paenib_Tadhana_NC_048691: tail tip protein; GRA86_08150; phage(gi100054)9.42e-60Showinfo_outline
30685976..686734PHAGE_Bacill_Mgbh1_NC_041879: terminase large subunit; GRA86_08155; phage(gi100070)3.16e-106Showinfo_outline
31687129..687413PHAGE_Geobac_E2_NC_009552: hypothetical protein; GRA86_08160; phage(gi148747780)5.83e-45Showinfo_outline
32687445..687771PHAGE_Bacill_1_NC_009737: hypothetical protein; GRA86_08165; phage(gi158348419)5.43e-07Showinfo_outline
33687982..688221hypothetical protein; GRA86_081700.0Showinfo_outline
34688681..689490hypothetical protein; GRA86_081750.0Showinfo_outline
35689672..689920hypothetical protein; GRA86_081800.0Showinfo_outline
36690274..692904acyltransferase; GRA86_081850.0Showinfo_outline
37692925..693488RNA helicase; GRA86_081900.0Showinfo_outline
38694057..694560PHAGE_Aeriba_AP45_NC_048651: hypothetical protein; GRA86_08195; phage(gi100027)1.55e-76Showinfo_outline
39694709..695848PHAGE_Bacill_vB_BmeM_Goe8_NC_048797: tail fibers protein; GRA86_08200; phage(gi100168)2.67e-07Showinfo_outline
40695917..696129PHAGE_Bacill_Mater_NC_027366: tail assembly protein; GRA86_08205; phage(gi100053)6.01e-13Showinfo_outline
41complement(696168..696803)restriction endonuclease; GRA86_082100.0Showinfo_outline
42696944..697276PHAGE_Vibrio_PWH3a_P1_NC_020863: hypothetical protein; GRA86_08215; phage(gi472342476)3.07e-05Showinfo_outline
43697309..698292HNH endonuclease; GRA86_082200.0Showinfo_outline
44698407..699183hypothetical protein; GRA86_082250.0Showinfo_outline
45699752..700030PHAGE_Bacill_Deep_Purple_NC_048667: hypothetical protein; GRA86_08230; phage(gi100017)2.46e-10Showinfo_outline
46700151..700576hypothetical protein; GRA86_082350.0Showinfo_outline
47complement(700663..701085)PHAGE_Aeriba_AP45_NC_048651: hypothetical protein; GRA86_08240; phage(gi100028)2.35e-54Showinfo_outline
48701849..702145PHAGE_Paenib_PG1_NC_021558: hypothetical protein; GRA86_08245; phage(gi514231252)5.79e-37Showinfo_outline
49702311..702682PHAGE_Paenib_PG1_NC_021558: hypothetical protein; GRA86_08250; phage(gi514231254)2.90e-32Showinfo_outline
50702679..704367PHAGE_Lactob_PLE2_NC_031036: hypothetical protein; GRA86_08255; phage(gi100002)0.0Showinfo_outline
51704383..705594PHAGE_Clostr_phiMMP04_NC_019422: phage portal protein; GRA86_08260; phage(gi414090444)5.08e-180Showinfo_outline
52705560..706144PHAGE_Bacill_WBeta_NC_007734: putative Caudovirales phage prohead protease; GRA86_08265; phage(gi85701383)3.31e-50Showinfo_outline
53706158..707321phage major capsid protein; GRA86_082700.0Showinfo_outline
54707358..707648PHAGE_Bacill_1_NC_009737: hypothetical protein; GRA86_08275; phage(gi155042937)5.07e-09Showinfo_outline
55707651..707923PHAGE_Paenib_PG1_NC_021558: DNA packaging protein; GRA86_08280; phage(gi514231193)2.74e-29Showinfo_outline
56707920..708219PHAGE_Bacill_1_NC_009737: hypothetical protein; GRA86_08285; phage(gi158348414)4.69e-11Showinfo_outline
57708212..708568PHAGE_Bacill_1_NC_009737: hypothetical protein; GRA86_08290; phage(gi155042941)2.14e-21Showinfo_outline
58708565..708894PHAGE_Bacill_1_NC_009737: putative aminopeptidase; GRA86_08295; phage(gi155042942)2.10e-27Showinfo_outline
59708895..709488PHAGE_Bacill_1_NC_009737: hypothetical protein; GRA86_08300; phage(gi155042943)4.84e-53Showinfo_outline
60709493..709864PHAGE_Bacill_1_NC_009737: hypothetical protein; GRA86_08305; phage(gi155042944)7.71e-38Showinfo_outline
61710085..711332PHAGE_Bacill_1_NC_009737: TMP repeat protein; GRA86_08310; phage(gi155042946)5.77e-155Showinfo_outline
62711598..713982PHAGE_Paenib_PBL1c_NC_048689: hypothetical protein; GRA86_08315; phage(gi100014)4.86e-133Showinfo_outline
63714024..715504PHAGE_Bacill_vB_BceS_MY192_NC_048633: tail fiber protein; GRA86_08320; phage(gi100052)1.02e-84Showinfo_outline
64715501..718152PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; GRA86_08325; phage(gi31415800)0.0Showinfo_outline
65718228..720234PHAGE_Bacill_phi4J1_NC_029008: tail fiber; GRA86_08330; phage(gi971821625)1.38e-85Showinfo_outline
66720252..720527PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; GRA86_08335; phage(gi100072)7.44e-44Showinfo_outline
67720639..721064PHAGE_Bacill_WBeta_NC_007734: phage holin; GRA86_08340; phage(gi85701395)2.76e-92Showinfo_outline
68721064..721996PHAGE_Bacill_Waukesha92_NC_025424: endolysin; GRA86_08345; phage(gi712912403)0.0Showinfo_outline
69722546..722785PHAGE_Thermu_OH2_NC_021784: SMF family protein; GRA86_08350; phage(gi526118339)1.46e-06Showinfo_outline
70complement(722954..723286)hypothetical protein; GRA86_083550.0Showinfo_outline
71723823..723834attR0.0Showinfo_outline
72723998..724225PHAGE_Bacill_Deep_Purple_NC_048667: hypothetical protein; GRA86_08360; phage(gi100017)6.50e-37Showinfo_outline
73724590..725669PHAGE_Bacill_phi105_NC_048631: hypothetical protein; GRA86_08365; phage(gi100028)9.78e-14Showinfo_outline
74727114..727125attR0.0Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 2118418 bps
Phages: 2
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download