Submission Results

Sequence Name: Lactobacillus bacteriophage phig1e complete genomic DNA.

GenBank Accession Number: X98106.1

GenInfo (GI) Number: 1926320

Download Results: X98106.1.PHASTER.zip

gi|1926320|ref|X98106.1| Lactobacillus bacteriophage phig1e complete genomic DNA. .42259, gc%: 43.06%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
141.8Kbintact15049167-41968 info_outlinePHAGE_Lactob_phig1e_NC_004305(49)43.13%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|1926320|ref|X98106.1| Lactobacillus bacteriophage phig1e complete genomic DNA. [asmbl_id: NC_000000].42259, gc%: 43.06%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 53 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(167..316)PHAGE_Lactob_phig1e_NC_004305: hypothetical protein phig1ep03; -; phage(gi23455779)2e-20Showinfo_outline
2complement(313..579)PHAGE_Lactob_phig1e_NC_004305: repressor; -; phage(gi23455778)1e-43Showinfo_outline
3746..1144PHAGE_Lactob_phig1e_NC_004305: repressor; -; phage(gi23455773)4e-72Showinfo_outline
41153..1584PHAGE_Lactob_phig1e_NC_004305: hypothetical protein phig1ep06; -; phage(gi23455774)2e-81Showinfo_outline
51652..2566PHAGE_Lactob_phig1e_NC_004305: hypothetical protein phig1ep07; -; phage(gi23455775)6e-172Showinfo_outline
62594..2664tRNA0.0Showinfo_outline
72706..2717attL0.0Showinfo_outline
82743..2943PHAGE_Lactob_phig1e_NC_004305: exicionase; -; phage(gi23455776)2e-33Showinfo_outline
92948..4123PHAGE_Lactob_phig1e_NC_004305: integrase; -; phage(gi23455777)0.0Showinfo_outline
10complement(4579..5277)PHAGE_Lactob_phig1e_NC_004305: hypothetical protein phig1ep10; -; phage(gi23455821)9e-137Showinfo_outline
11complement(5281..5859)PHAGE_Lactob_phig1e_NC_004305: hypothetical protein phig1ep11; -; phage(gi23455820)9e-105Showinfo_outline
12complement(5881..6327)PHAGE_Lactob_phig1e_NC_004305: hypothetical protein phig1ep12; -; phage(gi23455819)6e-81Showinfo_outline
13complement(6491..7018)PHAGE_Lactob_phig1e_NC_004305: hypothetical protein phig1ep13; -; phage(gi23455818)2e-93Showinfo_outline
14complement(8479..8907)PHAGE_Lactob_phig1e_NC_004305: holin; -; phage(gi23455817)1e-71Showinfo_outline
15complement(9302..9454)PHAGE_Lactob_phig1e_NC_004305: hypothetical protein phig1ep17; -; phage(gi23455816)2e-23Showinfo_outline
16complement(9732..10517)PHAGE_Lactob_phig1e_NC_004305: minor capsid protein; -; phage(gi23455815)2e-148Showinfo_outline
17complement(10532..12340)PHAGE_Lactob_phig1e_NC_004305: minor capsid protein; -; phage(gi23455814)0.0Showinfo_outline
18complement(12364..13212)PHAGE_Lactob_phig1e_NC_004305: hypothetical protein phig1ep20; -; phage(gi23455813)2e-159Showinfo_outline
19complement(13476..14594)PHAGE_Lactob_phig1e_NC_004305: hypothetical protein phig1ep22; -; phage(gi23455812)0.0Showinfo_outline
20complement(15416..20242)PHAGE_Lactob_phig1e_NC_004305: minor capsid protein; -; phage(gi23455811)0.0Showinfo_outline
21complement(20273..20869)PHAGE_Lactob_phig1e_NC_004305: hypothetical protein phig1ep25; -; phage(gi23455810)3e-110Showinfo_outline
22complement(20875..21306)PHAGE_Lactob_phig1e_NC_004305: minor capsid protein; -; phage(gi23455809)5e-79Showinfo_outline
23complement(21356..21892)PHAGE_Lactob_phig1e_NC_004305: minor capsid protein; -; phage(gi23455808)4e-99Showinfo_outline
24complement(21926..22330)PHAGE_Lactob_phig1e_NC_004305: minor capsid protein; -; phage(gi23455807)2e-72Showinfo_outline
25complement(22330..22680)PHAGE_Lactob_phig1e_NC_004305: minor capsid protein; -; phage(gi23455806)7e-65Showinfo_outline
