Submission Results

Sequence Name: Not Available

GenBank Accession Number: z18946

GenInfo (GI) Number: 0000000000

Download Results: z18946.PHASTER.zip

gi|00000000|ref|Z18946.1| Mycobacterium phage L5 complete genome. 52297, gc%: 62.26%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
151.3Kbintact15090198-51580 info_outlinePHAGE_Mycoba_L5_NC_001335(90)62.27%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|Z18946.1| Mycobacterium phage L5 complete genome. 52297, gc%: 62.26%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 95 CDS

#CDS PositionBLAST HitE-ValueSequence
1198..211attL0.0Showinfo_outline
2411..1100PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_1; phage(gi9625434)5.52e-172Showinfo_outline
31305..2084PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_2; phage(gi9625435)0.0Showinfo_outline
42084..2335PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_3; phage(gi9625436)3.25e-53Showinfo_outline
52332..2628PHAGE_Mycoba_L5_NC_001335: HNH endonuclease; PBI_L5_4; phage(gi9625437)2.84e-66Showinfo_outline
62665..3132PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_5; phage(gi9625438)2.10e-110Showinfo_outline
73209..4150PHAGE_Mycoba_L5_NC_001335: minor tail subunit; PBI_L5_6; phage(gi9625439)0.0Showinfo_outline
84200..4271tRNA0.0Showinfo_outline
94350..4421tRNA0.0Showinfo_outline
104479..4550tRNA0.0Showinfo_outline
114581..5459PHAGE_Mycoba_L5_NC_001335: Lysin A; PBI_L5_10; phage(gi9625440)0.0Showinfo_outline
125456..5851PHAGE_Mycoba_L5_NC_001335: Holin; PBI_L5_11; phage(gi9625441)1.24e-85Showinfo_outline
135848..6612PHAGE_Mycoba_L5_NC_001335: Lysin B; PBI_L5_12; phage(gi9625442)0.0Showinfo_outline
146626..8407PHAGE_Mycoba_L5_NC_001335: Terminase; PBI_L5_13; phage(gi9625443)0.0Showinfo_outline
158404..9864PHAGE_Mycoba_L5_NC_001335: Portal; PBI_L5_14; phage(gi9625444)0.0Showinfo_outline
169861..10745PHAGE_Mycoba_L5_NC_001335: Capsid Maturation Protease; PBI_L5_15; phage(gi9625445)0.0Showinfo_outline
1710797..11318PHAGE_Mycoba_L5_NC_001335: Scaffolding; PBI_L5_16; phage(gi9625446)4.05e-121Showinfo_outline
1811351..12331PHAGE_Mycoba_L5_NC_001335: Major Capsid; PBI_L5_17; phage(gi9625447)0.0Showinfo_outline
1912382..12555PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_18; phage(gi9625448)1.04e-35Showinfo_outline
2012559..12936PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_19; phage(gi9625449)1.01e-85Showinfo_outline
2112933..13127PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_19.1; phage(gi576016391)2.64e-41Showinfo_outline
2213127..13495PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_20; phage(gi9625450)1.03e-87Showinfo_outline
2313495..13830PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_21; phage(gi9625451)3.57e-76Showinfo_outline
2413840..14259PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_22; phage(gi9625452)4.31e-97Showinfo_outline
2514277..14873PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_23; phage(gi9625453)3.22e-143Showinfo_outline
2614987..15804PHAGE_Mycoba_L5_NC_001335: Tail assembly chaperone; PBI_L5_25; phage(gi576016392)0.0Showinfo_outline
2714987..15385PHAGE_Mycoba_L5_NC_001335: Tail assembly chaperone; PBI_L5_24; phage(gi9625454)2.40e-89Showinfo_outline
2815794..18307PHAGE_Mycoba_L5_NC_001335: Tapemeasure; PBI_L5_26; phage(gi9625456)0.0Showinfo_outline
2918333..19343PHAGE_Mycoba_L5_NC_001335: Minor tail protein; PBI_L5_27; phage(gi9625457)0.0Showinfo_outline
3019340..21130PHAGE_Mycoba_L5_NC_001335: Minor tail protein; PBI_L5_28; phage(gi9625458)0.0Showinfo_outline
3121148..21591PHAGE_Mycoba_L5_NC_001335: Minor tail subunit; PBI_L5_29; phage(gi9625459)5.24e-106Showinfo_outline
3221588..21893PHAGE_Mycoba_L5_NC_001335: Minor tail protein; PBI_L5_30; phage(gi9625460)3.86e-70Showinfo_outline
3321890..23536PHAGE_Mycoba_L5_NC_001335: Minor tail protein; PBI_L5_31; phage(gi9625461)0.0Showinfo_outline
