Submission Results
Sequence Name: Not Available
GenBank Accession Number: AOOR01000034.1 open_in_new
GenInfo (GI) Number: 0000000000 open_in_new
Download Results: AOOR01000034.1.PHASTER.zip
gi||ref|AOOR01000034.1| Dickeya zeae MK19 DZEMK19_contig34, whole genome shotgun sequence. 8960, gc%: 55.83%
Download summary as .txt file: summary.txt file_download
Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.
| Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
|---|---|---|---|---|---|---|---|---|
| 1 | 7.9Kb | incomplete | 50 | 9 | 401-8374 info_outline | PHAGE_Ralsto_RS138_NC_029107(3) | 56.03% | Show info_outline |
Region DNA
>1 401-8374 ATGGCGCACCCGCAGGAAATCCGCGACAAGCTGCGCCGGGCCTATATTTTCGGGCAGATG TCGCTTGAAATCGCTGCGGCGCAGTCGGGCGTCGCGTTCGGCACGGCGCGGCGCTGGAAA AAGGACGCTCAAGATGCGGGTGACGATTGGGACAAGTTGAGGGCGGCGCATGTGATGGCG GGCGGCGGTCTGGAAGATATCGGCCGCGCAGTGTTAACAGGGCTGGTAACGCAGTACCAG ACCACGCTGGAAATGCTCAACGGTGCAGCAGATATCCCGCCGCAGGCCCGCGTCGAGCTG CTGGCGAGCCTCGCTGATGCGTTTAACAAAGCGACGTCTGCCAGTAAAAAAATTCTGCCG GAGACGAGTCAGCTTGCGGTCGCGCTGGATGTATTACAGCGGCTCAGTGCGTTTGTCGCT GAGTCACACCCGCAACATCTTGCGGCATTCGCTGAGATTCTGGAACCGTTTGGAAAAGAG ATGGAGCGGCACTATGGCTAATAATTATGAGCCGGTGAAAGAGCGTAATGCATTGAGTCA GCGCGTTATTGCTGCGCTGCGCAACGAGTTCACCGAAGACGAGTTAAACCAATTGGGTTT CCCTGAAGCGATGTGGCTGGCAATGCAGGTGATATGCGGCCCCGGTGGGGCCGCTCAGGT TATTCGCTTGTCTCAGATTCATCAGTGACCTTGGAGGCCACAAGGTCGAAGGCCCAGTCA TAAGACCGCTGAATACGCGCTCGTTCTTCTTTGGCTGCATCGTTATTGGTATTAACGGTG CGGCTCATGGGAATGACGTTTTTGGCTGACGTGAGCTCATGGAATGTGTGCATATAGATA TCGGTCGCCATGCGTGCAATTTGTATCCGCTGGTCGATGGTGAGTTTTGTTTTAACAGAC ATTTAAGCCCCTTTTGGCATGGTAAAAATTCGCGTTTAAACCGTATCAGAGGGGGTTCCT TTTTTACAGGGGTTGAGTGTGACCAGGAAGACCACAACCAAAGACTTTCTGCTGGGCCTC GCCGAGCTTGCTGCCAGCCTGCGGCGCACGATTGAAGCCGAAAGCGTCGGTTTTGATCCG TCAGCGGAAGCGATAGCCGAGCGACGCGCCCGCGTTCTCGACCCCGTTGGCGGCTACGTC TATTTTGTTGAGCACTATTTCCCGCACTACGTTCGACATGCAGACAAGAGCGAACTGCAT AAATATCTGTTCGCCCGCCTGCCGGAGATTGTCGCCAGCACAACCAGCGAGAATGACGCT ATCGCTGCACCGCGTGGCGAAGCGAAATCAACGCTGGTCAGCCAGCTATTTAACATCTGG TGCATTGTCTGCGCGAGCAAGCACTACTTAGTGATCGTGATGGACTCGATTGACCAGGCG TATCCGATGCTGGAAGCGATCAAGGCAGAACTGGCCTACAACCCCCGGATTGCAATGGAT TTCCCCGAGGTAGCGGGCGGTGGGCGCGTCTGGCAGGCCGGAACCATCGTGACGAAGAAC GATATCAAGGTGCAGGTCGCGGGTAGCGGTAAAAAACTGCGTGGCCTGCGCCACGGCCCT TTCCGGCCCGATTTGGTGGTGCTGGATGATATCGAGAACGACGAACAGGTGCGCAGCCCG GAGCAACGCGACAAGCTCGACAACTGGCTTAAAAAGACCATCCTGCCCCTCGGTGGGGCG GGCGCGAAGTTCGATGTCATCTACATCGGCACCATCCTGCACTACGATTCCGTACTGTCA CGGACGCTGAAAAATACACTGTGGAAGACGGCGCGATTCAAGGCGATCATCCAGTGGCCG