Submission Results
Sequence Name: Not Available
GenBank Accession Number: NZ_QUJP01000003.1 open_in_new
GenInfo (GI) Number: 0000000000 open_in_new
Download Results: NZ_QUJP01000003.1.PHASTER.zip
gi|00000000|ref|NZ_QUJP01000003.1| Blautia sp. AM28-10 AM28-10.Scaf3, whole genome shotgun sequence. 299909, gc%: 47.44%
Download summary as .txt file: summary.txt file_download
Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.
Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
---|---|---|---|---|---|---|---|---|
1 | 9.4Kb | incomplete | 40 | 7 | 288914-298402 info_outline | PHAGE_Entero_Tyrion_NC_031077(1) | 49.96% | Show info_outline |
>1 288914-298402 TTATTTTAGGCCGCAAAGCCTTTTTAATAGTTCTTCATCGCTGACCTTATAACGTGCAGC ATTAAGGTGTTCCTTAAGCGGACTGTCATCCGGTACAGCCTGTTCGAGTGCTTTTCGCTT CAACTCCGTATCCGCATGGGCATAGATAAGCGTAGTTTCAAGATTAGAATGGCCCAGCCA TTGAGAAATTAAGGTTAAATCTACTCCATTCTGATACAAGATCATCGCCCAGGAATGACG GAATAAATGCGGATGCACATTTTCAGGCACTTCTTTACAGATTTCACGTGCCTGTTTGCC ATATTTTCTAACCAGTTGCCTTACGTTATCTTCGGTCATGCGTTTTTTCATTCGGCCCCG TGTAACGTAGAACAGATGCTGCTCAGAAAATAAATGTTCCTCTGGATGAAACAGTGCAAG ATATTGTTTCAGGTGCTGCACCACATCATCCCGCAATGGTATTGACCGAGTTTTCGCCCC CTTTCCGTGGATGGTCACTTTAGGATGTCTGCCTAATTGTATATCACAAAGGCGGATGTC AACGAGTTCCTGAACACGTGCCCCGGTTTTATAGAGAAACAGAAGCAGAAATGCGTCTCT TTTTCCTTTTTCCGTGAAAGTGTCGGGCTGCTTCAGGATTGCATTAACAGCGTCTTCACT CATGTGCTCAACAATGGTTTCAGGCTCTTTTGCCTTTTTTACTTTTTGTATTTCCTCTAA ATAGGAAATTACAGTGATGTCCTCTTGTGCTGCATATTTATAGAAAGCACGGATGCAATG CAGACGGTGGTTCCTTGTAGATATACTGCAATTACGTTCTGTTTCGAGATAATCCAAAAA TTCCGAGACAGCATTACGGTCAATCATCTCAAAAGTGATTTCACTTAAAGAGATATTCCG CTTTGTCTTGATGAAATCGAAAAGTAATTCCAAAGACTTACGGTAAGAACGTATTGTATT TGGGCTGCATTTTTGTTCATCCGGCAACGAAACCAGCAGGAAATCGTGGACAAGGGAGAA TAACGGGGTTAACGTGCCCATATGTCCACCTCCATTCCAATGCGGTCAATGTTTTCCCAC TGTACTCCCGGAGATACCATAAGGCGTTCCGGCAGGATGTGGATGTAATAAGCGGTGTCC GAAAACTTTTCATGTCCCATATAAGCACGAAGGTAAGGGAGCATCGCATAAAGATTCCTG CCTTCATCCATCCAGCGTTGCAGAACTGTCGATGCAAATCGGTGGCGGAGATCATATGGC CTTAAACGTGGCAATAGTTTTGGGTCAACTTCTGGATGTGCCGCTGCCCAGCATGATTTT ACAAGTGCGGTCAACTGCCATGATTTCAGGGCAGAGGAGTCTGTATGGATAAAAAAATAT TCATTCCCTTTGTCGAAAATAGCTCTTTGGGAACGGTACTTTTTCAGCAGCAGCAACATA TCATCAGAAGCTACGACGATCCGTTCTTTCCTGCGTTTGGTTTTTGTGATGAAAAGCTCG CCGGTTTTGAAATTGACATGCTCCAGCTTTATGTTTCTGCCCTCGTTTGGTCTTAACCCG CATGAATAGAGCAGCCGCAAAAGGACGGATGCTGTTTCGCGAAAGAATGGGTCATTTTTA TATTCCATCGTATCGGCGGCATGAAACAATGCAGCAAGTTCACTGTCTGTCAGGATGTAT GGCAGATAGTCCGGCGTTTTGGGTACACAACTCATCGGCAGTATATAAGCCGATACGCCG AGATATTTTGCAAATAAGCGTATGGCGGTTGCCTTGCTGCTCAGACAGGAACGGCCTCTT GCGATTTCGTCGTAGAACCAGCCACGGACAACTTCTTTTGTCAGCTCGGTTTGTTCCGGG CAGTGTTCATAACAATACCTGTCGAAATGCTGCAGTTGCTGTTCATGCTCATTGGAGTAG CCCATAGCGGAACGAAACTCAAGATATTCCATGATAGAGGGCCTAAAAGCACTTTTAAAT TCTTTCATAAATGACCGCCCCCTTTTTCCGGCATGAAGCCTTCTAAATTGAGGGCACATT CTTTCAGATGCGTGCTGTCTAAGGAGATATATTGTTTTGTCGGCTCAATGCCGGAATGAC