3423536..24198PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_32; phage(gi9625462)1.74e-148Showinfo_outline
35complement(24254..25369)PHAGE_Mycoba_L5_NC_001335: Integrase (Y-int); PBI_L5_33; phage(gi9625463)0.0Showinfo_outline
3625777..26220PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_34.1; phage(gi576016393)1.16e-98Showinfo_outline
37complement(26329..26547)PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_35; phage(gi9625465)2.60e-46Showinfo_outline
38complement(26557..26727)PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_36; phage(gi9625466)3.16e-33Showinfo_outline
39complement(26747..27091)PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_37; phage(gi9625467)2.96e-78Showinfo_outline
40complement(27091..27243)PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_38; phage(gi9625468)1.69e-28Showinfo_outline
41complement(27240..27659)PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_39; phage(gi9625469)3.49e-99Showinfo_outline
42complement(27656..27769)PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_40; phage(gi9625470)6.72e-17Showinfo_outline
43complement(27770..28021)PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_41; phage(gi9625471)2.89e-57Showinfo_outline
44complement(28048..28266)PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_42; phage(gi9625472)3.60e-46Showinfo_outline
45complement(28266..28499)PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_43; phage(gi9625473)3.53e-48Showinfo_outline
46complement(28499..28678)PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_43.1; phage(gi576016394)1.10e-35Showinfo_outline
47complement(28689..30476)PHAGE_Mycoba_L5_NC_001335: DNA polymerase I; PBI_L5_44; phage(gi9625474)0.0Showinfo_outline
48complement(30486..30779)PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_45; phage(gi9625475)9.30e-67Showinfo_outline
49complement(30961..31389)PHAGE_Mycoba_L5_NC_001335: HTH DNA binding; PBI_L5_46; phage(gi9625476)2.31e-99Showinfo_outline
50complement(31386..31595)PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_47; phage(gi9625477)1.78e-44Showinfo_outline
51complement(31607..32338)PHAGE_Mycoba_L5_NC_001335: ThyX-like; PBI_L5_48; phage(gi9625478)1.26e-179Showinfo_outline
52complement(32457..32996)PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_49; phage(gi9625479)1.46e-128Showinfo_outline
53complement(32993..35041)PHAGE_Mycoba_L5_NC_001335: Ribonucleotide reductase; PBI_L5_50; phage(gi9625480)0.0Showinfo_outline
54complement(35042..35245)PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_51; phage(gi9625481)5.00e-43Showinfo_outline
55complement(35242..35427)PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_52; phage(gi9625482)7.50e-40Showinfo_outline
56complement(35411..36115)PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_53; phage(gi9625483)8.95e-175Showinfo_outline
57complement(36112..36264)PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_53.1; phage(gi576016395)2.41e-29Showinfo_outline
58complement(36268..37035)PHAGE_Mycoba_L5_NC_001335: phosphoesterase; PBI_L5_54; phage(gi9625484)0.0Showinfo_outline
59complement(37032..37502)PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_55; phage(gi9625485)5.40e-114Showinfo_outline
60complement(37499..37810)PHAGE_Mycoba_L5_NC_001335: NrdH-like; PBI_L5_56; phage(gi9625486)4.55e-71Showinfo_outline
61complement(37810..38268)PHAGE_Mycoba_L5_NC_001335: DNA primase; PBI_L5_57; phage(gi9625487)2.86e-110Showinfo_outline
62complement(38270..38662)PHAGE_Mycoba_L5_NC_001335: DNA primase; PBI_L5_58; phage(gi9625488)8.42e-93Showinfo_outline
63complement(38794..39288)PHAGE_Mycoba_L5_NC_001335: Endo VII; PBI_L5_59; phage(gi9625489)5.83e-121Showinfo_outline
64complement(39379..39522)PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_60; phage(gi9625490)1.45e-27Showinfo_outline
65complement(39519..39896)PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_61; phage(gi9625491)5.07e-87Showinfo_outline
