Submission Results
Sequence Name: Not Available
GenBank Accession Number: QTVJ01000003.1 open_in_new
GenInfo (GI) Number: 0000000000 open_in_new
Download Results: QTVJ01000003.1.PHASTER.zip
gi|00000000|ref|QTVJ01000003.1| Roseburia sp. AF34-16 AF34-16.Scaf3, whole genome shotgun 391661, gc%: 40.59%
Download summary as .txt file: summary.txt file_download
Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.
| Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
|---|---|---|---|---|---|---|---|---|
| 1 | 9.9Kb | incomplete | 10 | 10 | 162707-172699 info_outline | PHAGE_Entero_phi92_NC_023693(4) | 40.38% | Show info_outline |
Region DNA
>1 162707-172699 ATGAGCAGAATGTTTGGAACAGATGGTGTAAGAGGTGTTGCAGGAGCGGAGCTGACCATT GAACTGGCAACAAAGCTTGGGCAGGCAGGTGCCTATGTGCTGACGAAAGAGCAGGAACAT CAGCCGACATTAATTGTAGGATGTGATACAAGAATTTCAGGTGGAATGCTTGCCAATGCA CTGATGGCAGGAATCTGTTCTGTAGGAGCCAATGCAATCTATGCAGGGGTAATGCCGACA CCGGCGATTGCCTATCTGACCAGAAAACATAAAGTAGATGCAGGCGTTGTGATTTCCGCA TCCCATAATCCGATGGAATTTAACGGAATCAAATTCTTTAATGGAGACGGATATAAGCTT TCTGATACGTTGGAGGATGAAATCGAAGAGTTGATCCGCAATAATATGAAAGATGTTGTA CTGCCGATTGGATCCGGTGTGGGAAGAATTGACTATCGTTTTGATTTGCGTGATGAATAT GTGAAATTCATGAAGAAATGTGTGCCGGTTGATTTGACCGGTATGAAGATTGTGATAGAC TGTGCAGAGGGTGCATCCTACTATACATCGGTTAAGACATTAAAAGACCTGGGTGCAGAT CTGGTTGCTATCCATACGAAGCCGGATGGAACCAATATCAATGCCAACTGCGGTTCCACC CATATGGAAGAACTTCAGGCAAGGGTTGTTTATGAAAAAGCAGACGTTGGCCTTGCATTT GATGGCGATGCTGACCGTATGCTTGCGGTAGATGAAAAAGGTAACCTGGTGGATGGCGAC CAGCTTATGGCAATCTGTGGATGCCATATGAAGAAAAAAGGAACTTTAAAGAAAAATACC ATTGTAGTAACCGTTATGACCAATCTTGGCTTCAGTCTGATGGGAGAGCGGGAAGGCATC CATGTAGAGAAAACCAAGGTCGGAGACAGATATGTCCTTGAAAATATGCTGGAGAATGGC TATAATATCGGGGGTGAGCAGTCCGGACATATTATATTTTTAGATGATAATACAACCGGT GACGGACTTCTTTCCGGACTTCATTTATTACAGGTAATGAAGGAAACCGGCAGGAAATTA TCTGAGCTGGCAGAGGTGATGGAAGTATTGCCGCAGGCACTTGTGAATGCCAAAGTGCCG AATCACAAGAAAGAAAAATTCATGGAATATACTGAGATTGCAGAGGCAATCAAGGCATTG GAAGAGAAATTCAATGGAGAAGGAAGAGTGCTGATTCGTCCATCCGGAACCGAGCCGCTG GTAAGAGTTATGATTGAGGGAAAGAACCAGAGCGAGATTGAAGAAGAAGCACAGAAGCTG GCTGAATTAATTACCAACACAATGCTGTAATCAGGAGGGGAATAGAAATGGTAAGTCAGA AAGTTAAAATAAAGAATCCGACAGGATTACATTTGCGTCCGGCAGGAATACTCTGTAAGG AAGCAATGCAGTATAAATCGTTAGTAACATTTCATTATCGCGGAAATACCGCTAATGCCA AAAGTGTTTTAAGTGTACTGGGTGCGTGCATCAAATTTGGAGATGAAATCGAATTTGTCT GCGAAGGTGATGATGAGGACGAAGCATTAAAGGCAATGGTAGAAGCCGTAGAAAGTGGAT TAGGAGAATAAAAGATGAAAAAAATACTGGTAACTGGATGTAATGGACAGTTGGGAAGAG CAATTCGCAAGGAATATGCAGCAAGTGATGTGGAATTTATCAATACAGATGTAGTAGAGG GAGAAGGTGTTGTATCTCTTGATATTACTGATGTAGATGCAGTACTGAAGCTGGTACGTG CAGAGAAACCGGATGTTATCATCAACTGCGCCGCACATACCAATGTAGACAAGTGTGAGG AACAGTGGGATCTTGCATATAAGATTAATGCAATCGGACCAAGAAACTTAAGTATTGCAG CAACCGAAGCAGATGCAAAAATGATTCATGTATCTACGGATTATGTTTTTGAAGGAAATG GGACAAGACCATACACAGAGTTTGATGCACCAAATCCGGTAAGTGCTTATGGAAAGACTA AGTTAGAGGGTGAAAACTTTGTAAAGGAATTTGCAAAGAAACATTTTATCTTAAGAACAG CATGGCTTTATGGGGATGGAAAGAACTTTGTCAAGACAATGCTGGCATTGGCAGAGAACC ATGATGAATTAAATGTAGTCTGTGACCAGGTGGGAACACCTACCAGCGCAGTGGAATTAG