CTAAAACCTGCGAAACCGTAGTGACCGGCACACCAGATATTACCATGTTGGTGCCCACAG CACGCCGCAGCCCATGAAATGTACATTTCGGAAGTCCGAGCTTTTCCCGGTAAACATTAA ATGTCTGATAAGGCAGAGTACGTCCTAACTGTACGGCCGGGGATTTTGCACGTAAAAAAA CAAACGGAAGGTCACTTTTCGGACGGCCATTCAATATATAGTCCTGAATGGCTTCTCCAA CGTCTGTCGTCAAAGGAAGCGCAAGCGTTTTCCCCGTTTTATGTTGTGTGATCCGGATTT CCCCGTTAATCCAGTCAATCGCATCAAAAGTCAGGTTTATGATGTCAACAGACCTTATCC CAGTGACAGCCGCTGTCATAATCATTGCATAATCACGCCTGCCCATAGCGGTGCTACGGT CAATCACATCCAGAACAGCGGCGATTTCATCCAGAGGGACAGGTTTTTTCACCTTATGTT CTGTAGGGGTTACAAAAGACAGCGTATCTGCAAAGCTGTTGCCCGTAATTCCTATTTCAT ATAGATACAAATGCAGCTTTTTAAGAGAACGCTTGATGGTATCAATACTATTGAGTGTCA TGCGCCTGGAACAATCCATGAGATATTTTCTGATAATACTGTCATCCACCCGCGCAAATG AACCAATCCCATTAGCCAAAAGCCATTTGAAATAAGGGTTTGCAACCTGTCTGATACTGC ATTTGGTTTTGTCGTTCCATTCCCCGTAAGCCCTGATACCGGTTAAAAGGTCTTCGTAGT ATGGGGAAAGAGCAGACGGAACCCTCCGGGCATATAAAGTTATAGAGCCTTTTTCATGGT ATTCGGTCAGGTAATCAGCAGTTTTTGTAAGGAACATAAATCGTATTTTCCCGATTTCCT TTTGCTGATAGCGGTTCTCTGCGTCCCGGATAAACAGGGATATAATTTCAGGGCTGTAAC AATCATATCCGTTCTCATGGTGCAGTTGGACAATCTTTTGCAGGGCAAATTCTTTTTCCC GGATACTTCGGTGGTTATATCCATTTTGCAAAAAGATGTCGGCTGTTTGAGCTGCAAGAT TTTCAATCGTTGATTGAATCAAAATAATCACCATCCTTAATGATAGTCAGGCACAAGCCT GCCAATATCATTATGACAGTAACTATTAACAAATGGCAGATACCTTATCAGAGTTATCAG GAATCATGAAGCCAACACATATCTAAAAGCAAGGATTCCGTTCAGTAATTCCTGATAACT CTTTTTTTCTGATAAGGGCGTTTATCATGAATTCATGATAAACGCCCAAATGTATAAAAG TGCTGCTGCCAGTAGCTTGTGTTGATGTTCGCGTAGGAGATCGGGTCCCCGCAATGGATC ATCATCCCGTTACCCACATAGATTCCCACATGGCTTGCGCCGCTGGTATTGTAGGTCCCC TGGAAGAAGATCAGGTCGCCGGGCCTTGCATCGGCGCTTGATACAGGCGTACACACGCCT AAAAGCCCGTCTGCGGTCAGGCGTCCGAAATTCCAGCCCACGCCGCAATGATTGACTACC CAGGAAACATAGCCGGAACAGTCAAAGGAAGTGGAAGGGCTTGCGCCGCCCCATACATAC GGATAGCCTAAATACTTTTCAGCCTCCGCAAGCATAGCCGCAAATTTTTCATCCGCAAGG GCCTCCGGTGGAACATCATAGTCAAAATAATTCCCTCCGCCTCCTGCGCCTGCTGCCGGC AGATGCCGCTCGCTGGTATCGCCGGTATCGGCAAAATACAACGGGTTCCTATACTGTCCG TCAACCAATACCTCCAGGTGCAGGTGCGGCCCGGTGGAGTTTCCGGTGCTGCCGACCTTT GCGATCACATCCCCGGCCTTTACCTCCTGTCCGGCAGATACTAAGATTTGTGAACAGTGG CCGTATTTGGTGGTAAGGGAGTACCCCTCGTAAGCCTCGCCCTCAATGGCGACGCACAGG CCATAGCCGCCCGCGTTTCCTGCCAGCGTGACCGTGCCGTCATGCCCGGCTAAAATCTCC GTGCCCTGGGGCATCCCGATGTCAACGCCGGTATGGTAGTTCTTTTCCCCGCTGATCGGG TGTACCCGGTAGCCGTAGTAGCTGGTGACATAGGGCAGCCAGTTGGTGCCAAACACATTT TTCACATACTGCCGGTTTCCTTTGGTCTGCAATAGAATCTCGCAGATTTCTTTCTGGTCT GCGTCCATGCGTGAAACCACCAGGTTTTCAAGCGGCATGGAAGTAAGCGTTACATTTAAG ATGTGCCACTCATAAGGCACTTTTTCTTCGGTTTCCTCGCCGGTCTCCGGGTCAATGCTT GTTTCTGTCCGGTAGCGGATTTCCGTTTCCTCCGTGAAGGATAGGGAATACTGCCCGTTA AAAAGCTCCCGGAGGACGCTCTCAATCTGTGCATAGGTGAAATCCTGATACGCAGAGGTG AGATACCCCATCAAAACATAAGGGTCATGCTCAATGGGGCCGATATTATAGCGGTATTCG TCATAACCGGGCCGGTCCGATTCCACACGGTTGATCTGCATCTGCAGGTCCGTTTCCCAC TCGGTATATATAAGCTCCGCATTGTTGATGTCCGCATCGTCCGCCAGATAAGTAGAGGCA GCAAGGCTTCCCAGCCCTCCGGTTCCGATATTGGAAAAGGAAGAAAACAGGGATGTAATC AGGAAAAATACCAAAAGGAGCAGAACCACGATTCCGCATATAACCGGGTGGCGCTTGATG