Submission Results
Sequence Name: Not Available
GenBank Accession Number: 1185359383 open_in_new
GenInfo (GI) Number: 0000000000 open_in_new
Download Results: 1185359383.PHASTER.zip
gi|00000000|ref|NBOQ01000061.1| Klebsiella pneumoniae strain ARP-657 plasmid unnamed24 contig61, 55362, gc%: 42.05%
Download summary as .txt file: summary.txt file_download
Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.
| Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
|---|---|---|---|---|---|---|---|---|
| 1 | 10Kb | incomplete | 30 | 11 | 11559-21558 info_outline | PHAGE_Bacill_phiNIT1_NC_021856(1) | 42.95% | Show info_outline |
Region DNA
>1 11559-21558 TTACAATTGTGAAATTGAACGTGATACTTCTTCCGGGAAAAGTTGCTCAAGCAAAATTTCAGCTTTACTA CATGCTTCAGAAGATAACTTAGACGTGAATGCAATTTTAAACCCAACAGAAATTTCTTCATCAAGGACTT TGGAGGTAGAAATCCATGAAATCAATTCACGAATATCCATCACCAGTTCGTCATCTTTCAGATTGTTAAG TTCAAAAGCAACTTTTGCAAACATTCTTAAACATGAAGGTTTCAAATCAGGAAAATGAGCCTCAGCTGCA CAATACATAGCTTGTTCATCAGGTCGAATCATCGGCAATATTAAAAAACGCTTAATAAATGCAGAGTCTT GGGACTGTGATGAAGCGAAACGCATATCCTCTCCACTCATGTTAGTGTTAGCTGTACCAATAAAGCGGGT GTAGCGATTTGCATAAATCAACTCGCCACCTTCTTTACCGGTTGCCCACGGTTTACGCTCAAGCGGCATA TGAAGCTTAGCTGCCGTATCTGGGTTTATTTTATCTATCTCATCAAGAAGAATGATATGCCCATCACGAT AGCCTTGCACAAGGTCACTATAAACATACCGTGTATTTCCATTTTCTAGCGTTCTCATACCTTCAAGATC ATCAATCGATAACTCATTGTTGATTTGTTTGATGGTGATAGGCCAGTTCAGCATATGGCTGATATATAAT GCTAACTCCGTTTTACCAGATCCAGATTCTCCTTGCAGGCAGATGCCAGCAGTTACTTCATTATTTAAAA GTAACTTCACCATACGGCGTAGAGTGATCGGATTTGGACGATATTTACTGTTTAACGGAGCACGAAAAGG AGTAACTCTTTTGAAAATAGGTATAACGTCATTTTCTCCAAAACAGTCAACATTAAAGTGCTCGTTTGCA CGGACAATAATGTATTCCTCTTCATCTTGATATTCTATAGCCTTGGTTAACTCATGAGGTTCGAAATATT TAATTTCTAAGTCAGAGTTAACATTCAAAGTTAGAATTTTTGCATTGTTGTTAGCAGTAGTAGCGGGTGT CATATATAACTCCGTTGGATATTTATGAAATTAAAGGTTTTTGATAATGGCTTTCGAAGTGCTGAAAAGT AATCCGTAATCAAAACCGTATACATGAGATATTACCTTACATGCATCGGAATATAACCACTCAACATAAT CCACAGCTTCGGTTTTAAGAACATAAGAATCGGTATTCTGATCCAAAGTCCAGGCACCATTTTCACTTAG ATTTTCAAGGATAATCATTTGCTCATCGAAAATCTTTTTAAAGAGTTTCAATCTGTCAGCTATTGACCAT TTAATGATCAATGATCTCCTTGTATAACAATATCTATCATCTAAGAAATCTGACCATTTAATCGGGCCTA TAATAGGATGCGAAAATGTTAAGTTGTCAGTTTCTAAAGATTTAATAAGATCTTGCCTTGACTCTCTTGA ACGTATTGCAAGAAGAAGTCTTGACTTAATAAAATCAATAATTTCATCTGGGTCATATCCGAAGCGATGA CACACAATTTGAAATTGTTTAGTACAATACCAATCTAACTCCAATTTTAATTTCGGTGTTAGATATCGAA ACCCATTGGCATCAATTTTATAGACCATCGATTGGTCTATATGGTACTGAACGGTTACAAAAGATGACTC CATTATTTTATAGAAGAACGTACATATATGTTCATCTGTCCAAATGAAATCATCTAGCTCTTGATAATCA TGGTTCGGTACTTTGTTACCATGATCTTCAACGATTGAGTTTGATTCCACAGGTATATATACCTTTTCTT TAATTCCATCATCCTCAAAGAAGAATCTGAAACTAAGTTGGTTTTCATTCTCAATCTTTCTTAATTTACT ACTTAAATGCATGATAGGTTTCTCCATAGGAGAAACCCAAATGGGATTTCTCCCAATAGGGGTTAAAAAA TTATTAACGTGTTAAGAACCTTGAACCGCCGAAACCTTCAATAGGCTTAGGAGCTCGGTGAATCAATTTC TGGGCCTGGACTCTAACAACCGTCAATTCACCAGAGTGAACTTTATCAGTCACCAGACAACCAGTTATCA TCAGGTTATCGCCTCGAATAATCTCTTTAAACTCCTTATCATACAGGTCTTGAGGTATTTTCACTTGGAT CGATGAAACTACCATTTCTATTTTACCATTTCTTTCCATTTCCTGTTTGTTATCCAGTATTAGCATAATA GTGTCATATTCATTACGAACAATCACCTTATTAACCTCGCCGGAAACGCAAACAGTATTTATGTGATTTG