GTCAATATGTCGTTGTGGGATGAATGGGAAGAAATCCTGCGCAATAACGACGACAAAGGG CAGTGGCTGGCTAACGCGTTCTATCAGCAGCATAAGGCTGAAATGGACGAAGGCGCAGTG GTGTCATGGTCAGCCCGGCCTATTCTGGCCCTGATGCTGATCCGCGCGCGAGACGGTCAC TCCACATTTGATTCCGAATATCAGAATGACCCTGTGAGCGGAGAGGATGCACCCTTTGCC AACTGCATTACGTTCTGGGTCAATCGTCTTAACGAGTGGATATTCCTGGGCGCATGTGAC CCCAGCCTGGGCCGGGCTGGTGGCAAGCGTGACCCGTCTGCACTGCTGGTGGGTGGGTTT AACCGCCATACCGGCATTCTTGATGTTGTTGAGGCGGCGATCCGTAAGCGCGTTCCAGAC AAAATTATCTCGGACATCATTGAATTGCAGCGCATCTACCGCTGTTTATGCTGGTCTGTC GAGGCCGTCCAGTTCCAGGAATTCTTACGTACTGAGCTTGTGAAGCGTAGCGCGGCCACC GGTATCCCGGTTCCCGCGCGTGGCGTGACGCCCAGCAGCGACAAAATTCTGCGCATCGAA TCGTTGCAACCGCACATGGCTAATGGCCTGATCCGCCTGCACCCCAGCCAGTCAACGTTG ATTGACCAGCTCCGGCATTTTCCTATGGCTGATCATGACGACGGCCCTGACGCCCTGCAC ATGCTGTGGGCACTGGCAGTGTCCGGGTTCGCTGCATTTTCGTTTACTCCCGTCCCTCGC AATAACGCCCCGGATTCTGATGACCGGGACAGTGGTTTTCACCGCGCTGGTGCAGCGGGA TATGGCTTTGGTTCAGGAGGTTGGTAGTGGCACAGATAGTTGACCAGTTCGGTCGCCCGT TTAACAAAGAAGTGCTGTCCGGGCCGCAGACCGCACGGACCGCACAGATACAACGGCACT GGCCTGAGCATCCCTCGCGCGGGCTGGATATTCGCCGCCTGCCGCGCATCCTTGAAGCGG CAGAACGCGGCGATATCGCCGCGCAGGCCGACTTGTTTGAAGACATGGTCGAAAAGGATG GGCACATATTTTCAGAGATGGCGAAGCGCAAAAACGCGCTGCTAGGCCTGGCGTGGAGTA TTAAGCCGCCCTTAAATGCTACAGCAGCAGAAAAGAACATGGCGGCGATGGTGTCAGAGT GGTTTCAGGGCATCCCGGATATCCATGACCTGATACTGAATGCGGCTGATGCCATCGGTC ACGGATTTGCAGCGCAAGAGATAGAGCGGTGGGAGTTAGAGGAAAATATCTGGCTACCCG TTAAAACGGTACTTCGCCCACATCGTTGGTTTTGCACAAACCCGGAAATTGACGACACCG TGCGCCTGGCTGATGGTTCAATGGGTGGCACTGAGTTGTGGCCGTTCGGCTGGATGGTGC ACGCGCATAACGCGAAATCCGGCTATATCGCTCAGGCGGGGCTGTATCGCGTGCTTGTGT GGCCGTATTTATTCAAGAATTTCAGTCTGCGCGATTTCGCTGAATTCCTTGAAATCTACG GACTGCCAGCAAGAATCGGCACGTACATGGCGAGCGCAACAGAAGAAGAGAAAAACCGGC TGTTGTATGCGCTGGTTACGCTCGGTCACGATGCTGCTGGTATTGTCCCCGAGGGGACAA ACATCAGGTTTGAGTCTGCTGCTAACGGCCAGGCCGAGCCATTCATGTCAATGATTAACT GGTGCGAGCGCACAGCATCGAAAGTCATCCTTGGCGGTACGCTGACAAGCCAGGCCGACG GCAAAACATCGACCAACGCGCTCGGCAACGTTCATAACGAAGTCAGGAACGACATTCGTA TTGCTGATGCCAGGCAGTTGGAAGGTTTCTTCGGTAACGTGATATCGATGCTGCTTGCCA TCAACGGTCAGACGGTTTCCCGTCGTCGCCAGCCGCGATTTGTGTTCGATACGCAAGACA TTGAAGACATCATAAAATTCTCAACCGGCATTAAAACCCTGGTTGATGCCGGGCTGAAAA GCATTCCTGTGTCGTGGGTGCATCAGAAAATGGGCATTCCTGTCCCGAAAGATGATGAGC CGGTACTCACGCCTACCCCAGCAGCGACACCAGCCGCCGCGTTGTCGTCTCGTCCGTCGC CGTACCGGTCGTTTGCGGCGCTCAGTACCACGAGCGCGAATGATATCAGTGACCCGGCAC AGATAGCGCTGGATAACGCTCGATCTACGCCGGAAGCGATTAACGACGCGATGCAAGCGC TGATAGCGCCGCTGGTCGCAGCACTGCAAAACGGGCAAACCCCGGATGATGCGCTGGATA TCATCGCCGCCAGTTACCCGGCACTGGATGATGCCCAGTTGCAGCAACTGTTAGCTCAGG