GCATGAACCACGCCGGCAGCGATCTTCTCCGTGGTAACGGCGGTGTCCTTTGCACGCTTT CCCGCTTTTTTCGCTTCCCTGGCTGCTTTGGCATACTGGCGTTTTATTTTCTGTTTCTGC CACATCCGGGCAAGAAGATTTTTCTTCAGCTCTGGGTTATCTTGTAATGTCTGCCGGTAG GCAAGCCGGGCATTGGTCCTGGCTGATTTCTGCTGTAATTTTGCCACCCTGCGGTATGGC GCGGTCTTATGCCTGTGGTATGCCATGCGCAGCCCCGACTCGCTTACAAGCTCGGTGCGG TGGGCTGCTTTAATGCCGACATTTTCATTCTCCGCCTGGTAGATTTTTTTGTGGGCGTAG CCAACCGCCATGTTTGTGCCGGCCTTTACCGGGCGCATCGGAGCAGGACCCTTTACATGG GTCCTTTGGGATTTCACCTCCTTTTCAAATTTCAGGCGTTTTTTGACCTTGCCCGTATCA GGATCAGAAGATGTTTCCATCCGCAGCTTGCGGCGGGCAGGCAGGCGGTTTTCCGCCTGT TCCAGCTTTTCCGCTGTCCGTTCCGCTTTCCGTCTGGCTTGGGTGAGCTTTTTATCCGCT GTTTCCGGTGGGAGTTCGTCAGCGGCAAATTCCAGCTTGGAAGGCCGTTTTGGTTCTCCT TCGGCTGCCTCCGGTGGTTTCTCCTTTGGTTCCTCGGCTTTTGCCGCCTCCTGGAAACGC TGCTGGTATTTGTTGCCGTGCTGGTGCATCCGGGAACGGCGATCTGTCTGGCTGGATTCT CCCTGCGTGGAGTGCACTATATCAGAATTGCCGCTGTCAGAATCCTCACGCCAGGAATCC ACATATCTGAAATCCCTCCGGCGCGGTTCCGGTGCAGAAGTTCCCGGTTCCAGAGGGTTC CGTGTTTCAGGTGCCCGTGCCGGCTCATGATCCATATCCCTGCTTTCCAAATGTTCCGGT ATGGAAATATCCGCCTGCTGCGGTACATCCGCTTTGAAAGGCTGTGTATCATCCGCTGCC TGCTGTGCTGCGGTTTCATACCTCCGGCTCCGGGCCGTTCCCGAAGAAGAAGGGGCGTCC CTGACCCGCAGCAGGTTAAAATCCTGTTCGTTCTGCCGGGTGTCCATACGTTCCTCCGCA TGGGAATCACGGACCGGCATCCGGGTATCTTTCTTTTTCCTCTGAAATTCTTTTTCCCGC GGCACTGTTATCACCTCCAGTCATTTTTATTTTCGGGAATTTATGCACCTGCCACTTCAT CAGGCCGTGTTGTGAGTACGCTGTATAACAGGGTGTCTTTCGGAAAATGATCGACAAAGG GGATAATCACATTCCCGAAAAACAGAAGCCCTTCGCCGGGGCCGGAATGGGTCACATAGG AAAGCTGGTGCGGGGAAATCCCAAGCTGCTTTGCCAAAATCTGCCGGTCTCCCTGGGCCT GGTTCAGCATGTAGATAAAATCCGAGTTCTCAAAGATATTCTCGATCTCACGGGAGGCCA GCAGGTCCTTCACATTCTGCGTCAAGCCGCTCGGTATGCCGCCCCATTTACGGAATCTTT TCCAGATTTCCACGCTGAAACTTCCAGTCTGGCCTTTCAAAAGGAGATGGAATTCGTCGA TATAGAACCAGGTCGTCTTGTGCTTCGAGCGATTGGCGGTGACACGGTTCCACACGGCAT CCTGCATAATGAGAAGCCCGATCTCTTTCAGGGCCTTGCCCAGAGACTTCAACTGGAAGC AGAGTACCCGGTGGTTGTTCATGTCAATGTTGGACCGGTGGTTAAATACATTCAGGGAGC CATTGACGTAGATTTCCAGCGCCGTAGCGATATTCTGTGCCTCCGGCTCCGCCTGTTTCA AAAGCAGCTCATACAAGTCGCCCAGGACCGGCATATTTTCCGGGCGCGGGTCCTGCAAAT AATCCCGGTACACAAGCCTCGTGCAGCGGTCAATGATGGTCCTCTCAATCGGAGAAAGCC CTTCCTTGCCGCCGATAATCAGGTCACACAGCGACAGGATAAAATCGCTTTTCAGTGTGA TGGGGTTTTCATCATCCGAATAGTCCAGGTTAATGTCCATCGGATTGATATAGTTGGTGG AAGTCGGGGAAATGTCAATGACCTGCCCCTGGGCTCCAAACTGCTGTACCAGAGGTCCGT ACTCATTTTCCGGGTCTGCAATAATGATGTCATCCTCCGTCAAAAGGAACACGTTGACGA TCTCACGCTTGGCAGAGAAGGACTTGCCGCTGCCGGGCGTTCCCAGGAACAGGCCGTTTG GATTCTTTAAGTTCTTGCGGTTCGCCATAATCAGGTTGTTGCTTAAAGCGTTCAGGCCAT AATAAAGCGCCTCGCCCTCCTGGAACAGCTCGCAGGTCGTAAACGGCACGAAAATGGCGG TGCTGCTTGTCGTAAGCCCACGCTCAATTTCAATCTGGTTCAACCCTAAGGCAAGAGAGG ACATAAGCCCCTGTTCCTGCTGGTAGTCCAGACGTTTCAGGGCACAGTTATACTTCTGCG CAATACCGGAGGCAGACAGAATATCATTAAACAGCTTTTGCCGTTTGGAAGCGATATTCT CCACCAGCACCGTCACAAGAAACATGCGCTCATTCCGGCTCTGCAAATCCTGTAAGAGAT TCTTTGCTTCTTCGCCGTAAGTGGCAAGGTCGGTAGGTATGATGTCCATGTCATAACCGG CACGGACCGCTTTCTTCTGTTCCTCAATGGTCATTTTCTGCAGATCGGACATCTTGCGTT