Submission Results

Sequence Name: Not Available

GenBank Accession Number: WXXJ01000001.1

GenInfo (GI) Number: 0000000000

Download Results: WXXJ01000001.1.PHASTER.zip

gi|00000000|ref|WXXJ01000001.1| Bacillus anthracis strain delta ANR S1-1 NODE_107, whole genome 458324, gc%: 35.05%

Download summary as .txt file: summary.txt file_download

Total: 2 prophage regions have been identified, of which 0 regions are intact, 0 regions are incomplete, and 2 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
149.2Kbquestionable904620183-69421 info_outlinePHAGE_Bacill_phBC6A52_NC_004821(9)35.42%Show info_outline
230.3Kbquestionable7030169786-200125 info_outlinePHAGE_Bacill_phi4B1_NC_028886(6)34.95%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|WXXJ01000001.1| Bacillus anthracis strain delta ANR S1-1 NODE_107, whole genome 458324, gc%: 35.05%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 50 CDS

#CDS PositionBLAST HitE-ValueSequence
120183..20194attL0.0Showinfo_outline
2complement(31034..32158)PHAGE_Bacill_phBC6A52_NC_004821: DNA integration/recombination/invertion protein; GRA87_00160; phage(gi31415821)9.09e-89Showinfo_outline
3complement(32874..33218)PHAGE_Bacill_phBC6A51_NC_004820: Transcriptional regulator, MerR family; GRA87_00165; phage(gi31415741)8.47e-28Showinfo_outline
433753..34928PHAGE_Bacill_phBC6A52_NC_004821: helix-turn-helix protein; GRA87_00170; phage(gi31415822)1.13e-29Showinfo_outline
534946..35092PHAGE_Bacill_BMBtpLA_NC_028748: hypothetical protein; GRA87_00175; phage(gi971482515)6.64e-06Showinfo_outline
6complement(35422..35763)PHAGE_Lister_A500_NC_009810: gp33; GRA87_00180; phage(gi157324992)1.85e-16Showinfo_outline
735938..36159PHAGE_Paenib_phiIBB_Pl23_NC_021865: hypothetical protein; GRA87_00185; phage(gi526245045)6.57e-09Showinfo_outline
836177..36908PHAGE_Bacill_PfEFR_5_NC_031055: holin; GRA87_00190; phage(gi100034)6.34e-168Showinfo_outline
936951..36963attL0.0Showinfo_outline
1036953..37303PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; GRA87_00195; phage(gi100039)2.73e-06Showinfo_outline
1137300..37467PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; GRA87_00200; phage(gi31415826)4.72e-28Showinfo_outline
1237497..37682PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; GRA87_00205; phage(gi31415827)9.68e-25Showinfo_outline
1337679..38551PHAGE_Bacill_BceA1_NC_048628: DNA adenine methyltransferase; GRA87_00210; phage(gi100041)1.80e-70Showinfo_outline
1438520..39323PHAGE_Bacill_PfEFR_4_NC_048641: hypothetical protein; GRA87_00215; phage(gi100038)0.0Showinfo_outline
1539339..39533PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; GRA87_00220; phage(gi31415830)7.55e-31Showinfo_outline
1639558..39731PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; GRA87_00225; phage(gi31415831)1.90e-31Showinfo_outline
1739746..40000PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; GRA87_00230; phage(gi31415832)1.81e-49Showinfo_outline
1840012..40428PHAGE_Bacill_250_NC_029024: hypothetical protein; GRA87_00235; phage(gi971766652)1.21e-29Showinfo_outline
1940444..40908PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; GRA87_00240; phage(gi100062)5.96e-27Showinfo_outline
2040946..41125PHAGE_Bacill_IEBH_NC_011167: hypothetical protein; GRA87_00245; phage(gi197261535)1.52e-34Showinfo_outline