CAAAAATGATTCATTATCTGGAAGGCACAGAGAATTATGGAACCTTCCATGCAACCTGTG AAGGAGATACCAACTGGGCAGATTTTGCAGAAGCAATCTTCAAAAGAGCAGGAAAGAATG TAAAAGTAAATCATGTAACCAGTAAGCAGTACAAAGAGATGAATCCGGCATCCGCTAACA GACCGGCATACTCTATCTTGGAGGATTATATGATTAAGCTTACCAGTGACTTTGTAATGG CAGACTGGCAGGATGCACTGGATGTCTATATGAAAGAACTGTTGGGATAATAGGTGAAAA AATGGAACCATTAGTAAGCGTATGTATTCCGGCATATAATAATGCGGAATACATTAAAGA TACGATTGATTCAATTTTAAATCAGACATATCAGAATATAGAGCTTGTAATTGTGGATGA TAATTCAAAAGATAATACTTATGAACTGATTCAGGAAATCGGGGATGAGAGGATTAAGCT TTATCATAATGATAAGAATCTTGGAATGTCAGGAAACTGGAACCGCTGTCTTTCCTTATG CACCGGTAAATATGCAAAGCTTGTCTGTGCAGATGATATTTTATCGCCGGATGCATTGAA GCGGGAAGTAGATGCTTTAGAGGCAAATCCTACAGCAGTGATTGCGGAAAGTGATACCAA GCTGATTGATTTAAATGGAAAAGGAAAAGGCTTTTATAAACGCTATAAGAAGAGCGGACT GGTAGATGGAAAAGAAATCAGCCGGAAGGGCTTCTTTTCACAGGATTATTTCGGAGCACC ACAGGCAAATACTTTCCGGAGAGATGTGGCAGAGAAAATCGGAGGATTTGATACAGATTA TACCTATATCTTAGACTATGATTTCTTTGTTTCCCTGGCATGTGAAGGCGATGTTTATAT CATACACGAACCACTGAATTTCTTCCGTGTGCGAAAAGGTTCAAATACCGGAGAAGTTAT GGGGGGCAACAAGGAAAAAACAAAAGTATATGTAGAGGAACATCTGCATTTACTGGAGAA AAACAAAGAACGCTTGAAACTGACACCGAAAGATATCAGACGCAGTGTAATGATCCGGAA GTTCCGTTGCTTTGCGGCATCTGTATATCTGAAACTGTTTGTGCATAAATAAGCGAAAGG GGACTAAAATGGATAAAATTGCAGTATTGATTCCCTGCTATAACGAGAGTAAAACAATCG TAAAGGTAGTAGAGGATTTTAAACGGGTAATTCCGGAAGCTGTTATTTATGTATATGATA ATAATTCCAATGACGGAACGGACGAGCTCGCAAGAAGTGCCGGTGCGGTCGTACGTTATG AATATCAGCAGGGAAAAGGAAATGTTATTCGAAGAATGTTCCGTGAGATTGATGCGGAAT GTTATATCATGACAGATGGAGATGATACCTATCCGGCAGAATCAGCACCGGAGATGATAA AACAGGTATTAGAGCATGGAGCTGATATGGTAGTGGGAGACAGACTTTCTTCAACCTATT TTCAGGAGAATACCAGACCATTCCATAACTTTGGTAATTCACTGGTCAGGAAATCCATTA ATCTGTTCTTCCGGACGGACATTAAAGATATTATGACAGGTTATCGTGCTTTCAGTTATC AGTTTGTAAAATCATTCCCGGTATTATCCAAGGGATTTGAAATTGAAACAGAAATGAGCA TTCATGCAGCAGATAAGAATATGCAGGTAGACAATGTGATTATTGAGTACCGTGACAGAC CGGAGGGAAGTGTATCCAAGCTGAATACCTATTCGGATGGATTTAAGGTACTGCGTACCA TTGCAAGACTGTACCGGACTTATAAGCCAATGTCATTCTTTGGCATTATTGCATTTATAC TGGCTGCTCTTGGAGTTGGTTTCCTGATACCGGTATTGGTAGTATATGCAAAGACCGGAA TGGTGCCGAACTTCCCGACTTTATTTGCTTGCTGTTTTACGATATTGGCAGCAACCCAGG CATTCTTCTCGGGACTTATCCTGCAGACCATTGGACAGAAGAACCGGCAGGATTTTGAAA TGGAACTGCAGGCAATCGAAGAGAGAAAGAAAAGACTGGATAAAGAATAGAACTGTTAAA TTATGTACAAAAATGTGCACAAACTTCTAAAAAGTTGACAAATAAATGAGGACTGTGCCA TAATAAAACGATTTTTAAATCAGGAGGAGAATAAGATGAGAACTTATTTAGTAACTGGAG GAGCCGGATTTATTGGTTCAAACTACATTCACTACATGTTTCGTAAATACGACAATGAGA TTCGTATTATCAATGTAGACGCATTAACTTATGCAGGAAACTTGGAAAATTTAAAAGACA TCGAGAACAGAGACAACTATACATTTGTAAAAGCAGATATTACAGACAAAGAAGCAATCC GCAAAGTGTTTGCAGAAAATGACATTGACCGCGTGGTACACTTTGCTGCGGAAAGTCATG TTGACCGTAGTATCAAAAACCCTGAAGTATTCGTTCATACCAATGTAATGGGTACTGCAG TTATGTTAAACTGCGCAAAAGAAGCATGGGAACTTCCGGATGGAAGCTTCAAGGAAGGTA AGAAATTCCTTCACGTATCCACAGACGAAGTATATGGTTCCCTTCCAGATGATGGAAAGA GCTTCTTCTATGAGACAACACCATATCAGCCACACAGCCCATACTCTGCAAGTAAGGCAT CTTCTGATATGTTAGTAAAATCTTATATTGATACTTATCATTTCCCGGCAAATATTACCA ATACATCCAATAACTACGGACCTTACCAGTTCCCGGAGAAACTGATTCCGTTAATCATCA ACAATGCTTTACACGGAAAGAAACTTCCGGTATATGGTGATGGAATGAACATCCGTGACT