TGATGTTCTTGATCGCCTGGGCCTGGTCAATAGACTGGATATGCAGGTTCACAGTCACGG CGTCATCCAGGTCTAAAAGCTCCGCCAGCAGCCGGTCCGTCAGTTCCGGCGCTAAAATCT GCAAAAAGGACACCGCCCCGGAATGGTCGGCCACCCGGAAGGTCTTTCCGTCATTTGAGA ACGACAGGCCGGAGGGCGCAATATAATCCTTTGTGGAGAGCCCGGTTTTCGGCAGGTCCG CCCAGGTAAAATGAAACTTTTCCTGCCCGTCCGGGTGTAGCTGGCTGTGAAGGAGCTCCA GGCGATCCAGCCCGTCTAACGGCTTTGCCTGTGCTCCCAGGGCTTTGAAATTTGCCAGCA CATCAGCCTCGATCCGCTCCAGGCGCATCTTCGCAGTGCGGAGGTCGTCAGCCTCAATCC CAAAGGTGATATATTTCCGCTTTGTAAGGCCGTTGTTGCCTTTTTGGAGCTGGCTCTTTA ACATATCCCCATACTCTCTGCGGATTCCGTCATATTCGTCGCCGCGGATGGGAATGTCGA TACTGCGGGCAAAATCCTGCATATTGGCCCGCTGGTTGATGAAAGTAAGCTGCACATGGA TCGAAGCGTCAAAATAATTGAGGAAATCACAGTAGCCCTCAAAAATCTGCGCTTTGTCAT CCGCCTGTGCAAGCTGGTAGTTAATATCAAAAAACTGCACCGTCTTGGTGTAGAGCTTAT CCGTCAGCCGGCAGATTCCATCCCGGTACATTTCCTTATAGGGAATACTCTGCTGGACCG TCTGCGGGGCGTCCGTTTTCAGCCCGGCAAAAAAGCCGCCCTTTTTAGGCGGCCTGGTGC GGACAGTCTTATTTCCGCTTGTCTTTGCGTCGGCCCTGGTCTTTTTTGCCTGCCTGATGT TTCTTTGCAGACGTTTTTCCTGGGCCTCCTGCTGTTTGGTTTTTGGCAATCCTCGTAACC TCCTTCTTTGACATGGATTTATACAGGTTTTCCGTCCGGTATGGCCGTTTCTTCGGCCAG AGCTTATGGCGGAGCCTGTTTTTCAGAAGTTTCTCCGCCGGCTGTCCGTCCCGCTCATAC ATGGCGAAAAAGAAAAAGGGCATCATAAGCCCGATCATCAACAGCACTGCCGCCGAGTTG CCGATAGCGCCGCGGGTAAGGAAATATACCGGCAGCCCCACCAGCGCGGCCAGGCTGAAA CAAATGAGCTGGCGCTTCGTCAGGTTAAACGCCAGCTTGGTCTTGACTTTTGTTAAGTCT TTGGGTACGGGTACATAGGGCATGTAAATTCACCTCCATTCATGCTGTATCTTACTGATT CCGTTCCTGCATCGTGACCGTGGATTCCACTTCATTGCCCCACACATCCCAGCCGGGGGT CTGCTGTCTTGCAAAAAGCTCTACCCTGGGCTGGTCGCCCATGAGCTTCACAATCTTATC CCGTACCTCGTCCGGCTTTTTGCTGTGCTGCTCGATATGGGAGATCACAAACTGGTGGAT TCCCGCGCACTGGCGTTTCGGGTGCCCCCTGGTCGCCAGTAAGCACACCTCCGCATTAGA GCGGGTCCAGAATCCCATCCCATAAAACCAGGAATCCGCTTTCCGGTTCTGTTTCAGCCA GAGGAAGGCCAGCGTCTTATATTTGAATCCCCATGCTTCGATCACCCGGAAGGCTTCATT GAGCTGTGGGAAGGTGGCCCATAGAAAAAGCGCACTGTCTCTGGCCGCAAGGTCTGTAAC CGGCAGTGCGCATATTTCTTCTATGCTCATGGTGGGGTAATGGTTTTCCGCCACCCCATT GCCGCGTTTCATATCGTAACGCCAGGGCGGGTCTGCGTACACGATGCCATATTTTCCAGC CTCCGGCAT
Region | 1 |
Region Length | 9.4Kb |
Completeness(score) | incomplete(40) |
Specific Keyword | recombinase,integrase |
Region Position | 288914-298402 |
# tRNA | 0 |
# Total Proteins | 7 |
# Phage Hit Proteins | 6 |
# Hypothetical Proteins | 0 |
Phage + Hypothetical Protein % | 85.7% |
# Bacterial Proteins | 1 |
Attachment Site | no |
# Phage Species | 5 |
Most Common Phage Name(hit genes count) | PHAGE_Entero_Tyrion_NC_031077(1) PHAGE_Lactob_phig1e_NC_004305(1) PHAGE_Mannhe_vB_MhS_1152AP2_NC_028956(1) PHAGE_Strept_PH10_NC_012756(1) PHAGE_Haemop_Aaphi23_NC_004827(1) PHAGE_Brevib_Jenst_NC_028805(1) PHAGE_Mycoba_Toto_NC_028906(1) PHAGE_Plankt_PaV_LD_NC_016564(1) PHAGE_Lister_B054_NC_009813(1) PHAGE_Bacill_Mgbh1_NC_041879(1) PHAGE_Clostr_phi3626_NC_003524(1) PHAGE_Mannhe_vB_MhS_535AP2_NC_028853(1) PHAGE_Mycoba_SirDuracell_NC_041987(1) PHAGE_Mycoba_Pumpkin_NC_042027(1) PHAGE_Bacill_G_NC_023719(1) PHAGE_Salmon_SPN1S_NC_016761(1) PHAGE_Aggreg_S1249_NC_013597(1) PHAGE_Salmon_epsilon15_NC_004775(1) PHAGE_Rhodoc_Trina_NC_042040(1) |
