Submission Results

Sequence Name: Not Available

GenBank Accession Number: WUUI01000013.1

GenInfo (GI) Number: 0000000000

Download Results: WUUI01000013.1.PHASTER.zip

gi|00000000|ref|WUUI01000013.1| Clostridioides difficile strain TMD0138 139596, gc%: 28.07%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
174.7Kbintact1409321851-96553 info_outlinePHAGE_Clostr_phiMMP03_NC_028959(59)28.27%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|WUUI01000013.1| Clostridioides difficile strain TMD0138 139596, gc%: 28.07%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 97 CDS

#CDS PositionBLAST HitE-ValueSequence
121851..21862attL0.0Showinfo_outline
224006..24017attL0.0Showinfo_outline
3complement(28039..28422)PHAGE_Clostr_phiMMP01_NC_028883: putative transcriptional regulator; GSM30_13110; phage(gi971820005)4.20e-82Showinfo_outline
4complement(28532..28909)PHAGE_Clostr_phiMMP01_NC_028883: hypothetical protein; GSM30_13115; phage(gi971820004)8.46e-65Showinfo_outline
5complement(29416..29559)PHAGE_Clostr_phiMMP02_NC_019421: hypothetical protein; GSM30_13120; phage(gi414090403)2.22e-26Showinfo_outline
629819..30007PHAGE_Clostr_phiMMP01_NC_028883: hypothetical protein; GSM30_13125; phage(gi971820002)1.25e-36Showinfo_outline
730709..31230PHAGE_Clostr_phiCD27_NC_011398: hypothetical protein; GSM30_13130; phage(gi209901275)1.08e-126Showinfo_outline
831206..32792PHAGE_Clostr_phiCD27_NC_011398: hypothetical protein; GSM30_13135; phage(gi209901274)0.0Showinfo_outline
9complement(32856..33374)PHAGE_Clostr_phiCD27_NC_011398: hypothetical protein; GSM30_13140; phage(gi209901273)1.09e-115Showinfo_outline
10complement(33540..33902)PHAGE_Clostr_phiCD27_NC_011398: hypothetical protein; GSM30_13145; phage(gi209901272)2.06e-81Showinfo_outline
11complement(33983..34790)PHAGE_Clostr_phiMMP01_NC_028883: Endolysin; GSM30_13150; phage(gi971819998)2.04e-26Showinfo_outline
12complement(34790..35221)PHAGE_Clostr_phiCDHM19_NC_028996: putative holin protein; GSM30_13155; phage(gi971763904)4.35e-99Showinfo_outline
13complement(35283..35420)PHAGE_Clostr_phiCDHM19_NC_028996: conserved hypothetical protein (XkdK-like); GSM30_13160; phage(gi971763903)2.58e-25Showinfo_outline
14complement(35422..35721)PHAGE_Clostr_phiCD505_NC_028764: hypothetical protein; GSM30_13165; phage(gi971819860)3.37e-66Showinfo_outline
15complement(35718..36953)PHAGE_Clostr_phiCD505_NC_028764: hypothetical protein; GSM30_13170; phage(gi971819859)0.0Showinfo_outline
16complement(36988..37170)PHAGE_Clostr_phiMMP01_NC_028883: hypothetical protein; GSM30_13175; phage(gi971819994)4.10e-36Showinfo_outline
17complement(37170..37382)PHAGE_Clostr_phiMMP01_NC_028883: hypothetical protein; GSM30_13180; phage(gi971819993)1.29e-39Showinfo_outline
18complement(37392..38030)PHAGE_Clostr_phiMMP01_NC_028883: hypothetical protein; GSM30_13185; phage(gi971819992)8.14e-150Showinfo_outline
19complement(38044..39153)PHAGE_Clostr_phiMMP01_NC_028883: putative tail fiber protein; GSM30_13190; phage(gi971819991)0.0Showinfo_outline
20complement(39165..39782)PHAGE_Clostr_phiMMP01_NC_028883: hypothetical protein; GSM30_13195; phage(gi971819990)5.00e-146Showinfo_outline
21complement(39775..40824)PHAGE_Clostr_phiMMP01_NC_028883: hypothetical protein; GSM30_13200; phage(gi971819989)0.0Showinfo_outline
22complement(40825..41244)PHAGE_Clostr_phiMMP01_NC_028883: hypothetical protein; GSM30_13205; phage(gi971819988)2.17e-93Showinfo_outline