26complement(22680..23033)PHAGE_Lactob_phig1e_NC_004305: minor capsid protein; -; phage(gi23455805)2e-64Showinfo_outline
27complement(23482..24537)PHAGE_Lactob_phig1e_NC_004305: minor capsid protein; -; phage(gi23455804)0.0Showinfo_outline
28complement(24554..25168)PHAGE_Lactob_phig1e_NC_004305: minor capsid protein; -; phage(gi23455803)1e-111Showinfo_outline
29complement(25264..25518)PHAGE_Lactob_phig1e_NC_004305: hypothetical protein phig1ep34; -; phage(gi23455802)1e-41Showinfo_outline
30complement(25719..26762)PHAGE_Lactob_phig1e_NC_004305: minor capsid protein; -; phage(gi23455801)0.0Showinfo_outline
31complement(26759..28285)PHAGE_Lactob_phig1e_NC_004305: minor capsid protein; -; phage(gi23455800)0.0Showinfo_outline
32complement(28294..29637)PHAGE_Lactob_phig1e_NC_004305: putative terminase large subunit; -; phage(gi23455799)0.0Showinfo_outline
33complement(29618..30136)PHAGE_Lactob_phig1e_NC_004305: putative terminase small subunit; -; phage(gi23455798)5e-92Showinfo_outline
34complement(31569..31640)tRNA0.0Showinfo_outline
35complement(32077..32520)PHAGE_Lactob_phig1e_NC_004305: hypothetical protein phig1ep41; -; phage(gi23455797)4e-82Showinfo_outline
36complement(32599..32886)PHAGE_Lactob_phig1e_NC_004305: hypothetical protein phig1ep42; -; phage(gi23455796)2e-51Showinfo_outline
37complement(32898..33116)PHAGE_Lactob_phig1e_NC_004305: hypothetical protein phig1ep43; -; phage(gi23455795)2e-39Showinfo_outline
38complement(33146..33367)PHAGE_Lactob_phig1e_NC_004305: hypothetical protein phig1ep44; -; phage(gi23455794)1e-38Showinfo_outline
39complement(33364..33711)PHAGE_Lactob_phig1e_NC_004305: possible sensor protein; -; phage(gi23455793)2e-62Showinfo_outline
40complement(33727..33885)PHAGE_Lactob_phig1e_NC_004305: hypothetical protein phig1ep46; -; phage(gi23455792)2e-23Showinfo_outline
41complement(33914..34069)PHAGE_Lactob_phig1e_NC_004305: hypothetical protein phig1ep47; -; phage(gi23455791)2e-22Showinfo_outline
42complement(34137..34622)PHAGE_Lactob_phig1e_NC_004305: putative methyltransferase; -; phage(gi23455790)8e-96Showinfo_outline
43complement(34619..34750)PHAGE_Lactob_phig1e_NC_004305: hypothetical protein phig1ep49; -; phage(gi23455789)2e-19Showinfo_outline
44complement(34753..34983)PHAGE_Lactob_phig1e_NC_004305: hypothetical protein phig1ep50; -; phage(gi23455788)1e-41Showinfo_outline
45complement(35354..35854)PHAGE_Lactob_phig1e_NC_004305: hypothetical protein phig1ep52; -; phage(gi23455787)3e-95Showinfo_outline
46complement(35986..36828)PHAGE_Lactob_phig1e_NC_004305: zinc finger protein; -; phage(gi23455786)2e-161Showinfo_outline
4736825..36836attR0.0Showinfo_outline
48complement(37600..38328)PHAGE_Lactob_phig1e_NC_004305: hypothetical protein phig1ep55; -; phage(gi23455785)1e-141Showinfo_outline
49complement(38387..39061)PHAGE_Lactob_phig1e_NC_004305: hypothetical protein phig1ep56; -; phage(gi23455784)2e-129Showinfo_outline
50complement(39063..39725)PHAGE_Lactob_phig1e_NC_004305: hypothetical protein phig1ep57; -; phage(gi23455783)1e-124Showinfo_outline
51complement(40643..40996)PHAGE_Lactob_phig1e_NC_004305: hypothetical protein phig1ep60; -; phage(gi23455782)3e-64Showinfo_outline
52complement(41002..41556)PHAGE_Lactob_phig1e_NC_004305: hypothetical protein phig1ep61; -; phage(gi23455781)3e-101Showinfo_outline
5341666..41968PHAGE_Lactob_phig1e_NC_004305: hypothetical protein phig1ep62; -; phage(gi23455772)6e-51Showinfo_outline
Lactobacillus bacteriophage phig1e complete genomic DNA.
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 42259 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download