GGTTATATGTAGATGATCATGCAAAGGGAATTGATATGGTTCAGGAGCAGGGACGTCTTG GACAGACTTATAACATCGGTGGACACAATGAGAAACGTAACATTGAAATCATCAATATCA TTATTGAAACCTTGCAGGAGATTCTTCCGGATGATGATCCAAGAAAAGCAAATGTAAGCA AAGACTTAATCACTTATGTAGAAGACCGTAAAGGACATGACAGACGTTATGCAATCGCTC CGGACAAAATCAAAGCTGAGATTGGCTGGGAGCCGGAGACCATGTTCAAAGATGGTATCA AGAAGACAATTGCATGGTATCTTGAGCATGAAGACTGGATGAACAATGTAACCAGTGGTG ACTACCAGAAATATTATGCAGATATGTATAAAGATAAATAAATAGAAGTATAGAAAGAGA AGCGGATAGGAAAATACAAGACCTGTCCGCTTTTTTTGTGCGTTTTCGCCAGTATTTCCA CGGGTACTACAGAAATTATTAAGGAAAATATAGATGAAAAATACGATGTAATATGTTATA ATTAAATGATTTATTGAGTGAAAGAATGCGTTGGAGAACGTAAACAATATGATTAAGGAG GAGATTATTCCATGAAAGGTATTATTTTAGCCGGAGGATCCGGAACAAGACTTTATCCAT TGACAAAGGCAGTATCGAAACAGATTATGCCGGTATATGACAAACCAATGATTTATTATC CATTATCTACACTGATGTTAGCAGGAATCCGTGAGGTGCTGGTTATCTCTACACCAAGAG ATCTTCCGGTATTTGAGGAGTTATTAGGAGATGGAAGCCAGCTGGGAATGTCTTTCTCTT ATGCAGTGCAGGAACAGCCAAGAGGACTTGCAGATGCATTTATCATCGGTGAGAAATTCA TTGGCAATGATGCAGTGGCATTGGTATTAGGCGATAATATTTTCTATGGACAGAGTTTCT CTAAAGTGCTTCGCAGTGCAGCAGAGCGTACAGAGAGCCAGCCGGGAGCAACCATTTTCG GATATTATGTAAAAGATCCAAGAGAATACGGTGTAGTAGAATTTGATGAGCACGGTAAAG CATTGTCAATCGAAGAAAAACCGGCTCAGCCAAAATCTAATTATGCAGTTCCGGGACTTT ACTTCTATGACAATGATGTAGTAGAGATTGCCAAGAATGTAAAACCATCTGCAAGAGGTG AAATTGAAATTACAAGTGTTAATAATGAATATCTGAACCGTGGAACCCTTCAGGTTGAGA CCTTAGGAAGAGGATTTGCATGGTTAGATACCGGAAACCATGACATGCTTCTTGATGCAG CAGATTTCGTAGCAGCATTCCAGAAACGTCAGGGATTATATATTTCCTGTATCGAAGAGA TTGCATACAAGAGAGGATTCATCGATAAAGCACAGTTAGAGAAGCTGGCGCAGCCATTAC TTAAGACTGCATATGGTCAGTATCTGATGGACGTTGCTAACGGATTATAAAATAGAGTTG GGTATTATTGTAGAAAAGCGAGGAAGAGAAAAATGGGAAAAATCAAAGTAACAAACGACT GTAATGGAATCAAAGGATTAAAAGTAATTGAACCTGCAGTATTCGGAGATGCAAGAGGAT ACTTCATGGAGACCTATAACTATAATGATTTCAAGGAAGCAGGAATTGACTGTGAATTCG TACAGGACAACCAGTCTGCATCCAAGAAGGGTGTACTTCGTGGACTTCATTTCCAGTTAA ACTATCCACAGGACAAGCTGGTGCGTGTAGTAAACGGTGAAGTATTTGACGTCGCAGTTG ACTTAAGAGAAGGTTCTGAAACCTTTGGAAAATGGTTTGGAGTTACTTTGTCTGCTGAGA ACAAGAAACAGTTCTTCATTCCAAAGGATTTTGCACACGGATTTATCGTATTAAGTGATT ATGCAGAATTCTGCTATAAAGTTACTGATTTCTATCATCCAAATGATGAGGGCGGACTTC TGTGGAATGACCCGGATATCGGTGTAGAATGGCCGATGCCGGAAGGAATGACAGAGGCAG ACTTGATTTTATCCGACAAAGATAAAGTATGGCATGGCATCAAGGCATATGCAGAGAATA AGAATAACTGCAAGAAAGATTGATAGGCAGTTGAAGTAACATAAGGAGTAAATGATATGT CTAAGAAGAGACTCGCAGCCAGCCTGCTGGTGGTACTGTTTGGTATATTGGCGAACATCC TGGTTTTCAGATATGAACCGGCTTTAAGTGAGAAGAAGGTTACGGTAAAGGTAACACTTA CATCCGATGAAGAAAATTATATGGAGATGTTCTATCTGACAGACGGACAGAAAATGCCGG ATGATTTCAAGGCAGAACAAAGCAGCGGAGTGAATTATAAAAAAGCTGGAACAGAGAAAA CGTTAGAATATACCGTGCCGGCAGATGCTTCATATCTTCGCTTTGATTTGGGAAGCGGAG CATCCGAGACAACTATTTCCGGCATAACCGTTGAAAGTAATGGAAAAACTGCGGTAATAG ATCAGAATGTTTTTTCAGAAACAGTGCGTCTGCAGGAAGTAAAACAGAATAATGTTTCGG ACGGTATTGCCCTGACAGCAGAAAAAGAGGATCCTTACCTGGTATGGAATACAGAGAACT GGGGAATTGCGAAGCTGGTAAAGGACAGCCTGTGGCTTCAGTATCTTCTGGTTAAAATCC TTGCGTGTGTTGTATTAGATATCATTCTTATTGTTGCATTAAAAGCAGGTAAAAAGCTGA TTGTTCTTCCGAAAGAAGTGTATCAGAACAGAAAGCTGCTCTGGAATTTGTCAAAGAATG ATTTTAAAACTAAATTTGCAGGTTCCTACCTTGGTATTATCTGGGCATTTATACAGCCGA