TAAACATGTTAGGCCTCTTTTAAAAAATAAAAAGAGACCCAAAAGGAGTCTCTTTTTCTCCTTGTGGATG TATGATTAAACAAATTTTAGAAGATGATACCTTTTTATAAAGGACAACTTTTATAGTTGAGCTCCATGAA TAAGATAAGTATCAATTATAGCCAATGAAGTTCATAATAGTTGAGATTCCGAAATAGAGAATGGCAACAC AAGCAGCACCTTTCAGTACTCTTGATACCGTATTATCATATCCCTTTACAAAACTATTATTTTCTACAGC TTTAATTTCTTGAGCTTGATTTGTTTCCATAGCTGCTTTAGCTTTCATTTCATCATCTTTCAATGATGCT TCAAGTTTAAGCAGTCGTGGCATTAAATCTGCAACTACAAAATCAAAACCATTTACTTTGTGAATCATCA TCTCGTTAAACGATAAGTCATAGTATTTGTCTTGAAGCCCGAATTCACTCATCAAAGGCTTCAATTTACC ATAAAGGTCATTGAGGTCCTCATGACGAGATTCAACGGTCTCAACAAAGTGCTGACGTTTATAAAAAACA TGCACCTCATCAATAACCATATCAAGCCATTGACTTACTTTAACAGCACCCAGCTTGGTCAGTTTATCTT TACCGAAGTGAAGAGACTCTGAAGTAACAATGGAGCTGATATTCAACTCAACAAGCTTTTCATCAAGAGA TGATAAAAAAGCTTCGAGCGTTTTTTCACGTGGGATGTCGGGAAATTCTTCAAGAAGTTGTTCAGCCTCA TCGAGGTTGATCTCATTAATGAAGACATCACCAACATTCACGCTGTAAATTACAGAACGTTCACAACCAA CTAAATGCTTCAGTTTAGAACTTTCTTCAAGCGCCTTTAACTCAATTACACGGCTGACAGATTCTGTCAT ATACCAGATGTAACTCTTATCGTCATCGGTCCCTTTTTCTATTTTACAAATATCACTGCCAGTATTCGAT GGTGGAATTTCTTCACCATAAAACGCTTTGGAATAAGCCATCAAAATTGAATCTTTCTCAATTTTGTCAG CAGCCGGGCGTGATGGTTTAGCACTGGTGGCGGTTTTAGCACGTGTTGGGGTTTTAGCTTTGTGTTTAGC AGTAGTAGCAGTAGTCATTTTATATACCTTTAAGTTTAGAATTAAATCTGGAAAAACCATTTACGCAGTT TATTTAGAAATTGGCGAAAGCCGTCGTTTATCACCCTGAAGCAACAAACCGCCTGAGTTTATACTTTTCT GGCATTAGAAAGTCCGTAGAAAGTTACTTTTTGAAAGCAATTTAACTACGAGTTGTGGTAAGACAGATGT GAGTTATCGCACCAGCGCCATTCTTTTGGAAAGAGGCTCTGGTGTCGAAACTCAAAAATTGAGCTATCCA TTTATGGATATCTTAGAAGAGATAAAGGTATTAAACTAAAGCTATTAACAAATTTATACATCAACCATGA TTCATTGTAAACACATATCTTCACTTCCATCAATACATGGGTTTTCTTCCGACAATTCAACTACTTTCGG GAACGACTCCGTGATGAACGCTGATGGTTTCCCATGCCAGGTTATGTAAAGTTCAAGCTCTGCTCTTGTC ATACCAACAAAAAATAAACGTCGTTCCTCTTCTATACCTTCATCACCGATAACTTTTGGTGAGGGTATTT GATCATGGTTGCAGTTAATGATTAGTACTTTTTTCCATTCTAGCCCCTTGGAGCCATGGAGCGTGCAGAG ACATATGCCGCTTTGCTCTGTTTCACTAGATTCCTTCTTGTTACCCATGGTCATGCCAGCTGCAATATTT AGCATCTTAAGCCATCCATCTTTCATTGCCCAACGGTAACATGACATTAATGAAATCCGGGTTACTGACG GTTCACCTTTCGTATTGGACATCTTATACCCGGCCATTTCTAACCATTCTCTGATTTTTTTAAAACGGTT TTCAATTTCTTCTTTGACTCGTGTATCAGTCATCATCGGTGCCATGTGCTTGTGTAGGGTTTTGGTAAGG ACTGATGCATCAGGAGGTAAATCAGTTTGTTGAAAAGTAACTTTTTGGGAACTCATATGCTTCCACACTG TGTCCAAAACTTGTTCATCCTCATTGAGGAAAGATAGAACTCGTTTCATCAGACCGATGTTACCTGGCTG TCGGAAAAAGGAGAACAGATGGAGAATGTTACTTGGCTCTAATCCCTCCCAGAAGGATTTTCCCCCTATC CTCGTAACCGGAACTTCAAGATAACTTTCCATCTTGTCGAGTGTCGTGTTGTTTCGGCTTAAAATCGCCC AATCATGAGGGTTTTTCTCCACCAGCTCCTTGATCACATCAAATTGGTCGTCTGCCTTATCCGATCTTAT AAAAGTTACTTTTCCTTTATCCCCATTTCTGCCTGACACGAGACTCTTTTCATAGCGGGCTTTGTTCTTT CTGATCACTGTATCAGCAAATTTAAGGATCAATGGTGCACACCTGAAACATTTGGTCAGGTGAAAAACGT TAGGATTATATGCTTTATCAAACTGACGAAAGATCTTAACTCCACCTGCATCTCTGAAACTGTATATTGT CTGGTCATCATCGCCTACGATTGTGGTGTTGATGCCCCTCTTTGCGTGCTCAGATATCCAGGTGAATTGA ATACCATCGGTGTCCTGTACTTCATCAACAATCAGATGAGTAATACTTAAAGGCCTCATCTTATCGGCAC TCAACATGCCCACTACATACTTTGAAAGTGAGTTAAAATCTGCAACATTATCCTTTTTGCAAAAGCTCAT GTACTCGTTGTAGAACGCCACCTGGTCGCGTGTATATTTAATCCTGATAATGTCCGGGTTAAGCTCCCGG CCAATGCCGTCGATGAATGGCATTATGTCGTTCACACTTTCATGGTAGTTAAGATGTTTTTGTACCCGTG