CACTGTTTGTTGCTGATGTTTGGGGGCGACTGAATGCCGACAGCTAACTCCGGCGACGTT AATCTGGCGTATGCCATTGGCCTGAAACCCGAGGAAGCGATCCGTTATTTTGAGTCGAAA GGGTACGTCATTGGTTTTAACTGGCATGACGTTGAGGCCCGAGCTCATGCCACCTCATTC ACCGTCGCGGGAATTCTCAAGCAGGATATCCTGACAGATATCAATTCGGCCTTTAAAAAG CGGTTGGATGACGGTGGCACCCAGCGCCAGTTTGACCAGCAGTTACTCCCCGTTCTGGAG CAAAAGGGCTGGCTCGGGCGTGGACTCAAAGCGGACGAAGATGGCGTGCTGGAAGGCAAG AAGCTGACACCGCGACGCCTCAAAACCATCTTTGAAACCAATATGCAGGCGGCGTATAAC GCCGGGCGCTATGAAGAGCAGATGGCGAATGTGGGGTTTCGCCCGTATTTTCAGCGCGTC GCTGTCATGGATGCGCATACGCGCCCAAAACATGCCGCATTGAATGGTTACACTGCGCGG GCAGATGATCCGGTGTGGCGGTTTATGTACCCACCGGACGGCTATCATTGCCGTTGCCGC GTTCGTGCGCTGTCTCAGTCTAATGTTGATACACGCAACATCACTATTCAGCACAGTGAG ATTATTGAAGTCGAGCAGGCGTGGGGGCCGAACGACTCAAGAAAAGTCCCGGCAATCCGT TGGAATGGTGAGCTGTACACGCCTGATGCGGGATTTGGTCACAACCCCGGCCAGGGATAT CTTGCTGCCCTCGGCCAGCGCTTGCTTGAGCGTTCTGCGACCGCTGATCCCCACCTTGCA GCGCTGGCGGTACAAGAAACACTGGGCAACTCGCCCCTGTTAACGGCGGTTTCAAACGAC GTTAGCGAGTTCGTGAGTAACACACTGCTGAACAAGCAAGCGCGCGGCCAATTGCGGCAC GTCGGCGCACTGCCGCCTGCTGTGCTTGACAGGCTGGCAGAGAAAGGCGCGGCGGTTGAA TCTGCGGTTATCACACTCACCGACGAGAATCTGCTGCACGCCATTCGTGACAGCAAAGAT GCACCATTGCCGGAAGAACTCTGGCGGCATTTGCCTGAATTTATCTATAAGCCGAAAGCG ATTCTTTATGACAAACAGAAAGCCGACGCTGCGCTGACTTATGTTATCGACCTGCCACAG TCTGCGGGAAAACTGGTGGTATTTATCGACCGGGTGATAAAGGCGCGCCCGGCGGGCGGA GGTAAACCAGAACGGATAACGACGCATCTGATACGCACGGGGAAAGTGTTACCGGCAAAA GCGTTTGATAATCCTGGAGCCTATGAGGTGTTGTGGGGATCGCTGGAGTAACGTGGCTGG CAGCGCCGGATTCGAACCGGATCATGTCGCTATGTCGCTATGTACAGCGACAACCTTTAC CGATGTAGGAAACTACTGCCAGCCACATCGTGTAATAAGTATACAACGAGAGCGCGGCTA TGAGTAGTTACGAGATCAAATACAACATTACTGATTTTGAAAAAGGCCTCGGCGAGCTGA TACAGCGTCTGGAGCACCGTGAACCGCTGATGCGCGAGCTAGCAGCGGCGATGCATGATG CGGTCGAAGAGAATTTCGCATCGCAGGGTCGGCCTGCATGGGCGGGATGGAGTCCGCGTT ATGCCCAACAGCGCCAGGGCGGGAAAATTTTGCAGAAATCCGGCCGCCTGGCTACCAGCA TCAACGAATATTCAGACAATGACACCGCGACGGTCGGCACAAACGTTGTCTATGCGCGCA TCCAACAAGAAGGCGGCACAATCAATATCCCCGCCCGCAGTCAGCGCGCATACTACAGGC AGCACAAAGACGGCAGCGTCGGTAATCGGTTCGTGAAAAAATCCAAATCCAATTTTTCGC AGTGGAACACGATTGGTGAATACAAAATTAAGATAACGGCGCGTCCGTTCCTGCATCTCA CAGAGCCGGATGTCGATGGGATGGAAACGACAGCGCAAACCTATCTGCAACGTGTTATTG ATGCATAGCGCTGAATGCGCCCGTATGCGGTTATCGCGTTGAATCCACACCATCACAGCA TTGCGAGTGCTACAGCGGCGTAAAATCGTTTTTAAACGGGTTTTAAAAACGGTTGCATCC GTTATCATGACCGCATTAACGACCCCGCCCCGCATTATCACCCACTGAACCCCATCACAT TATTTGGGAAGTCGTGCTGCCGTAACGTTGCAGCATGAAAAAGAAACCGCTTATTGCTGC CTTGTCAGCAGAAATCAATAAAGCCTCGCTCGGCGTCATCCAGTTGTTTCCGGCTGGCGA GTTTCGGGCACGCGATGGCCGCCCGACAGAGTGCGCAGCATGGATTATGACGGCTGAGGT GGCACAGGCATTGATCGCCGCCGCTGACGCCCAGCAAACCCCTTACGTTATCGACTACGA