2141174..41458PHAGE_Bacill_BceA1_NC_048628: recombination protein; GRA87_00250; phage(gi100049)5.51e-15Showinfo_outline
2241658..42257PHAGE_Bacill_BM5_NC_029069: hypothetical protein; GRA87_00255; phage(gi985757819)2.00e-54Showinfo_outline
2342870..43274PHAGE_Bacill_vB_BtS_B83_NC_048762: hypothetical protein; GRA87_00260; phage(gi100060)8.77e-40Showinfo_outline
2443274..43720PHAGE_Bacill_BMBtpLA_NC_028748: hypothetical protein; GRA87_00265; phage(gi971482538)1.53e-74Showinfo_outline
2543761..43943PHAGE_Bacill_Evoli_NC_024207: hypothetical protein; GRA87_00270; phage(gi643217575)4.40e-23Showinfo_outline
2643975..44349hypothetical protein; GRA87_002750.0Showinfo_outline
2744455..44811PHAGE_Bacill_PBS1_NC_043027: hypothetical protein; GRA87_00280; phage(gi100224)3.63e-07Showinfo_outline
2844839..45027PHAGE_Bacill_BCU4_NC_047735: hypothetical protein; GRA87_00285; phage(gi100118)1.89e-15Showinfo_outline
2945032..45154DUF3983 domain-containing protein; GRA87_002900.0Showinfo_outline
3045468..45950PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein; GRA87_00295; phage(gi31415839)3.14e-116Showinfo_outline
3145950..46243PHAGE_Bacill_phBC6A52_NC_004821: DNA integration/recombination/invertion protein; GRA87_00300; phage(gi31415840)7.14e-63Showinfo_outline
3246271..46492PHAGE_Bacill_phBC6A52_NC_004821: DNA integration/recombination/invertion protein; GRA87_00305; phage(gi31415840)8.62e-47Showinfo_outline
3347081..47383PHAGE_Paenib_PG1_NC_021558: hypothetical protein; GRA87_00310; phage(gi514231252)1.24e-40Showinfo_outline
3447380..47547PHAGE_Bacill_Mgbh1_NC_041879: hypothetical protein; GRA87_00315; phage(gi100036)8.60e-14Showinfo_outline
3547791..48162PHAGE_Paenib_PG1_NC_021558: hypothetical protein; GRA87_00320; phage(gi514231254)3.92e-32Showinfo_outline
3648159..49847PHAGE_Lactob_PLE2_NC_031036: hypothetical protein; GRA87_00325; phage(gi100002)0.0Showinfo_outline
3749861..51083phage portal protein; GRA87_003300.0Showinfo_outline
3851040..51621PHAGE_Bacill_WBeta_NC_007734: putative Caudovirales phage prohead protease; GRA87_00335; phage(gi85701383)2.66e-41Showinfo_outline
3951640..52830PHAGE_Entero_DT57C_NC_027356: major head protein; GRA87_00340; phage(gi849253286)1.63e-07Showinfo_outline
4052846..53103PHAGE_Bacill_1_NC_009737: hypothetical protein; GRA87_00345; phage(gi155042937)3.32e-10Showinfo_outline
4153100..53372PHAGE_Paenib_PG1_NC_021558: DNA packaging protein; GRA87_00350; phage(gi514231193)5.08e-26Showinfo_outline
4253369..53668PHAGE_Paenib_PG1_NC_021558: head-tail adaptor; GRA87_00355; phage(gi514231194)1.19e-14Showinfo_outline
4353661..54017PHAGE_Strept_PH10_NC_012756: hypothetical protein; GRA87_00360; phage(gi238821357)2.15e-27Showinfo_outline
4454014..54343PHAGE_Bacill_1_NC_009737: putative aminopeptidase; GRA87_00365; phage(gi155042942)2.45e-32Showinfo_outline
4554344..54913PHAGE_Geobac_GBSV1_NC_008376: major tail protein; GRA87_00370; phage(gi115334636)3.02e-57Showinfo_outline
4654918..55280PHAGE_Geobac_GBSV1_NC_008376: hypothetical protein; GRA87_00375; phage(gi115334637)2.91e-35Showinfo_outline
4755522..59457PHAGE_Lactoc_bIL285_NC_002666: tail protein; GRA87_00380; phage(gi13095732)7.05e-39Showinfo_outline
4859454..60263PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; GRA87_00385; phage(gi100019)3.29e-29Showinfo_outline
4964032..64044attR0.0Showinfo_outline
5069421..69432attR0.0Showinfo_outline