ATACCATCGCCATTTGTTTGTGTCCGATTAGAAGCCCTCCTTTCCAACCGGTCTGGTTTACCATTTTTTT TATAAAACCGTGAAAGGTATCGACCTCTATACGGTTGAGAAACCTCGGCTCTATCATTTTCTGGAGGCTA TTTTTTAAAGAGTCTGTGGCCGCACGGGTAAAGGTTACCAGGGATACTCGGGCCAATGGATGACGTTGAA AAATGGCTTTTGTTCCCTCCTTCATGGTGAAAGATTTGCCACTCCCCGGACAGGCAATGACCATCGTGTT TTTATCCATATTTTGTATAACACGCTCTTGTTCTTCTGTACTCGATGACATCTTAGCTCCTTCCTGTTCC GGCATAAATCATGTCACATTCAGGAAAGAATTTTCTGAAATAGAGGCTGTTTTTCGTTTTTTCTTCAGTA TTTTGTATCATTGACTGCTCCCCGCCCAGAATGTACTGCACCTTTACTCAGTTGGAGTCCAACTTTTGGG ATGCAGTTCAAAACAGGGCGAGGATTCCAACCCGCACGGGACGAGATTTCTAGGGAACTTAACTGACAAA AGCGCCTTTAAAAGCACTCTTAAGCGTGCTATAATTGAGACTCTGAACAGGAGGTTTTTTTATGGCATTT CAGGTACTAACCACTACTGCAGCAAGCATCACAGAGCTTAAACGTGATCCTATGGGCACTTTCAATGCAG GAGAAGGTGCCCCGGTAGCCATACTGAATCGCAACGAACCCGCTTTTTACTGTGTACCGCCTGCTCTGTA TGCTCAACTGATGGAGCTTCTTGAAGATCAGGAGTTGGGTCGTATTGCTGATGAGCGAATTGGTGAGGCG GTAATCGAGGTCAGTCTAGATGACTTATAAGCTGGCCTTTAATGAATCAGCTCTGAAAGAATGGAAAAAA TTGGGCCATACCATTCGGGAACAATTCAAAAAGAAGCTCGCTGAGCGCCTGTTGAACCCACGGGTGCCCG CATCGCAACTACATGGACGCAAAGACCAATACAAAATAAAGCTCCGTGGCGCAGGCTACCGACTGGTTTA CAGTGTCAACGATGATGTTGTGACGGTCACCGTAATTGGCGTCGGTAAACGTGAGAATGATGATATTTAC CATTTAACCAAACACAGAAATTAAGAGCGCATTCGTTCAGGTATTTAGTCACAAAAACAATCTGTACATG TAATAAATAGGCAGAATTCCGACTTCTGTTTATTTCCTGCACCCGTTGACTCCGTGATGTATATATGGTT ATTTATACAGGCTACATCAATACACACTGAATGCAAAATGCTAATCCAGAAAGCGTATAAATACAGACTC AACCCGACAGATGCACAGGCGCAACGACTGCGTCAGATGTGCGGCTGCGCCCGTTTTGTCTGGAATTACG CCCTGGCAGAGACGCAGCGTATTCTTGAGGCCGGACAAAAACTCCCTTCCGCCTTTGAGCTGAATAAAAT GCTGACAGGATGGAAGAAATTACCTGAGCTGGCGTTTTTATCTGATGCCTACACCGACAACCTTCAGCAG AAACTGAAAGACCTGCACGGGGCATGGAAACGGTGCTTTGATAAAAAGCTGGCAGCGAAAGCGCCCGTGT TTAAACATAAAAGCCACGGCAATGACTCTGTTCGTTTCGTCAATTTTGACAAATACTGCCAGCTTGAGTA CAGACGCGTTAAGTTACCCTCGGGGCTGGGCTGGGTGACATTCCGGCAGTCCCGCGCCGTTGTGGGTAAA ATCAAATACGCAACGGTCAGCCAGCACGCTGGCGGCTGGTATATCTCGTTTCAGGTAGAAATGGAGGTCG AACAGCCCGCACACCCGTCAACGTCTGCTGTCGGCCTGGATGCCGGTATCAGCAAGCTGGTAACGCTGTC AGACGGCACGGTGTTTGAACCTGTCAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGC CAGCTTGCCCGTAAAGTAAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAATTTCCCGCTTACATT CGCATATCGCCAACATCCGCCGCGATTACCTACACAAAGTCACAACAACAGTCAGCAAAAACCACGCGAT GATCGTTATTGAAGATTTGAAGGTTTCCAACATGTCGAAATCGGCAGCGGGTACGGTAGACGAGCCGGGG CGCAACGTTGCGGCAAAATCAGGTCTTAACCGGGCGATACTGGATCAGGGCTGGTACGAAATGCGCCGCC AGCTCGAATATAAGCAGCGATGGCGCGGCGGTGAGGTGCTGGCAGTAAATCCGGCCTACACCAGCCAAAA ATGCGCCTGCTGTGGTCATACCTCGAAGGAAAACCGTCAATCGCAGGCCACATTTGTCTGCGTGGCGTGT GGATACGAAGCGAATGCTGATGTAAACGGCGCGTGTAATATTTTAGCGGCAGGACATGCCGTTCTTGCCT GTGGAGGGACGGTGCAGTCAGTCCGCCCGATGAAGCAGGAACCTGGCACTGAGCGATCAGTCGTCACCCA CTAATGGGAATCCCCCTCCTGAATCGCGCAGCGTGAAGGTGGGGAGGATGTCAAATTCCGTATAACACGT TATTGTTCTTCAGTACTTGATGACATCTTAATTCCCTTATGTTCCTGCATAAATCATTTCACATTCAGGA ATTTTTTTTGGAAATATAGGCTTTATGAGTTTTTTTCATGATTTTTTCCTCGTCACCGGTAGCTCAAGTT AACTGCCTCCCCCTCTCTGAAGAAGGGCGAGGATTACCACTTCAACGCAACCTACCTAAACCACATTAAG CGGCTTTAGGGTTTACAGTCGCTCCGTGGGCTAATGTGATCAGCCCGACCGCTTTTATATTCTTCGCCGC ATTTACGTCACTATCATGGTTAGCCCCACATTCAGGGCAAATCCATGACCTGACGTTAAGCGCCATTTTT