ACATCAGACCCTGCGAGCTGCAAAGAACGGTCAGCCCGCCCCTGCTAGTGGCTGGTTTAA AAAGCTGGAGTGGCGTGAGGGGACTGGTCTGTTTGCTGTTGATGTCGTGTGGACGGACAG CGCGGCGCAGATGATTGCGGACGGCTCGTACCGTTTTATCTCCCCAGTTTTTTCATACGA CAAATCAGGTCGCGTCTTGCAACTCCTGCACGCCGCGCTCACGAACACCCCCGCCGTGGA TGGCATGGACGAGGTCATGCTGGCCGCAGCCTCACTCCTCGCCGCCACATCATCAACCCA AGAGGACTCTATGGACGAACTATTGGAGCGTCTGCGCTGGATGCTGAATTTGCCAATCAC AGCAACGGCAGAAGACATTACCGCCGAGTTAAACAAACTCATTGATCAACTGGCCTCGGC GCCCGCCGGAACGGCAGCGGCATCGTTTCAGACGCTGTCTGCCACACCGTTCAACCTGAT TGAAAGACTCACGGCTGACGCAGCATCTGTCGCAGCGCTGACCGCGCAGGTCGCCAACCC TGACCCGGCCAAATGGGTGTCGGTTGAGGTGATGCAGCAGTCCGTTGCAGAAGCGCTTGC AACAGCAAACAACAACGTCGCTGCACTGGCGCAACGGCAATGCGCGGAGCTGATCACCGC CGCGCTGTCTGATGGCCGTTTGCTGCCTGCGCAAAAGCCTTGGGCGGAATCCCTGGCAGC GTCGTCCCCGGACAGTTTGAAAGCGTTCCTGGAAAAAGCGCCCAAAATCGCCGCGCTGAC CACTACCCAAACCGGCGGCCAGCCACCAGCAGGCGCGCCGAAGAAAGAAGCGCAGGACGA GGTTATCGACCCTGCTATCTGTTCGTTAATGGGCGTTGATCCCGCAGATGTTGCCCAGTT CATCAAGGAGAACAACCGATGAGTGATCGCAATACACCGCACCGCGACGGCGAGCTGTTC GCTGTTCCCGTGGCGGCAACCACTGAGATTTTTGGCGGCCATATCATCGCCGCGAATGCT GCCGGTTATGCCGTTCCGGCCACAGCTAACGCAGCACAGGTCACGCTGGGCGTGAGTGAC GGTTGGGTTGATAACAGTACAGGCGCGAATGGGGATGCTGACGCTATCGTGCGCCGTGGC CGCGCCTGGCTGTTTGCCAATTCAACAGCCGATGCGGTGACGCAGGCGCAGGTCGGGCAC GACTGCTACGTGGTTGACAGTCAGACTGTCGCCAAGACCAGTAACAGCAACGCCCGTCCG CTTGCTGGGCGGGTGCAGGCCATCGCTGATGATGGTGTGTGGGTTCTGATTTAA
Region Details
| Region | 1 |
| Region Length | 7.9Kb |
| Completeness(score) | incomplete(50) |
| Specific Keyword | terminase,portal,virion |
| Region Position | 401-8374 |
| # tRNA | 0 |
| # Total Proteins | 9 |
| # Phage Hit Proteins | 7 |
| # Hypothetical Proteins | 2 |
| Phage + Hypothetical Protein % | 100% |
| # Bacterial Proteins | 0 |
| Attachment Site | no |
| # Phage Species | 5 |
| Most Common Phage Name(hit genes count) | PHAGE_Ralsto_RS138_NC_029107(3) PHAGE_Pseudo_D3112_NC_005178(2) PHAGE_Pseudo_LPB1_NC_027298(2) PHAGE_Pseudo_H70_NC_027384(2) PHAGE_Pseudo_JBD69_NC_030908(2) PHAGE_Pseudo_JBD25_NC_027992(2) PHAGE_Pseudo_vB_PaeS_PAO1_Ab30_NC_026601(2) PHAGE_Pseudo_JBD24_NC_020203(2) PHAGE_Pseudo_MP29_NC_011613(2) PHAGE_Pseudo_MP42_NC_018274(1) PHAGE_Pseudo_PA1phi_NC_023700(1) PHAGE_Pseudo_JBD88a_NC_020200(1) PHAGE_Pseudo_JD024_NC_024330(1) PHAGE_Pseudo_FHA0480_NC_041851(1) PHAGE_Pseudo_JBD18_NC_027986(1) PHAGE_Pseudo_MP22_NC_009818(1) PHAGE_Rhodob_RC1_NC_020839(1) PHAGE_Pseudo_vB_PaeS_PM105_NC_028667(1) PHAGE_Pseudo_JBD67_NC_042135(1) PHAGE_Rhodov_RS1_NC_020866(1) PHAGE_Pseudo_B3_NC_006548(1) PHAGE_Pseudo_MP48_NC_024782(1) PHAGE_Pseudo_JBD30_NC_020198(1) |
