Submission Results

Sequence Name: Not Available

GenBank Accession Number: WXXI01000043.1

GenInfo (GI) Number: 0000000000

Download Results: WXXI01000043.1.PHASTER.zip

gi|00000000|ref|WXXI01000043.1| Bacillus anthracis strain delta ANR S1-2 NODE_51_1, whole genome 881087, gc%: 36.15%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
155.1Kbincomplete5056704311-759480 info_outlinePHAGE_Bacill_vB_BceS_MY192_NC_048633(27)35.21%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|WXXI01000043.1| Bacillus anthracis strain delta ANR S1-2 NODE_51_1, whole genome 881087, gc%: 36.15%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 60 CDS

#CDS PositionBLAST HitE-ValueSequence
1704311..704322attL0.0Showinfo_outline
2complement(708937..709875)PHAGE_Bacill_G_NC_023719: gp245; GRA88_23555; phage(gi593777701)2.98e-21Showinfo_outline
3complement(709993..711099)two-component sensor histidine kinase; GRA88_235600.0Showinfo_outline
4complement(711104..711742)PHAGE_Altero_vB_AmaP_AD45_P1_NC_021532: hypothetical protein; GRA88_23565; phage(gi514051613)5.84e-06Showinfo_outline
5712026..712158RNA polymerase subunit sigma; GRA88_235700.0Showinfo_outline
6712206..712337PHAGE_Bacill_PfEFR_4_NC_048641: DNA adenine methyltransferase; GRA88_23575; phage(gi100041)3.61e-24Showinfo_outline
7712350..712637PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GRA88_23580; phage(gi100042)4.31e-64Showinfo_outline
8712676..713620PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; GRA88_23585; phage(gi100016)0.0Showinfo_outline
9713629..713772PHAGE_Bacill_PfEFR_4_NC_048641: DNA helicase; GRA88_23590; phage(gi100044)3.08e-25Showinfo_outline
10713756..713950PHAGE_Bacill_PfEFR_4_NC_048641: putative transcriptional regulator; GRA88_23595; phage(gi100045)3.59e-39Showinfo_outline
11714017..714463PHAGE_Bacill_PfEFR_4_NC_048641: HNH endonuclease; GRA88_23600; phage(gi100046)2.67e-92Showinfo_outline
12714489..714719PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: putative phosphoesterase; GRA88_23605; phage(gi100037)9.20e-15Showinfo_outline
13714886..715296PHAGE_Bacill_Gamma_NC_007458: conserved phage protein; GRA88_23610; phage(gi77020171)3.82e-96Showinfo_outline
14complement(715343..715762)PHAGE_Bacill_Gamma_NC_007458: fosfomycin resistance protein; GRA88_23615; phage(gi77020174)2.60e-82Showinfo_outline
15716099..716605PHAGE_Bacill_phi4B1_NC_028886: hypothetical protein; GRA88_23620; phage(gi971821266)2.86e-104Showinfo_outline
16717350..717556PHAGE_Lister_LP_HM00113468_NC_049900: hypothetical protein; GRA88_23625; phage(gi100027)1.36e-07Showinfo_outline
17717593..717871hypothetical protein; GRA88_236300.0Showinfo_outline
18718257..718613hypothetical protein; GRA88_236350.0Showinfo_outline
19718647..718976permease; GRA88_236400.0Showinfo_outline
20718994..719116PHAGE_Bacill_Gamma_NC_007458: conserved phage protein; GRA88_23645; phage(gi77020188)1.83e-05Showinfo_outline
21719422..719892PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GRA88_23650; phage(gi100060)3.43e-51Showinfo_outline
22719889..720431PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GRA88_23655; phage(gi100061)1.32e-109Showinfo_outline
23720595..720607attL0.0Showinfo_outline
24720705..721526hypothetical protein; GRA88_236600.0Showinfo_outline
25721914..722129PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GRA88_23665; phage(gi100064)8.31e-13Showinfo_outline
26722122..722484PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GRA88_23670; phage(gi100004)7.07e-72Showinfo_outline
27722646..723026PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GRA88_23675; phage(gi100005)9.57e-90Showinfo_outline
28723007..724779PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GRA88_23680; phage(gi100006)0.0Showinfo_outline