GTCATGGTATAGACGCAACCGCTATAGCGTTTTGAGGACGGGAAAAACTGGTCAATGGCGACCACGGAAC GCCCCGACCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGCGGGAGGGGAATTTGAATTGTCGCG ATAGAGTTAAAGGAACATTTAGCTGCGCTGGTACTTAATGTAGCGCTTTACGACTTCCAGCGGCGCTCCA CCACATGAGCCAACAAAGTAGCTACGTGACCAGAGAACAGGCTTATTGTACGCCTCCCGCAAATCCAGAA ATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGTTGTTAACCAGTTTTGACAGTTGCACAGTTGG TGGGTATTCGACCAGCATGTGAACATGATCGGCTTCTCCGTCACATTCTTTCAGTACAGCACCAAAATCA CCGCAAACTTCACCTGCATACTGATTTACTTTTTCCAGATGTAACTCACCGAAAACTTTACGGCGGTACT TAGACACAAAAACAATGTGAACATGTAATAAATAGGCAGAATGACGACTTCTGTTTATTTCCTGCACCTG TTGACTCCGTGATGTACATATGGTTATTTATACAGGTTGTCTCAATACACACTGAATGCAAAATGCTAAT CCAGAAAGCGTATAAATACAGACTCAACCCGACAGATGCACAGGCGCAACGACTGCGTCAGATGTGCGGC TGCGCCCGTTTTGTCTGGAATTACGCCCTGGCAGAGACGCAGCGTATTCTTGAGGCCGGACAAAAACTCC CTTCCGCCTTTGAGCTGAATAAAATGCTGACAGGATGGAAGAAATTACCTGAGCTGGCGTTTTTATCTGA TGCCTACACCGACAACCTTCAGCAGAAACTGAAAGACCTGCACGGGGCATGGAAACGGTGCTTTGATAAA AAGCTGGCAGCGAAAGCGCCCGTGTTTAAACATAAAAGCCACGGCAATGACTCTGTTCGTTTCGTCAATT TTGACAAATACTGCCAGCTTGAGTACAGACGCGTTAAGTTACCCTCGGGGCTGGGCTGGGTGACATTCCG GCAGTCCCGCGCCGTTGTGGGTAAAATCAAATACGCAACGGTCAGCCAGCACGCTGGCGGCTGGTATATC TCGTTTCAGGTAGAAATGGAGGTCGAACAGCCCGCACACCCGTCAACGTCTGCTGTCGGCCTGGATGCCG GTATCAGCAAGCTGGTAACGCTGTCAGACGGCACGGTGTTTGAACCTGTCAACAGTTTTAAACAGAACCA AAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTAAAATTCAGTGCGAACTGGAAGAAGCAG AAAGCAAGAATTTCCCGCTTACATTCGCATATCGCCAACATCCGCCGCGATTACCTACACAAAGTCACAA CAACAGTCAGCAAAAACCACGCGATGATCGTTATTGAAGATTTGAAGGTTTCCAACATGTCGAAATCGGC AGCGGGTACGGTAGACGAGCCCGGGCGCAACGTTGCAGCAAAATCAGGTCTTAACCGGGCGATACTGGAT CAGGGCTGGTACGAAATGCGCCGCCAGCTCGAATATAAGCAGCGATGGCGCGGCGGTGAGGTGCTGGCAG TAAATCCGGCATATACCAGCCAGAAATGCGCGCGTTGCGGTCATACAGTAAAGGAAAATCGTCAATCGCA GGCAGTATTTGTCTGCGTGGCGTGTGGTTACGAAGCGAACGCCGACATAAACGGCGCTCAAAATATTCTC GCGGCAGGACATGCCGTGTTGTCCGGGATTAACCCCGGACGCGCCCGTAAGGCGGCGTAA
Region Details
| Region | 1 |
| Region Length | 10Kb |
| Completeness(score) | incomplete(30) |
| Specific Keyword | transposase |
| Region Position | 11559-21558 |
| # tRNA | 0 |
| # Total Proteins | 11 |
| # Phage Hit Proteins | 7 |
| # Hypothetical Proteins | 3 |
| Phage + Hypothetical Protein % | 90.9% |
| # Bacterial Proteins | 1 |
| Attachment Site | no |
| # Phage Species | 6 |
| Most Common Phage Name(hit genes count) | PHAGE_Bacill_phiNIT1_NC_021856(1) PHAGE_Mycoba_Kimberlium_NC_028792(1) PHAGE_Gordon_Kvothe_NC_030914(1) PHAGE_Mycoba_Job42_NC_021538(1) PHAGE_Gordon_Demosthenes_NC_030944(1) PHAGE_Sulfol_SMV3_NC_029103(1) PHAGE_Bacill_Shanette_NC_028983(1) PHAGE_Mycoba_Cabrinians_NC_028678(1) PHAGE_Lister_LP_026_NC_024375(1) PHAGE_Phage_Gifsy_1_NC_010392(1) PHAGE_Brocho_A9_NC_015253(1) PHAGE_Bacill_0305phi8_36_NC_009760(1) PHAGE_Acinet_YMC11/12/R2315_NC_028855(1) PHAGE_Bacill_JL_NC_028982(1) PHAGE_Microc_Ma_LMM01_NC_008562(1) PHAGE_Bacill_G_NC_023719(1) PHAGE_Salmon_SJ46_NC_031129(1) PHAGE_Acinet_YMC_13_01_C62_NC_024785(1) PHAGE_Clostr_c_st_NC_007581(1) PHAGE_Bacill_CP_51_NC_025423(1) PHAGE_Entero_If1_NC_001954(1) |