| First Most Common Phage # | 3 |
| First Most Common Phage % | 33.33% |
| GC % | 56.03% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Questionable (score 70-90)
Incomplete (score < 70)
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Score: | The score of the region based on the above criteria. |
| # Total Proteins: | The number of ORFs present in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi||ref|AOOR01000034.1| Dickeya zeae MK19 DZEMK19_contig34, whole genome shotgun sequence. 8960, gc%: 55.83%
Download details as .txt file: detail.txt file_download
Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File
Hits against Bacterial Database or GenBank File
Region 1, total 9 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | 401..901 | PHAGE_Pseudo_JBD88a_NC_020200: hypothetical protein; PP_00002; phage(gi448244713) | 1.09e-70 | Showinfo_outline |
| 2 | 894..1088 | hypothetical; PP_00003 | 0.0 | Showinfo_outline |
| 3 | complement(1060..1302) | hypothetical; PP_00004 | 0.0 | Showinfo_outline |
| 4 | 1379..3067 | PHAGE_Pseudo_H70_NC_027384: terminase large subunit; PP_00005; phage(gi849255403) | 0.0 | Showinfo_outline |
| 5 | 3067..4647 | PHAGE_Ralsto_RS138_NC_029107: portal protein; PP_00006; phage(gi985760939) | 4.31e-145 | Showinfo_outline |
| 6 | 4634..5971 | PHAGE_Ralsto_RS138_NC_029107: virion morphogenesis protein; PP_00007; phage(gi985760940) | 1.62e-70 | Showinfo_outline |
| 7 | 6100..6648 | PHAGE_Pseudo_vB_PaeS_PM105_NC_028667: putative virion morphogenesis protein; PP_00008; phage(gi966198713) | 4.23e-18 | Showinfo_outline |
| 8 | 6855..7982 | PHAGE_Ralsto_RS138_NC_029107: Mu-like prophage I protein; PP_00009; phage(gi985760943) | 3.02e-72 | Showinfo_outline |
| 9 | 7979..8374 | PHAGE_Pseudo_JBD25_NC_027992: putative phosphoesterase; PP_00010; phage(gi100037) | 3.23e-29 | Showinfo_outline |
Sequence
>401..901
MAHPQEIRDKLRRAYIFGQMSLEIAAAQSGVAFGTARRWKKDAQDAGDDWDKLRAAHVMAGGGLEDIGRAVLTGLVTQYQTTLEMLNGAADIPPQARVELLASLADAFNKATSASKKILPETSQLAVALDVLQRLSAFVAESHPQHLAAFAEILEPFGKEMERHYG
Sequence
>894..1088
MANNYEPVKERNALSQRVIAALRNEFTEDELNQLGFPEAMWLAMQVICGPGGAAQVIRLSQIHQ
Sequence
>complement(1060..1302)
MSVKTKLTIDQRIQIARMATDIYMHTFHELTSAKNVIPMSRTVNTNNDAAKEERARIQRSYDWAFDLVASKVTDESETSE
Sequence
>1379..3067