First Most Common Phage # | 2 |
First Most Common Phage % | 14.28% |
GC % | 49.96% |
Region: | The number assigned to the region. |
Region Length: | The length of the sequence of that region (in bp). |
Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
Region Position: | The start and end positions of the region on the bacterial chromosome. |
# tRNA: | The number of tRNA genes present in the region. |
# Total Proteins: | The number of ORFs present in the region. |
# Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
# Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
# Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
Attachment Site: | The putative phage attachment site. |
# Phage Species: | The number of different phages that have similar proteins to those in the region. |
Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
GC %: | The percentage of GC nucleotides of the region. |
Questionable (score 70-90)
Incomplete (score < 70)
Region: | The number assigned to the region. |
Region Length: | The length of the sequence of that region (in bp). |
Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
Score: | The score of the region based on the above criteria. |
# Total Proteins: | The number of ORFs present in the region. |
Region Position: | The start and end positions of the region on the bacterial chromosome. |
Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi|00000000|ref|NZ_QUJP01000003.1| Blautia sp. AM28-10 AM28-10.Scaf3, whole genome shotgun sequence. 299909, gc%: 47.44%
Download details as .txt file: detail.txt file_download
Hits against Bacterial Database or GenBank File
Region 1, total 7 CDS
# | CDS Position | BLAST Hit | E-Value | Sequence |
---|---|---|---|---|
1 | complement(288914..289954) | PHAGE_Brevib_Jenst_NC_028805: putative recombinase XerD; DW731_RS07760; phage(gi971744895) | 3.08e-22 | Showinfo_outline |
2 | complement(289942..290901) | PHAGE_Brevib_Jenst_NC_028805: putative recombinase XerD; DW731_RS07765; phage(gi971744895) | 8.04e-05 | Showinfo_outline |
3 | complement(290898..292115) | PHAGE_Haemop_Aaphi23_NC_004827: putative integrase; DW731_RS07770; phage(gi62912537) | 9.64e-10 | Showinfo_outline |
4 | complement(292306..294978) | PHAGE_Clostr_phi3626_NC_003524: Gp15 protein; DW731_RS07775; phage(gi20065978) | 5.02e-14 | Showinfo_outline |
5 | complement(295014..297284) | PHAGE_Bacill_G_NC_023719: gp155; DW731_RS07780; phage(gi593777612) | 4.67e-09 | Showinfo_outline |
6 | complement(297382..297816) | PrgI family protein; DW731_RS07785 | 0.0 | Showinfo_outline |
7 | complement(297845..298402) | PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: methyltransferase; DW731_RS07790; phage(gi971749648) | 5.55e-74 | Showinfo_outline |