66complement(39896..40051)PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_62; phage(gi9625492)4.04e-32Showinfo_outline
67complement(40048..40284)PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_63; phage(gi9625493)5.27e-51Showinfo_outline
68complement(40369..40755)PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_64; phage(gi9625494)1.44e-89Showinfo_outline
69complement(40787..41593)PHAGE_Mycoba_L5_NC_001335: DnaB-like helicase; PBI_L5_65; phage(gi9625495)0.0Showinfo_outline
70complement(41580..42203)PHAGE_Mycoba_L5_NC_001335: Phosphoesterase; PBI_L5_66; phage(gi9625496)1.17e-147Showinfo_outline
71complement(42213..42344)PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_67; phage(gi9625497)5.63e-25Showinfo_outline
72complement(42341..42580)PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_68; phage(gi9625498)9.72e-53Showinfo_outline
73complement(42657..42962)PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_68.1; phage(gi576016396)1.88e-70Showinfo_outline
74complement(42970..43842)PHAGE_Mycoba_L5_NC_001335: RecB-like; PBI_L5_69; phage(gi9625499)0.0Showinfo_outline
75complement(43839..44276)PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_70; phage(gi9625500)2.54e-105Showinfo_outline
76complement(44331..44882)PHAGE_Mycoba_L5_NC_001335: Immunity repressor; PBI_L5_71; phage(gi9625501)2.82e-133Showinfo_outline
77complement(45180..45356)PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_72; phage(gi9625502)2.77e-35Showinfo_outline
78complement(45364..45621)PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_73; phage(gi9625503)2.74e-55Showinfo_outline
79complement(45666..45884)PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_74; phage(gi9625504)2.34e-49Showinfo_outline
80complement(45884..46015)PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_75; phage(gi9625505)1.11e-23Showinfo_outline
81complement(46015..46290)PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_76; phage(gi9625506)3.46e-62Showinfo_outline
82complement(46290..47048)PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_77; phage(gi9625507)0.0Showinfo_outline
83complement(47051..47188)PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_78; phage(gi9625508)6.55e-25Showinfo_outline
84complement(47199..47417)PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_79; phage(gi9625509)1.34e-46Showinfo_outline
85complement(47470..47748)PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_80; phage(gi9625510)1.18e-62Showinfo_outline
86complement(47780..48115)PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_81; phage(gi9625511)4.06e-80Showinfo_outline
87complement(48137..48517)PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_82; phage(gi9625512)2.20e-88Showinfo_outline
88complement(48514..48732)PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_83; phage(gi9625513)9.03e-47Showinfo_outline
89complement(48729..48929)PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_84; phage(gi9625514)8.23e-43Showinfo_outline
90complement(48937..49203)PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_85; phage(gi9625515)3.00e-59Showinfo_outline
91complement(49217..49483)PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_86; phage(gi9625516)3.25e-60Showinfo_outline
92complement(49493..49654)PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_87; phage(gi9625517)1.69e-32Showinfo_outline
93complement(49663..50382)PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_88; phage(gi9625518)8.13e-178Showinfo_outline
94complement(50786..51082)PHAGE_Mycoba_L5_NC_001335: Hypothetical Protein; PBI_L5_89; phage(gi576016397)5.27e-64Showinfo_outline
9551580..51593attR0.0Showinfo_outline
Mycobacterium phage L5 complete genome
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 52297 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download