| First Most Common Phage # | 2 |
| First Most Common Phage % | 9.09% |
| GC % | 42.95% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Questionable (score 70-90)
Incomplete (score < 70)
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Score: | The score of the region based on the above criteria. |
| # Total Proteins: | The number of ORFs present in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi|00000000|ref|NBOQ01000061.1| Klebsiella pneumoniae strain ARP-657 plasmid unnamed24 contig61, 55362, gc%: 42.05%
Download details as .txt file: detail.txt file_download
Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File
Hits against Bacterial Database or GenBank File
Region 1, total 11 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | complement(11559..12611) | PHAGE_Gordon_Demosthenes_NC_030944: hypothetical protein; B7D73_26610; phage(gi100079) | 1.19e-09 | Showinfo_outline |
| 2 | complement(12639..13460) | hypothetical protein; B7D73_26615 | 0.0 | Showinfo_outline |
| 3 | complement(13522..13875) | hypothetical protein; B7D73_26620 | 0.0 | Showinfo_outline |
| 4 | complement(14020..15006) | hypothetical protein; B7D73_26625 | 0.0 | Showinfo_outline |
| 5 | complement(15340..17139) | PHAGE_Bacill_G_NC_023719: gp299; B7D73_26630; phage(gi593777755) | 1.59e-27 | Showinfo_outline |
| 6 | 17430..17678 | PHAGE_Acinet_YMC11/12/R2315_NC_028855: hypothetical protein; B7D73_26635; phage(gi971749826) | 1.65e-06 | Showinfo_outline |
| 7 | 17668..17952 | addiction module toxin RelE; B7D73_26640 | 0.0 | Showinfo_outline |
| 8 | 18106..19332 | PHAGE_Entero_If1_NC_001954: hypothetical protein; B7D73_26645; phage(gi9630756) | 0.0 | Showinfo_outline |
| 9 | complement(19604..19828) | PHAGE_Phage_Gifsy_1_NC_010392: transposase; B7D73_26650; phage(gi169257226) | 4.05e-31 | Showinfo_outline |
| 10 | complement(19907..20335) | PROPHAGE_Escher_Sakai: putative transposase; B7D73_26655; phage(gi15834436) | 3.48e-41 | Showinfo_outline |
| 11 | 20371..21558 | PHAGE_Entero_If1_NC_001954: hypothetical protein; B7D73_26660; phage(gi9630756) | 0.0 | Showinfo_outline |
Sequence
>complement(11559..12611)
KlebsiellapneumoniaeMTPATTANNNAKILTLNVNSDLEIKYFEPHELTKAIEYQDEEEYIIVRANEHFNVDCFGENDVIPIFKRVTPFRAPLNSKYRPNPITLRRMVKLLLNNEVTAGICLQGESGSGKTELALYISHMLNWPITIKQINNELSIDDLEGMRTLENGNTRYVYSDLVQGYRDGHIILLDEIDKINPDTAAKLHMPLERKPWATGKEGGELIYANRYTRFIGTANTNMSGEDMRFASSQSQDSAFIKRFLILPMIRPDEQAMYCAAEAHFPDLKPSCLRMFAKVAFELNNLKDDELVMDIRELISWISTSKVLDEEISVGFKIAFTSKLSSEACSKAEILLEQLFPEEVSRSISQL
Sequence
>complement(12639..13460)
KlebsiellapneumoniaeMHLSSKLRKIENENQLSFRFFFEDDGIKEKVYIPVESNSIVEDHGNKVPNHDYQELDDFIWTDEHICTFFYKIMESSFVTVQYHIDQSMVYKIDANGFRYLTPKLKLELDWYCTKQFQIVCHRFGYDPDEIIDFIKSRLLLAIRSRESRQDLIKSLETDNLTFSHPIIGPIKWSDFLDDRYCYTRRSLIIKWSIADRLKLFKKIFDEQMIILENLSENGAWTLDQNTDSYVLKTEAVDYVEWLYSDACKVISHVYGFDYGLLFSTSKAIIKNL
Sequence
>complement(13522..13875)
KlebsiellapneumoniaeMFTNHINTVCVSGEVNKVIVRNEYDTIMLILDNKQEMERNGKIEMVVSSIQVKIPQDLYDKEFKEIIRGDNLMITGCLVTDKVHSGELTVVRVQAQKLIHRAPKPIEGFGGSRFLTR