VTRKTTTKDFLLGLAELAASLRRTIEAESVGFDPSAEAIAERRARVLDPVGGYVYFVEHYFPHYVRHADKSELHKYLFARLPEIVASTTSENDAIAAPRGEAKSTLVSQLFNIWCIVCASKHYLVIVMDSIDQAYPMLEAIKAELAYNPRIAMDFPEVAGGGRVWQAGTIVTKNDIKVQVAGSGKKLRGLRHGPFRPDLVVLDDIENDEQVRSPEQRDKLDNWLKKTILPLGGAGAKFDVIYIGTILHYDSVLSRTLKNTLWKTARFKAIIQWPVNMSLWDEWEEILRNNDDKGQWLANAFYQQHKAEMDEGAVVSWSARPILALMLIRARDGHSTFDSEYQNDPVSGEDAPFANCITFWVNRLNEWIFLGACDPSLGRAGGKRDPSALLVGGFNRHTGILDVVEAAIRKRVPDKIISDIIELQRIYRCLCWSVEAVQFQEFLRTELVKRSAATGIPVPARGVTPSSDKILRIESLQPHMANGLIRLHPSQSTLIDQLRHFPMADHDDGPDALHMLWALAVSGFAAFSFTPVPRNNAPDSDDRDSGFHRAGAAGYGFGSGGW
Sequence
>3067..4647
VAQIVDQFGRPFNKEVLSGPQTARTAQIQRHWPEHPSRGLDIRRLPRILEAAERGDIAAQADLFEDMVEKDGHIFSEMAKRKNALLGLAWSIKPPLNATAAEKNMAAMVSEWFQGIPDIHDLILNAADAIGHGFAAQEIERWELEENIWLPVKTVLRPHRWFCTNPEIDDTVRLADGSMGGTELWPFGWMVHAHNAKSGYIAQAGLYRVLVWPYLFKNFSLRDFAEFLEIYGLPARIGTYMASATEEEKNRLLYALVTLGHDAAGIVPEGTNIRFESAANGQAEPFMSMINWCERTASKVILGGTLTSQADGKTSTNALGNVHNEVRNDIRIADARQLEGFFGNVISMLLAINGQTVSRRRQPRFVFDTQDIEDIIKFSTGIKTLVDAGLKSIPVSWVHQKMGIPVPKDDEPVLTPTPAATPAAALSSRPSPYRSFAALSTTSANDISDPAQIALDNARSTPEAINDAMQALIAPLVAALQNGQTPDDALDIIAASYPALDDAQLQQLLAQALFVADVWGRLNADS
Sequence
>4634..5971
MPTANSGDVNLAYAIGLKPEEAIRYFESKGYVIGFNWHDVEARAHATSFTVAGILKQDILTDINSAFKKRLDDGGTQRQFDQQLLPVLEQKGWLGRGLKADEDGVLEGKKLTPRRLKTIFETNMQAAYNAGRYEEQMANVGFRPYFQRVAVMDAHTRPKHAALNGYTARADDPVWRFMYPPDGYHCRCRVRALSQSNVDTRNITIQHSEIIEVEQAWGPNDSRKVPAIRWNGELYTPDAGFGHNPGQGYLAALGQRLLERSATADPHLAALAVQETLGNSPLLTAVSNDVSEFVSNTLLNKQARGQLRHVGALPPAVLDRLAEKGAAVESAVITLTDENLLHAIRDSKDAPLPEELWRHLPEFIYKPKAILYDKQKADAALTYVIDLPQSAGKLVVFIDRVIKARPAGGGKPERITTHLIRTGKVLPAKAFDNPGAYEVLWGSLE
Sequence
>6100..6648
MSSYEIKYNITDFEKGLGELIQRLEHREPLMRELAAAMHDAVEENFASQGRPAWAGWSPRYAQQRQGGKILQKSGRLATSINEYSDNDTATVGTNVVYARIQQEGGTINIPARSQRAYYRQHKDGSVGNRFVKKSKSNFSQWNTIGEYKIKITARPFLHLTEPDVDGMETTAQTYLQRVIDA
Sequence
>6855..7982
MKKKPLIAALSAEINKASLGVIQLFPAGEFRARDGRPTECAAWIMTAEVAQALIAAADAQQTPYVIDYEHQTLRAAKNGQPAPASGWFKKLEWREGTGLFAVDVVWTDSAAQMIADGSYRFISPVFSYDKSGRVLQLLHAALTNTPAVDGMDEVMLAAASLLAATSSTQEDSMDELLERLRWMLNLPITATAEDITAELNKLIDQLASAPAGTAAASFQTLSATPFNLIERLTADAASVAALTAQVANPDPAKWVSVEVMQQSVAEALATANNNVAALAQRQCAELITAALSDGRLLPAQKPWAESLAASSPDSLKAFLEKAPKIAALTTTQTGGQPPAGAPKKEAQDEVIDPAICSLMGVDPADVAQFIKENNR
Sequence
>7979..8374
MSDRNTPHRDGELFAVPVAATTEIFGGHIIAANAAGYAVPATANAAQVTLGVSDGWVDNSTGANGDADAIVRRGRAWLFANSTADAVTQAQVGHDCYVVDSQTVAKTSNSNARPLAGRVQAIADDGVWVLI
Dickeya zeae MK19 DZEMK19_contig34, whole genome shotgun sequence
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Length: 8960 bps
Phages: 1
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Click on a region in the genome above to show details here.
Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Locus 1: PP_00002 (Region 1)
Locus: PP_00002ORF Start: 401
ORF Stop: 901
Strand: Forward
Protein Sequence: MAHPQEIRDKLRRAYIFGQMSLEIAAAQSGVAFGTARRWKKDAQDAGDDWDKLRAAHVMAGGGLEDIGRAVLTGLVTQYQTTLEMLNGAADIPPQARVELLASLADAFNKATSASKKILPETSQLAVALDVLQRLSAFVAESHPQHLAAFAEILEPFGKEMERHYG
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: PP_00002, hypothetical protein, phage(gi448244713), PHAGE_Pseudo_JBD88a_NC_020200
Homolog/Ortholog E-Value: 1.09e-70
Locus 2: PP_00003 (Region 1)
Locus: PP_00003ORF Start: 894
ORF Stop: 1088
Strand: Forward
Protein Sequence: MANNYEPVKERNALSQRVIAALRNEFTEDELNQLGFPEAMWLAMQVICGPGGAAQVIRLSQIHQ
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: PP_00003, hypothetical
Homolog/Ortholog E-Value: N/A
Locus 3: PP_00004 (Region 1)
Locus: PP_00004ORF Start: 1060
ORF Stop: 1302
Strand: Backward
Protein Sequence: MSVKTKLTIDQRIQIARMATDIYMHTFHELTSAKNVIPMSRTVNTNNDAAKEERARIQRSYDWAFDLVASKVTDESETSE
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: PP_00004, hypothetical
Homolog/Ortholog E-Value: N/A
Locus 4: PP_00005 (Region 1)
Locus: PP_00005ORF Start: 1379
ORF Stop: 3067
Strand: Forward
Protein Sequence: VTRKTTTKDFLLGLAELAASLRRTIEAESVGFDPSAEAIAERRARVLDPVGGYVYFVEHYFPHYVRHADKSELHKYLFARLPEIVASTTSENDAIAAPRGEAKSTLVSQLFNIWCIVCASKHYLVIVMDSIDQAYPMLEAIKAELAYNPRIAMDFPEVAGGGRVWQAGTIVTKNDIKVQVAGSGKKLRGLRHGPFRPDLVVLDDIENDEQVRSPEQRDKLDNWLKKTILPLGGAGAKFDVIYIGTILHYDSVLSRTLKNTLWKTARFKAIIQWPVNMSLWDEWEEILRNNDDKGQWLANAFYQQHKAEMDEGAVVSWSARPILALMLIRARDGHSTFDSEYQNDPVSGEDAPFANCITFWVNRLNEWIFLGACDPSLGRAGGKRDPSALLVGGFNRHTGILDVVEAAIRKRVPDKIISDIIELQRIYRCLCWSVEAVQFQEFLRTELVKRSAATGIPVPARGVTPSSDKILRIESLQPHMANGLIRLHPSQSTLIDQLRHFPMADHDDGPDALHMLWALAVSGFAAFSFTPVPRNNAPDSDDRDSGFHRAGAAGYGFGSGGW
Homolog/Ortholog Species: Terminase
Homolog/Ortholog Protein: PP_00005, terminase large subunit, phage(gi849255403), PHAGE_Pseudo_H70_NC_027384
Homolog/Ortholog E-Value: 0.0
Locus 5: PP_00006 (Region 1)
Locus: PP_00006ORF Start: 3067
ORF Stop: 4647
Strand: Forward
Protein Sequence: VAQIVDQFGRPFNKEVLSGPQTARTAQIQRHWPEHPSRGLDIRRLPRILEAAERGDIAAQADLFEDMVEKDGHIFSEMAKRKNALLGLAWSIKPPLNATAAEKNMAAMVSEWFQGIPDIHDLILNAADAIGHGFAAQEIERWELEENIWLPVKTVLRPHRWFCTNPEIDDTVRLADGSMGGTELWPFGWMVHAHNAKSGYIAQAGLYRVLVWPYLFKNFSLRDFAEFLEIYGLPARIGTYMASATEEEKNRLLYALVTLGHDAAGIVPEGTNIRFESAANGQAEPFMSMINWCERTASKVILGGTLTSQADGKTSTNALGNVHNEVRNDIRIADARQLEGFFGNVISMLLAINGQTVSRRRQPRFVFDTQDIEDIIKFSTGIKTLVDAGLKSIPVSWVHQKMGIPVPKDDEPVLTPTPAATPAAALSSRPSPYRSFAALSTTSANDISDPAQIALDNARSTPEAINDAMQALIAPLVAALQNGQTPDDALDIIAASYPALDDAQLQQLLAQALFVADVWGRLNADS
Homolog/Ortholog Species: Portal protein