TTGTAACGGTAGTGGTATACTGGTTCGTATTTGAAAAAGGATTAAAGGCTGGCGGAATCA ACACCAGAGCAGGAATTGATGTTCCGTTTGTACTCTGGCTGGTTGCAGGTCTGGTGCCTT GGTTCTTCTTCCAGGATGCATTAAATGGTGGAACCAATGCACTGATTGAATACAGCTATC TGGTTAAGAAGGTTGTATTTAAGATAAGTATTCTCCCAATTGTGAAAGTAGTATCTGCAC TGTTTGTACATGTATTCTTCGTAGTATTTACGCTGGTGCTGTATAGTGCATATCACTATT ATCCGGATTTATATACATTGCAGATTGTGTATTATACCTTTGCCATGTTTATTATGGTAT TGGGAATCGTGTATGCAACCTGTGCGATTGTAATCTTTTTCCGTGATTTAACACAGGTGA TTAACATTGTTCTGCAGGTTGGGATGTGGATGACACCGATTATGTGGAACATTGATACCA TGGAATTATCTCCAGTGCTGATTACCATATTCAAACTGAATCCGATGTACTATATTGTGG CAGGATACCGGGATGCGTTGATTAATAAGGCGTGGTTCTGGGAAAATGCACCACTGACTT TATACTTCTGGCTTCTGACAGCAGTATTATTCGGTATCGGAACCATGATATTTAAGCGGT TGAAGATTCATTTTGCAGATGTATTATAGGAAGGCATAGGATATGAGCGAAGTAGCAATT AGAGTAGATGATGTAAGTAAATTATATAAGCTTTACGATAAACCTTCAGACAGACTGAAG GAATCGTTAGGCTTGACACGAAAGAAATTATATAAGGAACATTATGCACTGCATAATGTT TCTTTTGATGTAAAAAGAGGAGAAACCGTTGGCATAATCGGAACCAACGGTTCCGGAAAA TCTACGATTCTTAAGATTATTACCGGAGTCTTGAATCCATCCGGTGGTCATGTAGAGATT GATGGAAGAATTTCTGCACTGTTGGAGCTGGGTGCAGGCTTCAATATGGAATATACCGGA ATTGAGAATATCTACCTTAATGGAACCATGATTGGTTTTTCTAGGGAAGAGATTGATGCA AAGATGCAGGATATTCTTGATTTTGCAGATATCGGTGACTTTGTGCATCAGCCGGTCAAG ACATATTCCAGTGGTATGTTTGTGCGGCTGGCATTTGCGGTAGCGATTAATATTGACCCG GAAATCCTGATTGTCGATGAGGCGTTGTCGGTAGGAGACGTATTCTTTCAGGCAAAATGC TACAAGAAATTTGAAGATTTTAAGAAAATGGGAAAAACCATCCTTTTTGTCAGCCATGAT CTAGGCAGTATCAGCAAATACTGTGACCGTGTTGTACTTTTAAACAGAGGAAAGAAGCTG GCAGAGGGTACACCAAAAGAAATGGTAAGCATGTATAAGCGAATCATGGTCAATCAGGAT AAGGCGGAGGAAATCGCAGCACACCAGATGGACATGAGCTCCTTGGAAGAAGATGATGAA AAGGAAATCAAAGAGGCTGCCTGCGAAGGACAGTGGAAGAATCATTACAATCTGAATCCG GATGTGGATGAATATGGCAATGGTGCCGCTGAAATTGAAGACTTTGCCATAATAGATGAG AATGGTAATTATACCAATGCAATTGTAAAAGGAACACGATTCCGGCTGAAATCCAAAGTA AAATTTAAACAGGATGTTCATGATCCGATATTTACCTATACCTTTAAAAATATACAGGGT GTGGCAATAACCGGAACCAATACCATGTATGAGAAGAAGGATGTTCCACTGGCAAAAGAA GGGGAGACTTATGTTGCAACCTTTGAGCAGGATATGTTCCTGCAGGGAGGGGAATACTTA TTGTCCATGAGCTGTACCGGATATCGTGACGGTGAGTTCCAAGTATACCACAGATTATAT GATGTATGCAATGTGACGGTGGTTTCAGATAAGAATACCGTAGGTTTTTATGATATGAAT TCTGTTACGACAGTGGAGAAGATAGAAGAGTAA
Region Details
| Region | 1 |
| Region Length | 9.9Kb |
| Completeness(score) | incomplete(10) |
| Specific Keyword | NA |
| Region Position | 162707-172699 |
| # tRNA | 0 |
| # Total Proteins | 10 |
| # Phage Hit Proteins | 8 |
| # Hypothetical Proteins | 0 |
| Phage + Hypothetical Protein % | 80% |
| # Bacterial Proteins | 2 |
| Attachment Site | no |
| # Phage Species | 6 |
| Most Common Phage Name(hit genes count) | PHAGE_Entero_phi92_NC_023693(4) PHAGE_Sphing_PAU_NC_019521(4) PHAGE_Escher_phAPEC8_NC_020079(4) PHAGE_Bacill_SP_15_NC_031245(2) PHAGE_Bacill_G_NC_023719(2) PHAGE_Prochl_P_SSM2_NC_006883(2) PHAGE_Plankt_PaV_LD_NC_016564(1) PHAGE_Staphy_phiN315_NC_004740(1) PHAGE_Oenoco_phiS13_NC_023560(1) PHAGE_Sulfol_STSV1_NC_006268(1) PHAGE_Synech_S_SM2_NC_015279(1) PHAGE_Oenoco_phi9805_NC_023559(1) PHAGE_Synech_ACG_2014f_NC_026927(1) PHAGE_Oenoco_phiS11_NC_023571(1) |