Sequence
>complement(14020..15006)
KlebsiellapneumoniaeMTTATTAKHKAKTPTRAKTATSAKPSRPAADKIEKDSILMAYSKAFYGEEIPPSNTGSDICKIEKGTDDDKSYIWYMTESVSRVIELKALEESSKLKHLVGCERSVIYSVNVGDVFINEINLDEAEQLLEEFPDIPREKTLEAFLSSLDEKLVELNISSIVTSESLHFGKDKLTKLGAVKVSQWLDMVIDEVHVFYKRQHFVETVESRHEDLNDLYGKLKPLMSEFGLQDKYYDLSFNEMMIHKVNGFDFVVADLMPRLLKLEASLKDDEMKAKAAMETNQAQEIKAVENNSFVKGYDNTVSRVLKGAACVAILYFGISTIMNFIGYN
Sequence
>complement(15340..17139)
KlebsiellapneumoniaeMSSSTEEQERVIQNMDKNTMVIACPGSGKSFTMKEGTKAIFQRHPLARVSLVTFTRAATDSLKNSLQKMIEPRFLNRIEVDTFHGFIKKMVNQTGWKGGLLIGHKQMAMVSRVQKHLNYHESVNDIMPFIDGIGRELNPDIIRIKYTRDQVAFYNEYMSFCKKDNVADFNSLSKYVVGMLSADKMRPLSITHLIVDEVQDTDGIQFTWISEHAKRGINTTIVGDDDQTIYSFRDAGGVKIFRQFDKAYNPNVFHLTKCFRCAPLILKFADTVIRKNKARYEKSLVSGRNGDKGKVTFIRSDKADDQFDVIKELVEKNPHDWAILSRNNTTLDKMESYLEVPVTRIGGKSFWEGLEPSNILHLFSFFRQPGNIGLMKRVLSFLNEDEQVLDTVWKHMSSQKVTFQQTDLPPDASVLTKTLHKHMAPMMTDTRVKEEIENRFKKIREWLEMAGYKMSNTKGEPSVTRISLMSCYRWAMKDGWLKMLNIAAGMTMGNKKESSETEQSGICLCTLHGSKGLEWKKVLIINCNHDQIPSPKVIGDEGIEEERRLFFVGMTRAELELYITWHGKPSAFITESFPKVVELSEENPCIDGSEDMCLQ
Sequence
>17430..17678
KlebsiellapneumoniaeMAFQVLTTTAASITELKRDPMGTFNAGEGAPVAILNRNEPAFYCVPPALYAQLMELLEDQELGRIADERIGEAVIEVSLDDL
Sequence
>17668..17952
KlebsiellapneumoniaeMTYKLAFNESALKEWKKLGHTIREQFKKKLAERLLNPRVPASQLHGRKDQYKIKLRGAGYRLVYSVNDDVVTVTVIGVGKRENDDIYHLTKHRN
Sequence
>18106..19332
KlebsiellapneumoniaeMLIQKAYKYRLNPTDAQAQRLRQMCGCARFVWNYALAETQRILEAGQKLPSAFELNKMLTGWKKLPELAFLSDAYTDNLQQKLKDLHGAWKRCFDKKLAAKAPVFKHKSHGNDSVRFVNFDKYCQLEYRRVKLPSGLGWVTFRQSRAVVGKIKYATVSQHAGGWYISFQVEMEVEQPAHPSTSAVGLDAGISKLVTLSDGTVFEPVNSFKQNQSRLARLQRQLARKVKFSANWKKQKARISRLHSHIANIRRDYLHKVTTTVSKNHAMIVIEDLKVSNMSKSAAGTVDEPGRNVAAKSGLNRAILDQGWYEMRRQLEYKQRWRGGEVLAVNPAYTSQKCACCGHTSKENRQSQATFVCVACGYEANADVNGACNILAAGHAVLACGGTVQSVRPMKQEPGTERSVVTH
Sequence
>complement(19604..19828)
KlebsiellapneumoniaeWSGRSVVAIDQFFPSSKRYSGCVYTMTKMALNVRSWICPECGANHDSDVNAAKNIKAVGLITLAHGATVNPKAA
Sequence
>complement(19907..20335)
KlebsiellapneumoniaeMTICTSRSQQVQEINRSRHSAYLLHVHIVFVSKYRRKVFGELHLEKVNQYAGEVCGDFGAVLKECDGEADHVHMLVEYPPTVQLSKLVNNLKAVTSRRLRNEFLDLREAYNKPVLWSRSYFVGSCGGAPLEVVKRYIKYQRS
Sequence
>20371..21558
KlebsiellapneumoniaeMLIQKAYKYRLNPTDAQAQRLRQMCGCARFVWNYALAETQRILEAGQKLPSAFELNKMLTGWKKLPELAFLSDAYTDNLQQKLKDLHGAWKRCFDKKLAAKAPVFKHKSHGNDSVRFVNFDKYCQLEYRRVKLPSGLGWVTFRQSRAVVGKIKYATVSQHAGGWYISFQVEMEVEQPAHPSTSAVGLDAGISKLVTLSDGTVFEPVNSFKQNQSRLARLQRQLARKVKFSANWKKQKARISRLHSHIANIRRDYLHKVTTTVSKNHAMIVIEDLKVSNMSKSAAGTVDEPGRNVAAKSGLNRAILDQGWYEMRRQLEYKQRWRGGEVLAVNPAYTSQKCARCGHTVKENRQSQAVFVCVACGYEANADINGAQNILAAGHAVLSGINPGRARKAA
Klebsiella pneumoniae strain ARP-657 plasmid unnamed24 contig61
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
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Questionable (score 70-90)
Incomplete (score < 70)
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Length: 55362 bps
Phages: 1
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Click on a region in the genome above to show details here.
Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Locus 1: B7D73_26610 (Region 1)
Locus: B7D73_26610ORF Start: 11559
ORF Stop: 12611
Strand: Backward
Protein Sequence: MTPATTANNNAKILTLNVNSDLEIKYFEPHELTKAIEYQDEEEYIIVRANEHFNVDCFGENDVIPIFKRVTPFRAPLNSKYRPNPITLRRMVKLLLNNEVTAGICLQGESGSGKTELALYISHMLNWPITIKQINNELSIDDLEGMRTLENGNTRYVYSDLVQGYRDGHIILLDEIDKINPDTAAKLHMPLERKPWATGKEGGELIYANRYTRFIGTANTNMSGEDMRFASSQSQDSAFIKRFLILPMIRPDEQAMYCAAEAHFPDLKPSCLRMFAKVAFELNNLKDDELVMDIRELISWISTSKVLDEEISVGFKIAFTSKLSSEACSKAEILLEQLFPEEVSRSISQL
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: B7D73_26610, hypothetical protein, phage(gi100079), PHAGE_Gordon_Demosthenes_NC_030944
Homolog/Ortholog E-Value: 1.19e-09
Locus 2: B7D73_26615 (Region 1)
Locus: B7D73_26615ORF Start: 12639
ORF Stop: 13460
Strand: Backward
Protein Sequence: MHLSSKLRKIENENQLSFRFFFEDDGIKEKVYIPVESNSIVEDHGNKVPNHDYQELDDFIWTDEHICTFFYKIMESSFVTVQYHIDQSMVYKIDANGFRYLTPKLKLELDWYCTKQFQIVCHRFGYDPDEIIDFIKSRLLLAIRSRESRQDLIKSLETDNLTFSHPIIGPIKWSDFLDDRYCYTRRSLIIKWSIADRLKLFKKIFDEQMIILENLSENGAWTLDQNTDSYVLKTEAVDYVEWLYSDACKVISHVYGFDYGLLFSTSKAIIKNL
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: B7D73_26615, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 3: B7D73_26620 (Region 1)
Locus: B7D73_26620ORF Start: 13522
ORF Stop: 13875
Strand: Backward
Protein Sequence: MFTNHINTVCVSGEVNKVIVRNEYDTIMLILDNKQEMERNGKIEMVVSSIQVKIPQDLYDKEFKEIIRGDNLMITGCLVTDKVHSGELTVVRVQAQKLIHRAPKPIEGFGGSRFLTR
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: B7D73_26620, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 4: B7D73_26625 (Region 1)
Locus: B7D73_26625ORF Start: 14020
ORF Stop: 15006
Strand: Backward
Protein Sequence: MTTATTAKHKAKTPTRAKTATSAKPSRPAADKIEKDSILMAYSKAFYGEEIPPSNTGSDICKIEKGTDDDKSYIWYMTESVSRVIELKALEESSKLKHLVGCERSVIYSVNVGDVFINEINLDEAEQLLEEFPDIPREKTLEAFLSSLDEKLVELNISSIVTSESLHFGKDKLTKLGAVKVSQWLDMVIDEVHVFYKRQHFVETVESRHEDLNDLYGKLKPLMSEFGLQDKYYDLSFNEMMIHKVNGFDFVVADLMPRLLKLEASLKDDEMKAKAAMETNQAQEIKAVENNSFVKGYDNTVSRVLKGAACVAILYFGISTIMNFIGYN
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: B7D73_26625, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 5: B7D73_26630 (Region 1)
Locus: B7D73_26630ORF Start: 15340
ORF Stop: 17139
Strand: Backward
Protein Sequence: MSSSTEEQERVIQNMDKNTMVIACPGSGKSFTMKEGTKAIFQRHPLARVSLVTFTRAATDSLKNSLQKMIEPRFLNRIEVDTFHGFIKKMVNQTGWKGGLLIGHKQMAMVSRVQKHLNYHESVNDIMPFIDGIGRELNPDIIRIKYTRDQVAFYNEYMSFCKKDNVADFNSLSKYVVGMLSADKMRPLSITHLIVDEVQDTDGIQFTWISEHAKRGINTTIVGDDDQTIYSFRDAGGVKIFRQFDKAYNPNVFHLTKCFRCAPLILKFADTVIRKNKARYEKSLVSGRNGDKGKVTFIRSDKADDQFDVIKELVEKNPHDWAILSRNNTTLDKMESYLEVPVTRIGGKSFWEGLEPSNILHLFSFFRQPGNIGLMKRVLSFLNEDEQVLDTVWKHMSSQKVTFQQTDLPPDASVLTKTLHKHMAPMMTDTRVKEEIENRFKKIREWLEMAGYKMSNTKGEPSVTRISLMSCYRWAMKDGWLKMLNIAAGMTMGNKKESSETEQSGICLCTLHGSKGLEWKKVLIINCNHDQIPSPKVIGDEGIEEERRLFFVGMTRAELELYITWHGKPSAFITESFPKVVELSEENPCIDGSEDMCLQ
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: B7D73_26630, gp299, phage(gi593777755), PHAGE_Bacill_G_NC_023719
Homolog/Ortholog E-Value: 1.59e-27
Locus 6: B7D73_26635 (Region 1)
Locus: B7D73_26635ORF Start: 17430