23complement(41249..41509)PHAGE_Clostr_phiMMP01_NC_028883: hypothetical protein; GSM30_13210; phage(gi971819987)3.83e-48Showinfo_outline
24complement(41523..43478)PHAGE_Clostr_phiMMP01_NC_028883: putative phage cell wall hydrolase; GSM30_13215; phage(gi971819986)0.0Showinfo_outline
25complement(43471..44166)PHAGE_Clostr_phiMMP01_NC_028883: putative LysM; GSM30_13220; phage(gi971819985)1.10e-136Showinfo_outline
26complement(44182..46554)PHAGE_Clostr_phiMMP01_NC_028883: putative tail tape measure protein; GSM30_13225; phage(gi971819984)0.0Showinfo_outline
27complement(46620..47387)PHAGE_Clostr_CDMH1_NC_024144: hypothetical protein; GSM30_13230; phage(gi640884878)2.58e-65Showinfo_outline
28complement(47526..48053)PHAGE_Clostr_phiMMP01_NC_028883: conserved exported protein of unknown function; GSM30_13235; phage(gi971819982)3.64e-120Showinfo_outline
29complement(49215..49568)PHAGE_Clostr_CDMH1_NC_024144: putative anti-repressor protein; GSM30_13240; phage(gi640884877)2.03e-42Showinfo_outline
30complement(49650..49994)PHAGE_Geobac_E3_NC_029073: toxin-antitoxin-like protein; GSM30_13245; phage(gi985758520)3.03e-28Showinfo_outline
3150263..50481PHAGE_Bacter_Lily_NC_028841: Xre-like protein; GSM30_13250; phage(gi971748289)2.09e-07Showinfo_outline
32complement(51108..51974)PHAGE_Clostr_CDMH1_NC_024144: putative anti-repressor protein; GSM30_13255; phage(gi640884877)1.89e-134Showinfo_outline
33complement(52093..52281)PHAGE_Clostr_CDMH1_NC_024144: hypothetical protein; GSM30_13260; phage(gi640884876)3.59e-34Showinfo_outline
34complement(53538..53699)PHAGE_Clostr_phiMMP01_NC_028883: hypothetical protein; GSM30_13265; phage(gi971819980)8.84e-18Showinfo_outline
35complement(53846..54040)PHAGE_Strept_EJ_1_NC_005294: hypothetical protein; GSM30_13270; phage(gi39653729)6.82e-08Showinfo_outline
36complement(54040..54480)PHAGE_Clostr_phiMMP01_NC_028883: hypothetical protein; GSM30_13275; phage(gi971819979)1.02e-63Showinfo_outline
37complement(54552..55022)PHAGE_Clostr_phiMMP01_NC_028883: putative core tail; GSM30_13280; phage(gi971819977)1.12e-95Showinfo_outline
38complement(55039..56349)PHAGE_Clostr_phiMMP01_NC_028883: putative sheath tail protein; GSM30_13285; phage(gi971819976)0.0Showinfo_outline
39complement(56350..56526)PHAGE_Clostr_phiMMP01_NC_028883: hypothetical protein; GSM30_13290; phage(gi971819975)1.74e-29Showinfo_outline
40complement(56519..56956)PHAGE_Clostr_phiMMP01_NC_028883: hypothetical protein; GSM30_13295; phage(gi971819974)2.21e-97Showinfo_outline
41complement(56949..57374)PHAGE_Clostr_phiMMP01_NC_028883: hypothetical protein; GSM30_13300; phage(gi971819973)4.35e-101Showinfo_outline
42complement(57374..57721)PHAGE_Clostr_phiMMP01_NC_028883: hypothetical protein; GSM30_13305; phage(gi971819972)1.86e-69Showinfo_outline
43complement(57715..58116)PHAGE_Clostr_phiMMP01_NC_028883: hypothetical protein; GSM30_13310; phage(gi971819971)3.52e-85Showinfo_outline
44complement(58126..58359)PHAGE_Clostr_phiMMP01_NC_028883: hypothetical protein; GSM30_13315; phage(gi971819970)1.97e-47Showinfo_outline
45complement(58359..59258)PHAGE_Clostr_phiMMP01_NC_028883: Capsid protein; GSM30_13320; phage(gi971819969)0.0Showinfo_outline
46complement(59270..59833)PHAGE_Clostr_phiMMP01_NC_028883: putative scaffold protein; GSM30_13325; phage(gi971819968)2.82e-130Showinfo_outline