>complement(288914..289954)
BlautiaspAM2810MGTLTPLFSLVHDFLLVSLPDEQKCSPNTIRSYRKSLELLFDFIKTKRNISLSEITFEMIDRNAVSEFLDYLETERNCSISTRNHRLHCIRAFYKYAAQEDITVISYLEEIQKVKKAKEPETIVEHMSEDAVNAILKQPDTFTEKGKRDAFLLLFLYKTGARVQELVDIRLCDIQLGRHPKVTIHGKGAKTRSIPLRDDVVQHLKQYLALFHPEEHLFSEQHLFYVTRGRMKKRMTEDNVRQLVRKYGKQAREICKEVPENVHPHLFRHSWAMILYQNGVDLTLISQWLGHSNLETTLIYAHADTELKRKALEQAVPDDSPLKEHLNAARYKVSDEELLKRLCGLK
>complement(289942..290901)
BlautiaspAM2810MKEFKSAFRPSIMEYLEFRSAMGYSNEHEQQLQHFDRYCYEHCPEQTELTKEVVRGWFYDEIARGRSCLSSKATAIRLFAKYLGVSAYILPMSCVPKTPDYLPYILTDSELAALFHAADTMEYKNDPFFRETASVLLRLLYSCGLRPNEGRNIKLEHVNFKTGELFITKTKRRKERIVVASDDMLLLLKKYRSQRAIFDKGNEYFFIHTDSSALKSWQLTALVKSCWAAAHPEVDPKLLPRLRPYDLRHRFASTVLQRWMDEGRNLYAMLPYLRAYMGHEKFSDTAYYIHILPERLMVSPGVQWENIDRIGMEVDIWAR
>complement(290898..292115)
BlautiaspAM2810MIQSTIENLAAQTADIFLQNGYNHRSIREKEFALQKIVQLHHENGYDCYSPEIISLFIRDAENRYQQKEIGKIRFMFLTKTADYLTEYHEKGSITLYARRVPSALSPYYEDLLTGIRAYGEWNDKTKCSIRQVANPYFKWLLANGIGSFARVDDSIIRKYLMDCSRRMTLNSIDTIKRSLKKLHLYLYEIGITGNSFADTLSFVTPTEHKVKKPVPLDEIAAVLDVIDRSTAMGRRDYAMIMTAAVTGIRSVDIINLTFDAIDWINGEIRITQHKTGKTLALPLTTDVGEAIQDYILNGRPKSDLPFVFLRAKSPAVQLGRTLPYQTFNVYREKLGLPKCTFHGLRRAVGTNMVISGVPVTTVSQVLGHSGIEPTKQYISLDSTHLKECALNLEGFMPEKGGGHL
>complement(292306..294978)
BlautiaspAM2810MPREKEFQRKKKDTRMPVRDSHAEERMDTRQNEQDFNLLRVRDAPSSSGTARSRRYETAAQQAADDTQPFKADVPQQADISIPEHLESRDMDHEPARAPETRNPLEPGTSAPEPRRRDFRYVDSWREDSDSGNSDIVHSTQGESSQTDRRSRMHQHGNKYQQRFQEAAKAEEPKEKPPEAAEGEPKRPSKLEFAADELPPETADKKLTQARRKAERTAEKLEQAENRLPARRKLRMETSSDPDTGKVKKRLKFEKEVKSQRTHVKGPAPMRPVKAGTNMAVGYAHKKIYQAENENVGIKAAHRTELVSESGLRMAYHRHKTAPYRRVAKLQQKSARTNARLAYRQTLQDNPELKKNLLARMWQKQKIKRQYAKAAREAKKAGKRAKDTAVTTEKIAAGVVHAIKRHPVICGIVVLLLLVFFLITSLFSSFSNIGTGGLGSLAASTYLADDADINNAELIYTEWETDLQMQINRVESDRPGYDEYRYNIGPIEHDPYVLMGYLTSAYQDFTYAQIESVLRELFNGQYSLSFTEETEIRYRTETSIDPETGEETEEKVPYEWHILNVTLTSMPLENLVVSRMDADQKEICEILLQTKGNRQYVKNVFGTNWLPYVTSYYGYRVHPISGEKNYHTGVDIGMPQGTEILAGHDGTVTLAGNAGGYGLCVAIEGEAYEGYSLTTKYGHCSQILVSAGQEVKAGDVIAKVGSTGNSTGPHLHLEVLVDGQYRNPLYFADTGDTSERHLPAAGAGGGGNYFDYDVPPEALADEKFAAMLAEAEKYLGYPYVWGGASPSTSFDCSGYVSWVVNHCGVGWNFGRLTADGLLGVCTPVSSADARPGDLIFFQGTYNTSGASHVGIYVGNGMMIHCGDPISYANINTSYWQQHFYTFGRLS
>complement(295014..297284)
BlautiaspAM2810MYRDGICRLTDKLYTKTVQFFDINYQLAQADDKAQIFEGYCDFLNYFDASIHVQLTFINQRANMQDFARSIDIPIRGDEYDGIRREYGDMLKSQLQKGNNGLTKRKYITFGIEADDLRTAKMRLERIEADVLANFKALGAQAKPLDGLDRLELLHSQLHPDGQEKFHFTWADLPKTGLSTKDYIAPSGLSFSNDGKTFRVADHSGAVSFLQILAPELTDRLLAELLDLDDAVTVNLHIQSIDQAQAIKNIKRKMSDLQKMTIEEQKKAVRAGYDMDIIPTDLATYGEEAKNLLQDLQSRNERMFLVTVLVENIASKRQKLFNDILSASGIAQKYNCALKRLDYQQEQGLMSSLALGLNQIEIERGLTTSSTAIFVPFTTCELFQEGEALYYGLNALSNNLIMANRKNLKNPNGLFLGTPGSGKSFSAKREIVNVFLLTEDDIIIADPENEYGPLVQQFGAQGQVIDISPTSTNYINPMDINLDYSDDENPITLKSDFILSLCDLIIGGKEGLSPIERTIIDRCTRLVYRDYLQDPRPENMPVLGDLYELLLKQAEPEAQNIATALEIYVNGSLNVFNHRSNIDMNNHRVLCFQLKSLGKALKEIGLLIMQDAVWNRVTANRSKHKTTWFYIDEFHLLLKGQTGSFSVEIWKRFRKWGGIPSGLTQNVKDLLASREIENIFENSDFIYMLNQAQGDRQILAKQLGISPHQLSYVTHSGPGEGLLFFGNVIIPFVDHFPKDTLLYSVLTTRPDEVAGA