| First Most Common Phage # | 2 |
| First Most Common Phage % | 40% |
| GC % | 40.38% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Questionable (score 70-90)
Incomplete (score < 70)
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Score: | The score of the region based on the above criteria. |
| # Total Proteins: | The number of ORFs present in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi|00000000|ref|QTVJ01000003.1| Roseburia sp. AF34-16 AF34-16.Scaf3, whole genome shotgun 391661, gc%: 40.59%
Download details as .txt file: detail.txt file_download
Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File
Hits against Bacterial Database or GenBank File
Region 1, total 10 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | 162707..164056 | PHAGE_Bacill_SP_15_NC_031245: hypothetical protein; DWZ65_05470; phage(gi100155) | 1.59e-23 | Showinfo_outline |
| 2 | 164074..164337 | HPr family phosphocarrier protein; DWZ65_05475 | 0.0 | Showinfo_outline |
| 3 | 164341..165216 | PHAGE_Escher_phAPEC8_NC_020079: putative dTDP-4-dehydrorhamnose reductase; DWZ65_05480; phage(gi448260370) | 1.21e-39 | Showinfo_outline |
| 4 | 165228..166058 | PHAGE_Staphy_phiN315_NC_004740: probable ss-1,3-N-acetylglucosaminyltransferase; DWZ65_05485; phage(gi30043988) | 1.69e-06 | Showinfo_outline |
| 5 | 166075..167016 | PHAGE_Oenoco_phiS13_NC_023560: Bactoprenol glucosyl transferase; DWZ65_05490; phage(gi589286273) | 8.32e-06 | Showinfo_outline |
| 6 | 167122..168207 | PHAGE_Escher_phAPEC8_NC_020079: putative dTDP-glucose 4,6-dehydratase; DWZ65_05495; phage(gi448260373) | 6.78e-98 | Showinfo_outline |
| 7 | 168418..169296 | PHAGE_Entero_phi92_NC_023693: Phi92_gp066; DWZ65_05500; phage(gi726646999) | 6.43e-132 | Showinfo_outline |
| 8 | 169339..169929 | PHAGE_Entero_phi92_NC_023693: Phi92_gp065; DWZ65_05505; phage(gi726646998) | 1.81e-54 | Showinfo_outline |
| 9 | 170140..171375 | ABC transporter permease; DWZ65_05510 | 0.0 | Showinfo_outline |
| 10 | 171389..172699 | PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; DWZ65_05515; phage(gi371496158) | 2.19e-09 | Showinfo_outline |
Sequence
>162707..164056
RoseburiaspAF3416MSRMFGTDGVRGVAGAELTIELATKLGQAGAYVLTKEQEHQPTLIVGCDTRISGGMLANALMAGICSVGANAIYAGVMPTPAIAYLTRKHKVDAGVVISASHNPMEFNGIKFFNGDGYKLSDTLEDEIEELIRNNMKDVVLPIGSGVGRIDYRFDLRDEYVKFMKKCVPVDLTGMKIVIDCAEGASYYTSVKTLKDLGADLVAIHTKPDGTNINANCGSTHMEELQARVVYEKADVGLAFDGDADRMLAVDEKGNLVDGDQLMAICGCHMKKKGTLKKNTIVVTVMTNLGFSLMGEREGIHVEKTKVGDRYVLENMLENGYNIGGEQSGHIIFLDDNTTGDGLLSGLHLLQVMKETGRKLSELAEVMEVLPQALVNAKVPNHKKEKFMEYTEIAEAIKALEEKFNGEGRVLIRPSGTEPLVRVMIEGKNQSEIEEEAQKLAELITNTML
Sequence
>164074..164337
RoseburiaspAF3416MVSQKVKIKNPTGLHLRPAGILCKEAMQYKSLVTFHYRGNTANAKSVLSVLGACIKFGDEIEFVCEGDDEDEALKAMVEAVESGLGE
Sequence
>164341..165216
RoseburiaspAF3416MKKILVTGCNGQLGRAIRKEYAASDVEFINTDVVEGEGVVSLDITDVDAVLKLVRAEKPDVIINCAAHTNVDKCEEQWDLAYKINAIGPRNLSIAATEADAKMIHVSTDYVFEGNGTRPYTEFDAPNPVSAYGKTKLEGENFVKEFAKKHFILRTAWLYGDGKNFVKTMLALAENHDELNVVCDQVGTPTSAVELAKMIHYLEGTENYGTFHATCEGDTNWADFAEAIFKRAGKNVKVNHVTSKQYKEMNPASANRPAYSILEDYMIKLTSDFVMADWQDALDVYMKELLG