Homolog/Ortholog Protein: PP_00006, portal protein, phage(gi985760939), PHAGE_Ralsto_RS138_NC_029107
Homolog/Ortholog E-Value: 4.31e-145
Locus 6: PP_00007 (Region 1)
Locus: PP_00007ORF Start: 4634
ORF Stop: 5971
Strand: Forward
Protein Sequence: MPTANSGDVNLAYAIGLKPEEAIRYFESKGYVIGFNWHDVEARAHATSFTVAGILKQDILTDINSAFKKRLDDGGTQRQFDQQLLPVLEQKGWLGRGLKADEDGVLEGKKLTPRRLKTIFETNMQAAYNAGRYEEQMANVGFRPYFQRVAVMDAHTRPKHAALNGYTARADDPVWRFMYPPDGYHCRCRVRALSQSNVDTRNITIQHSEIIEVEQAWGPNDSRKVPAIRWNGELYTPDAGFGHNPGQGYLAALGQRLLERSATADPHLAALAVQETLGNSPLLTAVSNDVSEFVSNTLLNKQARGQLRHVGALPPAVLDRLAEKGAAVESAVITLTDENLLHAIRDSKDAPLPEELWRHLPEFIYKPKAILYDKQKADAALTYVIDLPQSAGKLVVFIDRVIKARPAGGGKPERITTHLIRTGKVLPAKAFDNPGAYEVLWGSLE
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: PP_00007, virion morphogenesis protein, phage(gi985760940), PHAGE_Ralsto_RS138_NC_029107
Homolog/Ortholog E-Value: 1.62e-70
Locus 7: PP_00008 (Region 1)
Locus: PP_00008ORF Start: 6100
ORF Stop: 6648
Strand: Forward
Protein Sequence: MSSYEIKYNITDFEKGLGELIQRLEHREPLMRELAAAMHDAVEENFASQGRPAWAGWSPRYAQQRQGGKILQKSGRLATSINEYSDNDTATVGTNVVYARIQQEGGTINIPARSQRAYYRQHKDGSVGNRFVKKSKSNFSQWNTIGEYKIKITARPFLHLTEPDVDGMETTAQTYLQRVIDA
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: PP_00008, putative virion morphogenesis protein, phage(gi966198713), PHAGE_Pseudo_vB_PaeS_PM105_NC_028667
Homolog/Ortholog E-Value: 4.23e-18
Locus 8: PP_00009 (Region 1)
Locus: PP_00009ORF Start: 6855
ORF Stop: 7982
Strand: Forward
Protein Sequence: MKKKPLIAALSAEINKASLGVIQLFPAGEFRARDGRPTECAAWIMTAEVAQALIAAADAQQTPYVIDYEHQTLRAAKNGQPAPASGWFKKLEWREGTGLFAVDVVWTDSAAQMIADGSYRFISPVFSYDKSGRVLQLLHAALTNTPAVDGMDEVMLAAASLLAATSSTQEDSMDELLERLRWMLNLPITATAEDITAELNKLIDQLASAPAGTAAASFQTLSATPFNLIERLTADAASVAALTAQVANPDPAKWVSVEVMQQSVAEALATANNNVAALAQRQCAELITAALSDGRLLPAQKPWAESLAASSPDSLKAFLEKAPKIAALTTTQTGGQPPAGAPKKEAQDEVIDPAICSLMGVDPADVAQFIKENNR
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: PP_00009, Mu-like prophage I protein, phage(gi985760943), PHAGE_Ralsto_RS138_NC_029107
Homolog/Ortholog E-Value: 3.02e-72
Locus 9: PP_00010 (Region 1)
Locus: PP_00010ORF Start: 7979
ORF Stop: 8374
Strand: Forward
Protein Sequence: MSDRNTPHRDGELFAVPVAATTEIFGGHIIAANAAGYAVPATANAAQVTLGVSDGWVDNSTGANGDADAIVRRGRAWLFANSTADAVTQAQVGHDCYVVDSQTVAKTSNSNARPLAGRVQAIADDGVWVLI
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: PP_00010, putative phosphoesterase, phage(gi100037), PHAGE_Pseudo_JBD25_NC_027992
Homolog/Ortholog E-Value: 3.23e-29
Lysis
Terminase
Portal Protein
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Other
Transposase
Fiber Protein
Plate Protein
tRNA
Plate Protein
tRNA
Download data as .txt file: png_input file_download