47complement(59875..60069)PHAGE_Clostr_CDMH1_NC_024144: hypothetical protein; GSM30_13330; phage(gi640884863)4.46e-30Showinfo_outline
48complement(60092..60718)PHAGE_Clostr_phiCD119_NC_007917: hypothetical protein; GSM30_13335; phage(gi90592643)1.62e-125Showinfo_outline
49complement(60718..61113)PHAGE_Clostr_phiCD111_NC_028905: hypothetical protein; GSM30_13340; phage(gi971820050)1.90e-12Showinfo_outline
50complement(61115..61360)hypothetical protein; GSM30_133450.0Showinfo_outline
51complement(61431..61589)hypothetical protein; GSM30_133500.0Showinfo_outline
52complement(61591..63078)PHAGE_Clostr_phiMMP01_NC_028883: putative head morphogenesis protein; GSM30_13355; phage(gi971819966)0.0Showinfo_outline
53complement(63068..64507)PHAGE_Clostr_phiMMP01_NC_028883: Phage portal protein, SPP1 family; GSM30_13360; phage(gi971819965)0.0Showinfo_outline
54complement(64513..65754)PHAGE_Clostr_phiMMP01_NC_028883: putative phage terminase large subunit; GSM30_13365; phage(gi971819964)0.0Showinfo_outline
55complement(65744..66433)PHAGE_Clostr_phiMMP01_NC_028883: putative phage-related terminase small subunit; skin element; GSM30_13370; phage(gi971819963)8.95e-131Showinfo_outline
56complement(66495..67061)hypothetical protein; GSM30_133750.0Showinfo_outline
57complement(67505..67723)hypothetical protein; GSM30_133800.0Showinfo_outline
58complement(67930..68176)hypothetical protein; GSM30_133850.0Showinfo_outline
59complement(68621..69109)PHAGE_Clostr_phiCD119_NC_007917: hypothetical protein; GSM30_13390; phage(gi90592709)6.25e-113Showinfo_outline
60complement(69203..69928)PHAGE_Clostr_phiCDHM19_NC_028996: putative anti-repressor protein; GSM30_13395; phage(gi971763946)3.95e-175Showinfo_outline
61complement(69943..70350)PHAGE_Clostr_phiCDHM19_NC_028996: putative endonuclease protein; GSM30_13400; phage(gi971763945)5.65e-86Showinfo_outline
62complement(70347..70460)PHAGE_Clostr_phiMMP01_NC_028883: hypothetical protein; GSM30_13405; phage(gi971820033)2.08e-07Showinfo_outline
63complement(70476..70817)PHAGE_Clostr_phiMMP03_NC_028959: hypothetical protein; GSM30_13410; phage(gi971820292)5.03e-76Showinfo_outline
64complement(70892..71074)PHAGE_Clostr_phiCD27_NC_011398: hypothetical protein; GSM30_13415; phage(gi209901302)3.12e-35Showinfo_outline
65complement(71077..71448)PHAGE_Clostr_phiCD27_NC_011398: hypothetical protein; GSM30_13420; phage(gi209901301)2.39e-84Showinfo_outline
66complement(71485..71814)PHAGE_Clostr_phiCD27_NC_011398: hypothetical protein; GSM30_13425; phage(gi209901300)3.06e-74Showinfo_outline
67complement(71896..72900)PHAGE_Clostr_phiMMP03_NC_028959: hypothetical protein; GSM30_13430; phage(gi971820288)0.0Showinfo_outline
68complement(72912..73121)PHAGE_Clostr_phiMMP03_NC_028959: hypothetical protein; GSM30_13435; phage(gi971820287)1.49e-42Showinfo_outline
69complement(73201..74274)PHAGE_Clostr_CDMH1_NC_024144: putative DNA methylase protein; GSM30_13440; phage(gi640884928)0.0Showinfo_outline
70complement(74563..74679)PHAGE_Clostr_phiMMP01_NC_028883: hypothetical protein; GSM30_13445; phage(gi971820032)3.72e-16Showinfo_outline
71complement(74663..75112)PHAGE_Clostr_phiCD505_NC_028764: hypothetical protein; GSM30_13450; phage(gi971819893)2.08e-99Showinfo_outline
72complement(75230..75595)PHAGE_Clostr_phiMMP01_NC_028883: hypothetical protein; GSM30_13455; phage(gi971820030)4.28e-66Showinfo_outline