Sequence
>165228..166058
RoseburiaspAF3416MEPLVSVCIPAYNNAEYIKDTIDSILNQTYQNIELVIVDDNSKDNTYELIQEIGDERIKLYHNDKNLGMSGNWNRCLSLCTGKYAKLVCADDILSPDALKREVDALEANPTAVIAESDTKLIDLNGKGKGFYKRYKKSGLVDGKEISRKGFFSQDYFGAPQANTFRRDVAEKIGGFDTDYTYILDYDFFVSLACEGDVYIIHEPLNFFRVRKGSNTGEVMGGNKEKTKVYVEEHLHLLEKNKERLKLTPKDIRRSVMIRKFRCFAASVYLKLFVHK
Sequence
>166075..167016
RoseburiaspAF3416MDKIAVLIPCYNESKTIVKVVEDFKRVIPEAVIYVYDNNSNDGTDELARSAGAVVRYEYQQGKGNVIRRMFREIDAECYIMTDGDDTYPAESAPEMIKQVLEHGADMVVGDRLSSTYFQENTRPFHNFGNSLVRKSINLFFRTDIKDIMTGYRAFSYQFVKSFPVLSKGFEIETEMSIHAADKNMQVDNVIIEYRDRPEGSVSKLNTYSDGFKVLRTIARLYRTYKPMSFFGIIAFILAALGVGFLIPVLVVYAKTGMVPNFPTLFACCFTILAATQAFFSGLILQTIGQKNRQDFEMELQAIEERKKRLDKE
Sequence
>167122..168207
RoseburiaspAF3416MRTYLVTGGAGFIGSNYIHYMFRKYDNEIRIINVDALTYAGNLENLKDIENRDNYTFVKADITDKEAIRKVFAENDIDRVVHFAAESHVDRSIKNPEVFVHTNVMGTAVMLNCAKEAWELPDGSFKEGKKFLHVSTDEVYGSLPDDGKSFFYETTPYQPHSPYSASKASSDMLVKSYIDTYHFPANITNTSNNYGPYQFPEKLIPLIINNALHGKKLPVYGDGMNIRDWLYVDDHAKGIDMVQEQGRLGQTYNIGGHNEKRNIEIINIIIETLQEILPDDDPRKANVSKDLITYVEDRKGHDRRYAIAPDKIKAEIGWEPETMFKDGIKKTIAWYLEHEDWMNNVTSGDYQKYYADMYKDK
Sequence
>168418..169296
RoseburiaspAF3416MKGIILAGGSGTRLYPLTKAVSKQIMPVYDKPMIYYPLSTLMLAGIREVLVISTPRDLPVFEELLGDGSQLGMSFSYAVQEQPRGLADAFIIGEKFIGNDAVALVLGDNIFYGQSFSKVLRSAAERTESQPGATIFGYYVKDPREYGVVEFDEHGKALSIEEKPAQPKSNYAVPGLYFYDNDVVEIAKNVKPSARGEIEITSVNNEYLNRGTLQVETLGRGFAWLDTGNHDMLLDAADFVAAFQKRQGLYISCIEEIAYKRGFIDKAQLEKLAQPLLKTAYGQYLMDVANGL
Sequence
>169339..169929
RoseburiaspAF3416MGKIKVTNDCNGIKGLKVIEPAVFGDARGYFMETYNYNDFKEAGIDCEFVQDNQSASKKGVLRGLHFQLNYPQDKLVRVVNGEVFDVAVDLREGSETFGKWFGVTLSAENKKQFFIPKDFAHGFIVLSDYAEFCYKVTDFYHPNDEGGLLWNDPDIGVEWPMPEGMTEADLILSDKDKVWHGIKAYAENKNNCKKD
Sequence
>170140..171375
RoseburiaspAF3416MPDDFKAEQSSGVNYKKAGTEKTLEYTVPADASYLRFDLGSGASETTISGITVESNGKTAVIDQNVFSETVRLQEVKQNNVSDGIALTAEKEDPYLVWNTENWGIAKLVKDSLWLQYLLVKILACVVLDIILIVALKAGKKLIVLPKEVYQNRKLLWNLSKNDFKTKFAGSYLGIIWAFIQPIVTVVVYWFVFEKGLKAGGINTRAGIDVPFVLWLVAGLVPWFFFQDALNGGTNALIEYSYLVKKVVFKISILPIVKVVSALFVHVFFVVFTLVLYSAYHYYPDLYTLQIVYYTFAMFIMVLGIVYATCAIVIFFRDLTQVINIVLQVGMWMTPIMWNIDTMELSPVLITIFKLNPMYYIVAGYRDALINKAWFWENAPLTLYFWLLTAVLFGIGTMIFKRLKIHFADVL
Sequence
>171389..172699
RoseburiaspAF3416MSEVAIRVDDVSKLYKLYDKPSDRLKESLGLTRKKLYKEHYALHNVSFDVKRGETVGIIGTNGSGKSTILKIITGVLNPSGGHVEIDGRISALLELGAGFNMEYTGIENIYLNGTMIGFSREEIDAKMQDILDFADIGDFVHQPVKTYSSGMFVRLAFAVAINIDPEILIVDEALSVGDVFFQAKCYKKFEDFKKMGKTILFVSHDLGSISKYCDRVVLLNRGKKLAEGTPKEMVSMYKRIMVNQDKAEEIAAHQMDMSSLEEDDEKEIKEAACEGQWKNHYNLNPDVDEYGNGAAEIEDFAIIDENGNYTNAIVKGTRFRLKSKVKFKQDVHDPIFTYTFKNIQGVAITGTNTMYEKKDVPLAKEGETYVATFEQDMFLQGGEYLLSMSCTGYRDGEFQVYHRLYDVCNVTVVSDKNTVGFYDMNSVTTVEKIEE
Roseburia sp. AF34-16 AF34-16
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Length: 391661 bps
Phages: 1
arrow_upwardarrow_upwardarrow_upward
Click on a region in the genome above to show details here.