>complement(297382..297816)
BlautiaspAM2810MPYVPVPKDLTKVKTKLAFNLTKRQLICFSLAALVGLPVYFLTRGAIGNSAAVLLMIGLMMPFFFFAMYERDGQPAEKLLKNRLRHKLWPKKRPYRTENLYKSMSKKEVTRIAKNQTAGGPGKTSAKKHQAGKKDQGRRKDKRK
>complement(297845..298402)
BlautiaspAM2810MPEAGKYGIVYADPPWRYDMKRGNGVAENHYPTMSIEEICALPVTDLAARDSALFLWATFPQLNEAFRVIEAWGFKYKTLAFLWLKQNRKADSWFYGMGFWTRSNAEVCLLATRGHPKRQCAGIHQFVISHIEQHSKKPDEVRDKIVKLMGDQPRVELFARQQTPGWDVWGNEVESTVTMQERNQ
Questionable (score 70-90)
Incomplete (score < 70)
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ORF Start: 288914
ORF Stop: 289954
Strand: Backward
Protein Sequence: MGTLTPLFSLVHDFLLVSLPDEQKCSPNTIRSYRKSLELLFDFIKTKRNISLSEITFEMIDRNAVSEFLDYLETERNCSISTRNHRLHCIRAFYKYAAQEDITVISYLEEIQKVKKAKEPETIVEHMSEDAVNAILKQPDTFTEKGKRDAFLLLFLYKTGARVQELVDIRLCDIQLGRHPKVTIHGKGAKTRSIPLRDDVVQHLKQYLALFHPEEHLFSEQHLFYVTRGRMKKRMTEDNVRQLVRKYGKQAREICKEVPENVHPHLFRHSWAMILYQNGVDLTLISQWLGHSNLETTLIYAHADTELKRKALEQAVPDDSPLKEHLNAARYKVSDEELLKRLCGLK
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: DW731_RS07760, putative recombinase XerD, phage(gi971744895), PHAGE_Brevib_Jenst_NC_028805
Homolog/Ortholog E-Value: 3.08e-22
ORF Start: 289942
ORF Stop: 290901
Strand: Backward
Protein Sequence: MKEFKSAFRPSIMEYLEFRSAMGYSNEHEQQLQHFDRYCYEHCPEQTELTKEVVRGWFYDEIARGRSCLSSKATAIRLFAKYLGVSAYILPMSCVPKTPDYLPYILTDSELAALFHAADTMEYKNDPFFRETASVLLRLLYSCGLRPNEGRNIKLEHVNFKTGELFITKTKRRKERIVVASDDMLLLLKKYRSQRAIFDKGNEYFFIHTDSSALKSWQLTALVKSCWAAAHPEVDPKLLPRLRPYDLRHRFASTVLQRWMDEGRNLYAMLPYLRAYMGHEKFSDTAYYIHILPERLMVSPGVQWENIDRIGMEVDIWAR
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: DW731_RS07765, putative recombinase XerD, phage(gi971744895), PHAGE_Brevib_Jenst_NC_028805
Homolog/Ortholog E-Value: 8.04e-05
ORF Start: 290898
ORF Stop: 292115
Strand: Backward
Protein Sequence: MIQSTIENLAAQTADIFLQNGYNHRSIREKEFALQKIVQLHHENGYDCYSPEIISLFIRDAENRYQQKEIGKIRFMFLTKTADYLTEYHEKGSITLYARRVPSALSPYYEDLLTGIRAYGEWNDKTKCSIRQVANPYFKWLLANGIGSFARVDDSIIRKYLMDCSRRMTLNSIDTIKRSLKKLHLYLYEIGITGNSFADTLSFVTPTEHKVKKPVPLDEIAAVLDVIDRSTAMGRRDYAMIMTAAVTGIRSVDIINLTFDAIDWINGEIRITQHKTGKTLALPLTTDVGEAIQDYILNGRPKSDLPFVFLRAKSPAVQLGRTLPYQTFNVYREKLGLPKCTFHGLRRAVGTNMVISGVPVTTVSQVLGHSGIEPTKQYISLDSTHLKECALNLEGFMPEKGGGHL
Homolog/Ortholog Species: Integrase
Homolog/Ortholog Protein: DW731_RS07770, putative integrase, phage(gi62912537), PHAGE_Haemop_Aaphi23_NC_004827
Homolog/Ortholog E-Value: 9.64e-10
ORF Start: 292306
ORF Stop: 294978
Strand: Backward