Region 2, total 34 CDS

#CDS PositionBLAST HitE-ValueSequence
1169786..169797attL0.0Showinfo_outline
2169924..170721PHAGE_Bacill_PBS1_NC_043027: hypothetical protein; GRA87_00945; phage(gi100205)9.54e-45Showinfo_outline
3170818..170835attL0.0Showinfo_outline
4170985..172322NAD(P)-binding protein; GRA87_009500.0Showinfo_outline
5complement(172630..173388)PHAGE_Bacill_Mgbh1_NC_041879: terminase large subunit; GRA87_00955; phage(gi100070)3.16e-106Showinfo_outline
6complement(173620..174399)PHAGE_Paenib_Tadhana_NC_048691: tail tip protein; GRA87_00960; phage(gi100054)9.42e-60Showinfo_outline
7complement(174414..174986)PHAGE_Bacill_BMBtpLA_NC_028748: hypothetical protein; GRA87_00965; phage(gi971482529)4.99e-104Showinfo_outline
8complement(175081..175203)Fur-regulated basic protein FbpA; GRA87_009700.0Showinfo_outline
9complement(175206..175835)PHAGE_Bacill_phi4B1_NC_028886: hypothetical protein; GRA87_00975; phage(gi971821278)2.17e-32Showinfo_outline
10complement(176020..176850)PHAGE_Bacill_Pony_NC_022770: replication initiator protein; GRA87_00980; phage(gi568191570)6.10e-46Showinfo_outline
11complement(176786..177544)PHAGE_Staphy_96_NC_007057: ORF015; GRA87_00985; phage(gi66395900)9.51e-43Showinfo_outline
12complement(177541..177813)PHAGE_Bacill_phi4B1_NC_028886: hypothetical protein; GRA87_00990; phage(gi971821281)1.82e-48Showinfo_outline
13complement(177827..178498)PHAGE_Bacill_phi4B1_NC_028886: Erf family protein; GRA87_00995; phage(gi971821254)5.18e-32Showinfo_outline
14complement(178495..178977)PHAGE_Deep_s_D6E_NC_019544: gp157-like protein; GRA87_01000; phage(gi423262358)3.21e-45Showinfo_outline
15complement(178992..179255)PHAGE_Bacill_phi4B1_NC_028886: hypothetical protein; GRA87_01005; phage(gi971821255)4.06e-16Showinfo_outline
16complement(179227..179544)PHAGE_Bacill_phi4J1_NC_029008: hypothetical protein; GRA87_01010; phage(gi971821611)9.72e-05Showinfo_outline
17complement(179534..179719)hypothetical protein; GRA87_010150.0Showinfo_outline
18complement(179695..179961)PHAGE_Bacill_PfEFR_4_NC_048641: holin; GRA87_01020; phage(gi100034)2.28e-33Showinfo_outline
19complement(180070..180798)PHAGE_Bacill_BMBtpLA_NC_028748: hypothetical protein; GRA87_01025; phage(gi971482519)2.48e-64Showinfo_outline
20complement(180795..180995)PHAGE_Bacter_Rani_NC_029084: DNA-binding protein; GRA87_01030; phage(gi985759363)2.53e-15Showinfo_outline
21181271..181684PHAGE_Bacill_phi4B1_NC_028886: DNA-binding helix-turn-helix protein; GRA87_01035; phage(gi971821252)4.43e-34Showinfo_outline
22181707..182135PHAGE_Anoxyb_A403_NC_048701: tail fiber protein; GRA87_01040; phage(gi100052)7.15e-27Showinfo_outline
23182360..182830PHAGE_Bacill_phi4B1_NC_028886: site-specific recombinase; GRA87_01045; phage(gi971821285)4.17e-37Showinfo_outline
24182875..183504PHAGE_Bacill_phi4B1_NC_028886: site-specific recombinase; GRA87_01050; phage(gi971821285)7.56e-34Showinfo_outline
25183541..183558attR0.0Showinfo_outline
26complement(183619..184953)type I glutamate--ammonia ligase; GRA87_010550.0Showinfo_outline
27complement(185002..185391)transcriptional repressor GlnR; GRA87_010600.0Showinfo_outline
28complement(185567..186838)hypothetical protein; GRA87_010650.0Showinfo_outline
29complement(186831..188101)GTPase HflX; GRA87_010700.0Showinfo_outline
30188194..188817trimeric intracellular cation channel family protein; GRA87_010750.0Showinfo_outline
31188917..189183hypothetical protein; GRA87_010800.0Showinfo_outline
32complement(189086..190042)PHAGE_Acidia_virus_NC_029316: AAA+ ATPase; GRA87_01085; phage(gi1002166819)6.54e-05Showinfo_outline
33190156..191121PHAGE_Bacill_vB_BtS_BMBtp14_NC_048640: hypothetical protein; GRA87_01090; phage(gi100010)1.89e-49Showinfo_outline
34200125..200136attR0.0Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 458324 bps
Phages: 2
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download