Click on a region in the genome above to show details here.
Viewer Options
Click on a sequence to see details.
Locus 1: DWZ65_05470 (Region 1)
Locus: DWZ65_05470ORF Start: 162707
ORF Stop: 164056
Strand: Forward
Protein Sequence: MSRMFGTDGVRGVAGAELTIELATKLGQAGAYVLTKEQEHQPTLIVGCDTRISGGMLANALMAGICSVGANAIYAGVMPTPAIAYLTRKHKVDAGVVISASHNPMEFNGIKFFNGDGYKLSDTLEDEIEELIRNNMKDVVLPIGSGVGRIDYRFDLRDEYVKFMKKCVPVDLTGMKIVIDCAEGASYYTSVKTLKDLGADLVAIHTKPDGTNINANCGSTHMEELQARVVYEKADVGLAFDGDADRMLAVDEKGNLVDGDQLMAICGCHMKKKGTLKKNTIVVTVMTNLGFSLMGEREGIHVEKTKVGDRYVLENMLENGYNIGGEQSGHIIFLDDNTTGDGLLSGLHLLQVMKETGRKLSELAEVMEVLPQALVNAKVPNHKKEKFMEYTEIAEAIKALEEKFNGEGRVLIRPSGTEPLVRVMIEGKNQSEIEEEAQKLAELITNTML
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: DWZ65_05470, hypothetical protein, phage(gi100155), PHAGE_Bacill_SP_15_NC_031245
Homolog/Ortholog E-Value: 1.59e-23
Locus 2: DWZ65_05475 (Region 1)
Locus: DWZ65_05475ORF Start: 164074
ORF Stop: 164337
Strand: Forward
Protein Sequence: MVSQKVKIKNPTGLHLRPAGILCKEAMQYKSLVTFHYRGNTANAKSVLSVLGACIKFGDEIEFVCEGDDEDEALKAMVEAVESGLGE
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: DWZ65_05475, HPr family phosphocarrier protein
Homolog/Ortholog E-Value: N/A
Locus 3: DWZ65_05480 (Region 1)
Locus: DWZ65_05480ORF Start: 164341
ORF Stop: 165216
Strand: Forward
Protein Sequence: MKKILVTGCNGQLGRAIRKEYAASDVEFINTDVVEGEGVVSLDITDVDAVLKLVRAEKPDVIINCAAHTNVDKCEEQWDLAYKINAIGPRNLSIAATEADAKMIHVSTDYVFEGNGTRPYTEFDAPNPVSAYGKTKLEGENFVKEFAKKHFILRTAWLYGDGKNFVKTMLALAENHDELNVVCDQVGTPTSAVELAKMIHYLEGTENYGTFHATCEGDTNWADFAEAIFKRAGKNVKVNHVTSKQYKEMNPASANRPAYSILEDYMIKLTSDFVMADWQDALDVYMKELLG
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: DWZ65_05480, putative dTDP-4-dehydrorhamnose reductase, phage(gi448260370), PHAGE_Escher_phAPEC8_NC_020079
Homolog/Ortholog E-Value: 1.21e-39
Locus 4: DWZ65_05485 (Region 1)
Locus: DWZ65_05485ORF Start: 165228
ORF Stop: 166058
Strand: Forward
Protein Sequence: MEPLVSVCIPAYNNAEYIKDTIDSILNQTYQNIELVIVDDNSKDNTYELIQEIGDERIKLYHNDKNLGMSGNWNRCLSLCTGKYAKLVCADDILSPDALKREVDALEANPTAVIAESDTKLIDLNGKGKGFYKRYKKSGLVDGKEISRKGFFSQDYFGAPQANTFRRDVAEKIGGFDTDYTYILDYDFFVSLACEGDVYIIHEPLNFFRVRKGSNTGEVMGGNKEKTKVYVEEHLHLLEKNKERLKLTPKDIRRSVMIRKFRCFAASVYLKLFVHK
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: DWZ65_05485, probable ss-1,3-N-acetylglucosaminyltransferase, phage(gi30043988), PHAGE_Staphy_phiN315_NC_004740
Homolog/Ortholog E-Value: 1.69e-06
Locus 5: DWZ65_05490 (Region 1)
Locus: DWZ65_05490ORF Start: 166075
ORF Stop: 167016
Strand: Forward
Protein Sequence: MDKIAVLIPCYNESKTIVKVVEDFKRVIPEAVIYVYDNNSNDGTDELARSAGAVVRYEYQQGKGNVIRRMFREIDAECYIMTDGDDTYPAESAPEMIKQVLEHGADMVVGDRLSSTYFQENTRPFHNFGNSLVRKSINLFFRTDIKDIMTGYRAFSYQFVKSFPVLSKGFEIETEMSIHAADKNMQVDNVIIEYRDRPEGSVSKLNTYSDGFKVLRTIARLYRTYKPMSFFGIIAFILAALGVGFLIPVLVVYAKTGMVPNFPTLFACCFTILAATQAFFSGLILQTIGQKNRQDFEMELQAIEERKKRLDKE