ORF Stop: 17678
Strand: Forward
Protein Sequence: MAFQVLTTTAASITELKRDPMGTFNAGEGAPVAILNRNEPAFYCVPPALYAQLMELLEDQELGRIADERIGEAVIEVSLDDL
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: B7D73_26635, hypothetical protein, phage(gi971749826), PHAGE_Acinet_YMC11/12/R2315_NC_028855
Homolog/Ortholog E-Value: 1.65e-06
Locus 7: B7D73_26640 (Region 1)
Locus: B7D73_26640ORF Start: 17668
ORF Stop: 17952
Strand: Forward
Protein Sequence: MTYKLAFNESALKEWKKLGHTIREQFKKKLAERLLNPRVPASQLHGRKDQYKIKLRGAGYRLVYSVNDDVVTVTVIGVGKRENDDIYHLTKHRN
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: B7D73_26640, addiction module toxin RelE
Homolog/Ortholog E-Value: N/A
Locus 8: B7D73_26645 (Region 1)
Locus: B7D73_26645ORF Start: 18106
ORF Stop: 19332
Strand: Forward
Protein Sequence: MLIQKAYKYRLNPTDAQAQRLRQMCGCARFVWNYALAETQRILEAGQKLPSAFELNKMLTGWKKLPELAFLSDAYTDNLQQKLKDLHGAWKRCFDKKLAAKAPVFKHKSHGNDSVRFVNFDKYCQLEYRRVKLPSGLGWVTFRQSRAVVGKIKYATVSQHAGGWYISFQVEMEVEQPAHPSTSAVGLDAGISKLVTLSDGTVFEPVNSFKQNQSRLARLQRQLARKVKFSANWKKQKARISRLHSHIANIRRDYLHKVTTTVSKNHAMIVIEDLKVSNMSKSAAGTVDEPGRNVAAKSGLNRAILDQGWYEMRRQLEYKQRWRGGEVLAVNPAYTSQKCACCGHTSKENRQSQATFVCVACGYEANADVNGACNILAAGHAVLACGGTVQSVRPMKQEPGTERSVVTH
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: B7D73_26645, hypothetical protein, phage(gi9630756), PHAGE_Entero_If1_NC_001954
Homolog/Ortholog E-Value: 0.0
Locus 9: B7D73_26650 (Region 1)
Locus: B7D73_26650ORF Start: 19604
ORF Stop: 19828
Strand: Backward
Protein Sequence: WSGRSVVAIDQFFPSSKRYSGCVYTMTKMALNVRSWICPECGANHDSDVNAAKNIKAVGLITLAHGATVNPKAA
Homolog/Ortholog Species: Transposase
Homolog/Ortholog Protein: B7D73_26650, transposase, phage(gi169257226), PHAGE_Phage_Gifsy_1_NC_010392
Homolog/Ortholog E-Value: 4.05e-31
Locus 10: B7D73_26655 (Region 1)
Locus: B7D73_26655ORF Start: 19907
ORF Stop: 20335
Strand: Backward
Protein Sequence: MTICTSRSQQVQEINRSRHSAYLLHVHIVFVSKYRRKVFGELHLEKVNQYAGEVCGDFGAVLKECDGEADHVHMLVEYPPTVQLSKLVNNLKAVTSRRLRNEFLDLREAYNKPVLWSRSYFVGSCGGAPLEVVKRYIKYQRS
Homolog/Ortholog Species: Transposase
Homolog/Ortholog Protein: B7D73_26655, putative transposase, phage(gi15834436), PROPHAGE_Escher_Sakai
Homolog/Ortholog E-Value: 3.48e-41
Locus 11: B7D73_26660 (Region 1)
Locus: B7D73_26660ORF Start: 20371
ORF Stop: 21558
Strand: Forward
Protein Sequence: MLIQKAYKYRLNPTDAQAQRLRQMCGCARFVWNYALAETQRILEAGQKLPSAFELNKMLTGWKKLPELAFLSDAYTDNLQQKLKDLHGAWKRCFDKKLAAKAPVFKHKSHGNDSVRFVNFDKYCQLEYRRVKLPSGLGWVTFRQSRAVVGKIKYATVSQHAGGWYISFQVEMEVEQPAHPSTSAVGLDAGISKLVTLSDGTVFEPVNSFKQNQSRLARLQRQLARKVKFSANWKKQKARISRLHSHIANIRRDYLHKVTTTVSKNHAMIVIEDLKVSNMSKSAAGTVDEPGRNVAAKSGLNRAILDQGWYEMRRQLEYKQRWRGGEVLAVNPAYTSQKCARCGHTVKENRQSQAVFVCVACGYEANADINGAQNILAAGHAVLSGINPGRARKAA
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: B7D73_26660, hypothetical protein, phage(gi9630756), PHAGE_Entero_If1_NC_001954
Homolog/Ortholog E-Value: 0.0
Lysis
Terminase
Portal Protein
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Other
Transposase
Fiber Protein
Plate Protein
tRNA
Plate Protein
tRNA
Download data as .txt file: png_input file_download