Submission Results

Sequence Name: Sulfolobus virus 1 complete genome (provirus).

GenBank Accession Number: X07234.1

GenInfo (GI) Number: 46703

Download Results: X07234.1.PHASTER.zip

gi|00000000|ref|X07234.1| Sulfolobus virus 1 complete genome (provirus). 15465, gc%: 39.70%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
115.2Kbintact14531191-15465 info_outlinePHAGE_Sulfol_1_NC_001338(31)39.63%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|X07234.1| Sulfolobus virus 1 complete genome (provirus). 15465, gc%: 39.70%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 33 CDS

#CDS PositionBLAST HitE-ValueSequence
1191..946PHAGE_Sulfol_1_NC_001338: NTP-binding motif containing protein; -; phage(gi9625520)0.0Showinfo_outline
2610..621attL0.0Showinfo_outline
3complement(961..1968)PHAGE_Sulfol_1_NC_001338: integrase; -; phage(gi9625521)0.0Showinfo_outline
4complement(1983..2147)PHAGE_Sulfol_1_NC_001338: hypothetical protein; -; phage(gi9625522)5.57e-32Showinfo_outline
5complement(2120..2398)PHAGE_Sulfol_1_NC_001338: hypothetical protein; -; phage(gi9625523)3.25e-54Showinfo_outline
6complement(2395..3129)PHAGE_Sulfol_1_NC_001338: hypothetical protein; -; phage(gi9625524)0.0Showinfo_outline
7complement(3039..3575)PHAGE_Sulfol_1_NC_001338: similar to Staphopain; -; phage(gi9625525)7.50e-125Showinfo_outline
8complement(3581..3862)PHAGE_Sulfol_1_NC_001338: hypothetical protein; -; phage(gi9625526)1.20e-61Showinfo_outline
9complement(3870..4025)PHAGE_Sulfol_1_NC_001338: hypothetical protein; -; phage(gi9625527)7.46e-28Showinfo_outline
10complement(4026..4316)PHAGE_Sulfol_1_NC_001338: hypothetical protein; -; phage(gi9625528)5.37e-65Showinfo_outline
11complement(4318..4509)PHAGE_Sulfol_1_NC_001338: helix-turn-helix protein; -; phage(gi9625529)2.21e-37Showinfo_outline
12complement(4622..4960)PHAGE_Sulfol_1_NC_001338: hypothetical protein; -; phage(gi9625530)1.65e-77Showinfo_outline
135177..5326PHAGE_Sulfol_1_NC_001338: hypothetical protein; -; phage(gi9625531)4.07e-27Showinfo_outline
145797..6099PHAGE_Sulfol_1_NC_001338: hypothetical protein; -; phage(gi9625532)2.27e-65Showinfo_outline
156115..6513PHAGE_Sulfol_1_NC_001338: hypothetical protein; -; phage(gi9625533)1.55e-92Showinfo_outline
166510..6752PHAGE_Sulfol_1_NC_001338: ribbon-helix-helix domain containing protein; -; phage(gi9625534)6.21e-51Showinfo_outline
176745..6984PHAGE_Sulfol_1_NC_001338: hypothetical protein; -; phage(gi9625535)1.58e-52Showinfo_outline
186988..7125PHAGE_Sulfol_1_NC_001338: hypothetical protein; -; phage(gi9625536)2.55e-26Showinfo_outline
197122..7430PHAGE_Sulfol_1_NC_001338: hypothetical protein; -; phage(gi9625537)8.08e-68Showinfo_outline
207427..7816PHAGE_Sulfol_1_NC_001338: hypothetical protein; -; phage(gi9625538)8.26e-91Showinfo_outline
217852..8727PHAGE_Sulfol_1_NC_001338: hypothetical protein; -; phage(gi9625539)0.0Showinfo_outline
228766..9140PHAGE_Sulfol_1_NC_001338: hypothetical protein; -; phage(gi9625540)2.73e-83Showinfo_outline
239174..11552PHAGE_Sulfol_1_NC_001338: hypothetical protein; -; phage(gi9625541)0.0Showinfo_outline
2411549..11785PHAGE_Sulfol_1_NC_001338: hypothetical protein; -; phage(gi9625542)4.31e-46Showinfo_outline
2511775..12275PHAGE_Sulfol_1_NC_001338: hypothetical protein; -; phage(gi9625543)7.20e-107Showinfo_outline
2613012..13290PHAGE_Sulfol_1_NC_001338: structural protein VP3; -; phage(gi9625544)7.18e-56Showinfo_outline
2713292..13516PHAGE_Sulfol_1_NC_001338: VP2 protein; -; phage(gi9625545)6.84e-45Showinfo_outline
2813552..13800PHAGE_Sulfol_1_NC_001338: hypothetical protein; -; phage(gi9625546)1.05e-50Showinfo_outline
2913692..13703attR0.0Showinfo_outline
3013797..14051PHAGE_Sulfol_1_NC_001338: hypothetical protein; -; phage(gi9625547)1.10e-53Showinfo_outline
3114087..14920PHAGE_Sulfol_1_NC_001338: hypothetical protein; -; phage(gi9625548)0.0Showinfo_outline
3214922..15230PHAGE_Sulfol_1_NC_001338: hypothetical protein; -; phage(gi9625549)7.75e-69Showinfo_outline
3315223..15465PHAGE_Sulfol_1_NC_001338: similar to DNA gyrase-like protein; -; phage(gi9625550)6.03e-51Showinfo_outline
Sulfolobus virus 1 complete genome (provirus)
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

Viewer Options
Length: 15465 bps
Phages: 1
arrow_upwardarrow_upwardarrow_upward
Click on a region in the genome above to show details here.
Viewer Options
Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download