Protein Sequence: MPREKEFQRKKKDTRMPVRDSHAEERMDTRQNEQDFNLLRVRDAPSSSGTARSRRYETAAQQAADDTQPFKADVPQQADISIPEHLESRDMDHEPARAPETRNPLEPGTSAPEPRRRDFRYVDSWREDSDSGNSDIVHSTQGESSQTDRRSRMHQHGNKYQQRFQEAAKAEEPKEKPPEAAEGEPKRPSKLEFAADELPPETADKKLTQARRKAERTAEKLEQAENRLPARRKLRMETSSDPDTGKVKKRLKFEKEVKSQRTHVKGPAPMRPVKAGTNMAVGYAHKKIYQAENENVGIKAAHRTELVSESGLRMAYHRHKTAPYRRVAKLQQKSARTNARLAYRQTLQDNPELKKNLLARMWQKQKIKRQYAKAAREAKKAGKRAKDTAVTTEKIAAGVVHAIKRHPVICGIVVLLLLVFFLITSLFSSFSNIGTGGLGSLAASTYLADDADINNAELIYTEWETDLQMQINRVESDRPGYDEYRYNIGPIEHDPYVLMGYLTSAYQDFTYAQIESVLRELFNGQYSLSFTEETEIRYRTETSIDPETGEETEEKVPYEWHILNVTLTSMPLENLVVSRMDADQKEICEILLQTKGNRQYVKNVFGTNWLPYVTSYYGYRVHPISGEKNYHTGVDIGMPQGTEILAGHDGTVTLAGNAGGYGLCVAIEGEAYEGYSLTTKYGHCSQILVSAGQEVKAGDVIAKVGSTGNSTGPHLHLEVLVDGQYRNPLYFADTGDTSERHLPAAGAGGGGNYFDYDVPPEALADEKFAAMLAEAEKYLGYPYVWGGASPSTSFDCSGYVSWVVNHCGVGWNFGRLTADGLLGVCTPVSSADARPGDLIFFQGTYNTSGASHVGIYVGNGMMIHCGDPISYANINTSYWQQHFYTFGRLS
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: DW731_RS07775, Gp15 protein, phage(gi20065978), PHAGE_Clostr_phi3626_NC_003524
Homolog/Ortholog E-Value: 5.02e-14
ORF Start: 295014
ORF Stop: 297284
Strand: Backward
Protein Sequence: MYRDGICRLTDKLYTKTVQFFDINYQLAQADDKAQIFEGYCDFLNYFDASIHVQLTFINQRANMQDFARSIDIPIRGDEYDGIRREYGDMLKSQLQKGNNGLTKRKYITFGIEADDLRTAKMRLERIEADVLANFKALGAQAKPLDGLDRLELLHSQLHPDGQEKFHFTWADLPKTGLSTKDYIAPSGLSFSNDGKTFRVADHSGAVSFLQILAPELTDRLLAELLDLDDAVTVNLHIQSIDQAQAIKNIKRKMSDLQKMTIEEQKKAVRAGYDMDIIPTDLATYGEEAKNLLQDLQSRNERMFLVTVLVENIASKRQKLFNDILSASGIAQKYNCALKRLDYQQEQGLMSSLALGLNQIEIERGLTTSSTAIFVPFTTCELFQEGEALYYGLNALSNNLIMANRKNLKNPNGLFLGTPGSGKSFSAKREIVNVFLLTEDDIIIADPENEYGPLVQQFGAQGQVIDISPTSTNYINPMDINLDYSDDENPITLKSDFILSLCDLIIGGKEGLSPIERTIIDRCTRLVYRDYLQDPRPENMPVLGDLYELLLKQAEPEAQNIATALEIYVNGSLNVFNHRSNIDMNNHRVLCFQLKSLGKALKEIGLLIMQDAVWNRVTANRSKHKTTWFYIDEFHLLLKGQTGSFSVEIWKRFRKWGGIPSGLTQNVKDLLASREIENIFENSDFIYMLNQAQGDRQILAKQLGISPHQLSYVTHSGPGEGLLFFGNVIIPFVDHFPKDTLLYSVLTTRPDEVAGA
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: DW731_RS07780, gp155, phage(gi593777612), PHAGE_Bacill_G_NC_023719
Homolog/Ortholog E-Value: 4.67e-09
ORF Start: 297382
ORF Stop: 297816
Strand: Backward
Protein Sequence: MPYVPVPKDLTKVKTKLAFNLTKRQLICFSLAALVGLPVYFLTRGAIGNSAAVLLMIGLMMPFFFFAMYERDGQPAEKLLKNRLRHKLWPKKRPYRTENLYKSMSKKEVTRIAKNQTAGGPGKTSAKKHQAGKKDQGRRKDKRK
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: DW731_RS07785, PrgI family protein
Homolog/Ortholog E-Value: N/A
ORF Start: 297845
ORF Stop: 298402
Strand: Backward
Protein Sequence: MPEAGKYGIVYADPPWRYDMKRGNGVAENHYPTMSIEEICALPVTDLAARDSALFLWATFPQLNEAFRVIEAWGFKYKTLAFLWLKQNRKADSWFYGMGFWTRSNAEVCLLATRGHPKRQCAGIHQFVISHIEQHSKKPDEVRDKIVKLMGDQPRVELFARQQTPGWDVWGNEVESTVTMQERNQ
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: DW731_RS07790, methyltransferase, phage(gi971749648), PHAGE_Mannhe_vB_MhS_535AP2_NC_028853
Homolog/Ortholog E-Value: 5.55e-74
Terminase
Portal Protein
Coat Protein
Tail Shaft
Integrase
Phage-like Protein
Other
Transposase
Plate Protein
tRNA
Download data as .txt file: png_input file_download