Submission Results

Sequence Name: Not Available

GenBank Accession Number: X97918

GenInfo (GI) Number: 0000000000

Download Results: X97918.PHASTER.zip

gi|00000000|ref|X97918.2| Bacteriophage SPP1 complete nucleotide sequence. 44010, gc%: 43.72%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
10Kbintact14497307-274 info_outlinePHAGE_Bacill_SPP1_NC_004166(97)-59615.62%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|X97918.2| Bacteriophage SPP1 complete nucleotide sequence. 44010, gc%: 43.72%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 97 CDS

#CDS PositionBLAST HitE-ValueSequence
1307..1575PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855048)0.0Showinfo_outline
2complement(429..725)PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855049)1.98e-64Showinfo_outline
3complement(804..1088)PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855050)4.47e-63Showinfo_outline
41566..1781PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855051)1.04e-45Showinfo_outline
5complement(1668..1892)PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855053)4.69e-46Showinfo_outline
61781..2038PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855052)3.53e-59Showinfo_outline
72063..2332PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855054)2.89e-59Showinfo_outline
82334..3845PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855055)0.0Showinfo_outline
93802..4728PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855056)0.0Showinfo_outline
10complement(4339..4572)PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855057)1.33e-49Showinfo_outline
11complement(4657..4947)PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855058)1.79e-60Showinfo_outline
12complement(4961..5284)PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855060)1.38e-67Showinfo_outline
135064..6212PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855059)0.0Showinfo_outline
14complement(5295..5618)PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855061)3.00e-68Showinfo_outline
156214..6552PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855062)1.71e-76Showinfo_outline
16complement(6525..6734)PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855063)2.53e-42Showinfo_outline
17complement(6877..7314)PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855065)3.99e-94Showinfo_outline
186914..7558PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855064)1.02e-148Showinfo_outline
19complement(7363..7704)PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855067)1.54e-76Showinfo_outline
207573..7767PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855066)3.29e-39Showinfo_outline
217800..8774PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855068)0.0Showinfo_outline
228825..9001PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855069)4.19e-31Showinfo_outline
239012..9320PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855070)6.28e-72Showinfo_outline
249322..9651PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855071)4.94e-75Showinfo_outline
259632..10066PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855072)5.27e-103Showinfo_outline
2610063..10467PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855073)1.10e-96Showinfo_outline
2710481..11014PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855074)1.14e-125Showinfo_outline
2810481..11276PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi111146925)0.0Showinfo_outline
29complement(10640..11194)PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855077)7.59e-129Showinfo_outline
3011342..11881PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855078)4.09e-127Showinfo_outline
3111342..12252PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi111146926)0.0Showinfo_outline
3212264..15362PHAGE_Bacill_SPP1_NC_004166: structural protein; -; phage(gi111146922)0.0Showinfo_outline
33complement(14579..15034)PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855083)5.42e-102Showinfo_outline
3415359..16120PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855084)0.0Showinfo_outline
35complement(15424..15648)PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855085)5.79e-45Showinfo_outline
3616125..19460PHAGE_Bacill_SPP1_NC_004166: structural protein; -; phage(gi111146923)0.0Showinfo_outline
37complement(17111..17419)PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855089)1.49e-64Showinfo_outline
3819473..19913PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855090)1.51e-103Showinfo_outline
39complement(19733..20029)PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855092)8.66e-62Showinfo_outline
4019929..20093PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855091)5.08e-31Showinfo_outline
4120086..20241PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855093)3.20e-30Showinfo_outline
4220234..20464PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855094)1.85e-48Showinfo_outline
4320571..20822PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi111146924)2.90e-52Showinfo_outline
4420842..21657PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855096)0.0Showinfo_outline
45complement(21357..21710)PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855098)5.55e-76Showinfo_outline
4621659..21907PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855097)1.01e-53Showinfo_outline
4722274..22828PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855099)2.00e-131Showinfo_outline
4822831..23118PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855100)1.97e-64Showinfo_outline
4923066..23368PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855101)1.50e-69Showinfo_outline
5023355..23672PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855102)7.29e-74Showinfo_outline
5123672..23836PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855103)2.51e-31Showinfo_outline
5223857..24027PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855104)3.09e-34Showinfo_outline
5324207..24491PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855105)2.43e-63Showinfo_outline
5424569..24949PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855106)5.69e-87Showinfo_outline
5524962..25279PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855107)3.01e-70Showinfo_outline
5625276..27786PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855108)0.0Showinfo_outline
57complement(25285..25758)PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855109)5.81e-111Showinfo_outline
58complement(26208..26603)PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855110)2.63e-87Showinfo_outline
59complement(26607..26993)PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855111)2.42e-84Showinfo_outline
60complement(27006..27419)PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855112)2.43e-92Showinfo_outline
6128194..29993PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855113)0.0Showinfo_outline
6230009..30227PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855114)1.12e-47Showinfo_outline
6330362..30520PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855115)2.58e-31Showinfo_outline
6430532..31467PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855116)0.0Showinfo_outline
6531464..31637PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855117)3.89e-36Showinfo_outline
66complement(31611..31904)PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855120)6.52e-60Showinfo_outline
6731639..31893PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855118)5.60e-55Showinfo_outline
6831895..32185PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855119)6.37e-66Showinfo_outline
6932175..33038PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855121)0.0Showinfo_outline
70complement(33015..33485)PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855123)2.19e-106Showinfo_outline
7133031..33510PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855122)1.08e-113Showinfo_outline
7235398..35571PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855124)7.29e-35Showinfo_outline
7335578..36348PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855125)0.0Showinfo_outline
7436345..36725PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855126)7.62e-89Showinfo_outline
7536722..38050PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855127)0.0Showinfo_outline
7637148..38050PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855127)0.0Showinfo_outline
77complement(37294..37569)PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855129)7.88e-57Showinfo_outline
78complement(37998..38324)PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855131)1.49e-73Showinfo_outline
7938040..38567PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855130)2.29e-128Showinfo_outline
8038564..38959PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855132)2.90e-88Showinfo_outline
8138962..39132PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855133)5.32e-34Showinfo_outline
8239129..39425PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855134)5.19e-67Showinfo_outline
8339429..39782PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855135)8.49e-75Showinfo_outline
8439775..40293PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855136)3.94e-123Showinfo_outline
8540296..40484PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855137)3.91e-39Showinfo_outline
8640593..40895PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855138)3.11e-68Showinfo_outline
8740895..41206PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855139)5.59e-69Showinfo_outline
8841301..41660PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855140)2.65e-83Showinfo_outline
8941642..42010PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855141)8.46e-87Showinfo_outline
9042080..42244PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855142)3.75e-31Showinfo_outline
9142241..42414PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855143)9.26e-35Showinfo_outline
9242430..42612PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855144)1.07e-36Showinfo_outline
9342609..42764PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855145)2.48e-29Showinfo_outline
9443173..43415PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855146)9.54e-53Showinfo_outline
9543399..43605PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855147)5.50e-44Showinfo_outline
9643878..422PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855046)5.34e-134Showinfo_outline
97complement(43979..274)PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; -; phage(gi22855047)1.92e-64Showinfo_outline
Bacteriophage SPP1 complete nucleotide sequence
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

Viewer Options
Length: 44010 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download