29724795..726009PHAGE_Bacill_vB_BceS_MY192_NC_048633: DNA adenine methyltransferase; GRA88_23685; phage(gi100041)0.0Showinfo_outline
30725987..726742PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; GRA88_23690; phage(gi100042)4.60e-178Showinfo_outline
31726739..727926PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GRA88_23695; phage(gi100009)0.0Showinfo_outline
32727904..728203fibronectin type III domain-containing protein; GRA88_237000.0Showinfo_outline
33728212..728487PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GRA88_23705; phage(gi100010)4.62e-57Showinfo_outline
34728474..728821PHAGE_Bacill_vB_BceS_MY192_NC_048633: putative transcriptional regulator; GRA88_23710; phage(gi100045)6.08e-81Showinfo_outline
35728809..729246PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GRA88_23715; phage(gi100012)8.07e-102Showinfo_outline
36729243..729602PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GRA88_23720; phage(gi100013)1.39e-83Showinfo_outline
37729616..730200PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GRA88_23725; phage(gi100014)6.71e-141Showinfo_outline
38730260..730670PHAGE_Bacill_vB_BceS_MY192_NC_048633: recombination protein; GRA88_23730; phage(gi100049)5.20e-65Showinfo_outline
39730672..730812PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GRA88_23735; phage(gi100016)9.73e-25Showinfo_outline
40730828..735841PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GRA88_23740; phage(gi100017)0.0Showinfo_outline
41735878..737359PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GRA88_23745; phage(gi100018)0.0Showinfo_outline
42737356..739338PHAGE_Bacill_vB_BceS_MY192_NC_048633: tail assembly protein; GRA88_23750; phage(gi100053)0.0Showinfo_outline
43739335..741440PHAGE_Bacill_phi4J1_NC_029008: tail fiber; GRA88_23755; phage(gi971821625)1.01e-49Showinfo_outline
44741465..741740PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; GRA88_23760; phage(gi100072)8.53e-43Showinfo_outline
45741896..742864PHAGE_Bacill_BceA1_NC_048628: hypothetical protein; GRA88_23765; phage(gi100020)0.0Showinfo_outline
46742869..743294PHAGE_Bacill_WBeta_NC_007734: phage holin; GRA88_23770; phage(gi85701395)2.05e-94Showinfo_outline
47743294..743998PHAGE_Paenib_Kawika_NC_048715: hypothetical protein; GRA88_23775; phage(gi100022)2.77e-82Showinfo_outline
48complement(744062..744643)PHAGE_Bacill_phIS3501_NC_019502: phage protein; GRA88_23780; phage(gi422934344)4.71e-132Showinfo_outline
49complement(744649..744831)PHAGE_Bacill_Gamma_NC_007458: hypothetical protein; GRA88_23785; phage(gi77020185)3.32e-06Showinfo_outline
50complement(744835..745041)PHAGE_Bacill_WBeta_NC_007734: conserved phage protein; GRA88_23790; phage(gi85701398)2.52e-24Showinfo_outline
51745225..745527PHAGE_Bacill_WBeta_NC_007734: conserved phage protein; GRA88_23795; phage(gi85701399)1.16e-65Showinfo_outline
52745530..745712PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; GRA88_23800; phage(gi31415810)5.53e-29Showinfo_outline
53745828..747009PHAGE_Bacill_phIS3501_NC_019502: FtsK/SpoIIIE family phage protein; GRA88_23805; phage(gi422934346)0.0Showinfo_outline
54746951..747574PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; GRA88_23810; phage(gi31415811)3.34e-131Showinfo_outline
55complement(747607..748203)PHAGE_Bacill_vB_BceS_MY192_NC_048633: hypothetical protein; GRA88_23815; phage(gi100065)2.92e-109Showinfo_outline
56748620..749120DUF177 domain-containing protein; GRA88_238200.0Showinfo_outline
57749182..74935550S ribosomal protein L32; GRA88_238250.0Showinfo_outline
58749484..749990PHAGE_Bacill_Stills_NC_028777: hypothetical protein; GRA88_23830; phage(gi100026)3.19e-05Showinfo_outline
59750535..750547attR0.0Showinfo_outline
60759480..759491attR0.0Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 881087 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download