73complement(75609..75860)PHAGE_Clostr_phiMMP01_NC_028883: hypothetical protein; GSM30_13460; phage(gi971820029)4.93e-40Showinfo_outline
74complement(76180..76587)PHAGE_Clostr_phiCD119_NC_007917: hypothetical protein; GSM30_13465; phage(gi90592689)1.65e-95Showinfo_outline
75complement(76603..76776)PHAGE_Clostr_phiCD27_NC_011398: putative resolvase/integrase; GSM30_13470; phage(gi209901293)5.15e-34Showinfo_outline
76complement(76837..77718)PHAGE_Clostr_phiMMP01_NC_028883: putative DnaD; GSM30_13475; phage(gi971820025)0.0Showinfo_outline
77complement(77733..78317)PHAGE_Clostr_phiMMP01_NC_028883: putative phage essential recombination function protein; GSM30_13480; phage(gi971820024)1.83e-139Showinfo_outline
78complement(78327..78836)PHAGE_Clostr_phiMMP01_NC_028883: hypothetical protein; GSM30_13485; phage(gi971820023)1.57e-113Showinfo_outline
79complement(78914..79231)PHAGE_Clostr_phiMMP01_NC_028883: hypothetical protein; GSM30_13490; phage(gi971820022)2.62e-65Showinfo_outline
80complement(79381..79824)PHAGE_Clostr_phiMMP01_NC_028883: hypothetical protein; GSM30_13495; phage(gi971820020)2.85e-97Showinfo_outline
81complement(79854..80051)PHAGE_Clostr_phiMMP01_NC_028883: putative repressor; GSM30_13500; phage(gi971820019)1.38e-38Showinfo_outline
8280104..80304PHAGE_Clostr_phiMMP01_NC_028883: hypothetical protein; GSM30_13505; phage(gi971820018)3.13e-35Showinfo_outline
83complement(80291..80488)PHAGE_Clostr_phiMMP01_NC_028883: hypothetical protein; GSM30_13510; phage(gi971820017)1.72e-38Showinfo_outline
84complement(80548..81339)PHAGE_Clostr_phiMMP01_NC_028883: Predicted prophage antirepressor; GSM30_13515; phage(gi971820016)0.0Showinfo_outline
85complement(81342..81512)PHAGE_Clostr_phiMMP01_NC_028883: hypothetical protein; GSM30_13520; phage(gi971820015)2.31e-33Showinfo_outline
8681633..81944PHAGE_Clostr_phiMMP01_NC_028883: hypothetical protein; GSM30_13525; phage(gi971820014)3.35e-68Showinfo_outline
87complement(81930..82067)PHAGE_Clostr_phiMMP01_NC_028883: hypothetical protein; GSM30_13530; phage(gi971820013)7.53e-26Showinfo_outline
88complement(82122..82910)PHAGE_Clostr_phiMMP01_NC_028883: putative SPBc2 prophage-derived antirepressor protein yoqD; GSM30_13535; phage(gi971820012)0.0Showinfo_outline
89complement(82879..83142)PHAGE_Clostr_phiMMP01_NC_028883: hypothetical protein; GSM30_13540; phage(gi971820011)1.09e-56Showinfo_outline
9083321..83716PHAGE_Clostr_phiMMP01_NC_028883: putative repressor; GSM30_13545; phage(gi971820010)9.36e-88Showinfo_outline
91complement(83753..83890)PHAGE_Clostr_phiMMP01_NC_028883: hypothetical protein; GSM30_13550; phage(gi971820009)6.94e-21Showinfo_outline
9284174..84395PHAGE_Clostr_phiMMP01_NC_028883: putative cI repressor; GSM30_13555; phage(gi971820008)8.78e-44Showinfo_outline
9384454..84660PHAGE_Clostr_phiMMP01_NC_028883: hypothetical protein; GSM30_13560; phage(gi971820007)2.92e-42Showinfo_outline
9484721..84732attR0.0Showinfo_outline
9584750..85964PHAGE_Clostr_phiMMP01_NC_028883: putative integrase; GSM30_13565; phage(gi971820006)0.0Showinfo_outline
96complement(86073..86231)PHAGE_Strept_phiC31_NC_001978: gp26; GSM30_13570; phage(gi40807292)4.42e-06Showinfo_outline
9796553..96564attR0.0Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 139596 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download