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: DWZ65_05490, Bactoprenol glucosyl transferase, phage(gi589286273), PHAGE_Oenoco_phiS13_NC_023560
Homolog/Ortholog E-Value: 8.32e-06
Locus 6: DWZ65_05495 (Region 1)
Locus: DWZ65_05495ORF Start: 167122
ORF Stop: 168207
Strand: Forward
Protein Sequence: MRTYLVTGGAGFIGSNYIHYMFRKYDNEIRIINVDALTYAGNLENLKDIENRDNYTFVKADITDKEAIRKVFAENDIDRVVHFAAESHVDRSIKNPEVFVHTNVMGTAVMLNCAKEAWELPDGSFKEGKKFLHVSTDEVYGSLPDDGKSFFYETTPYQPHSPYSASKASSDMLVKSYIDTYHFPANITNTSNNYGPYQFPEKLIPLIINNALHGKKLPVYGDGMNIRDWLYVDDHAKGIDMVQEQGRLGQTYNIGGHNEKRNIEIINIIIETLQEILPDDDPRKANVSKDLITYVEDRKGHDRRYAIAPDKIKAEIGWEPETMFKDGIKKTIAWYLEHEDWMNNVTSGDYQKYYADMYKDK
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: DWZ65_05495, putative dTDP-glucose 4,6-dehydratase, phage(gi448260373), PHAGE_Escher_phAPEC8_NC_020079
Homolog/Ortholog E-Value: 6.78e-98
Locus 7: DWZ65_05500 (Region 1)
Locus: DWZ65_05500ORF Start: 168418
ORF Stop: 169296
Strand: Forward
Protein Sequence: MKGIILAGGSGTRLYPLTKAVSKQIMPVYDKPMIYYPLSTLMLAGIREVLVISTPRDLPVFEELLGDGSQLGMSFSYAVQEQPRGLADAFIIGEKFIGNDAVALVLGDNIFYGQSFSKVLRSAAERTESQPGATIFGYYVKDPREYGVVEFDEHGKALSIEEKPAQPKSNYAVPGLYFYDNDVVEIAKNVKPSARGEIEITSVNNEYLNRGTLQVETLGRGFAWLDTGNHDMLLDAADFVAAFQKRQGLYISCIEEIAYKRGFIDKAQLEKLAQPLLKTAYGQYLMDVANGL
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: DWZ65_05500, Phi92_gp066, phage(gi726646999), PHAGE_Entero_phi92_NC_023693
Homolog/Ortholog E-Value: 6.43e-132
Locus 8: DWZ65_05505 (Region 1)
Locus: DWZ65_05505ORF Start: 169339
ORF Stop: 169929
Strand: Forward
Protein Sequence: MGKIKVTNDCNGIKGLKVIEPAVFGDARGYFMETYNYNDFKEAGIDCEFVQDNQSASKKGVLRGLHFQLNYPQDKLVRVVNGEVFDVAVDLREGSETFGKWFGVTLSAENKKQFFIPKDFAHGFIVLSDYAEFCYKVTDFYHPNDEGGLLWNDPDIGVEWPMPEGMTEADLILSDKDKVWHGIKAYAENKNNCKKD
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: DWZ65_05505, Phi92_gp065, phage(gi726646998), PHAGE_Entero_phi92_NC_023693
Homolog/Ortholog E-Value: 1.81e-54
Locus 9: DWZ65_05510 (Region 1)
Locus: DWZ65_05510ORF Start: 170140
ORF Stop: 171375
Strand: Forward
Protein Sequence: MPDDFKAEQSSGVNYKKAGTEKTLEYTVPADASYLRFDLGSGASETTISGITVESNGKTAVIDQNVFSETVRLQEVKQNNVSDGIALTAEKEDPYLVWNTENWGIAKLVKDSLWLQYLLVKILACVVLDIILIVALKAGKKLIVLPKEVYQNRKLLWNLSKNDFKTKFAGSYLGIIWAFIQPIVTVVVYWFVFEKGLKAGGINTRAGIDVPFVLWLVAGLVPWFFFQDALNGGTNALIEYSYLVKKVVFKISILPIVKVVSALFVHVFFVVFTLVLYSAYHYYPDLYTLQIVYYTFAMFIMVLGIVYATCAIVIFFRDLTQVINIVLQVGMWMTPIMWNIDTMELSPVLITIFKLNPMYYIVAGYRDALINKAWFWENAPLTLYFWLLTAVLFGIGTMIFKRLKIHFADVL
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: DWZ65_05510, ABC transporter permease
Homolog/Ortholog E-Value: N/A
Locus 10: DWZ65_05515 (Region 1)
Locus: DWZ65_05515ORF Start: 171389
ORF Stop: 172699
Strand: Forward
Protein Sequence: MSEVAIRVDDVSKLYKLYDKPSDRLKESLGLTRKKLYKEHYALHNVSFDVKRGETVGIIGTNGSGKSTILKIITGVLNPSGGHVEIDGRISALLELGAGFNMEYTGIENIYLNGTMIGFSREEIDAKMQDILDFADIGDFVHQPVKTYSSGMFVRLAFAVAINIDPEILIVDEALSVGDVFFQAKCYKKFEDFKKMGKTILFVSHDLGSISKYCDRVVLLNRGKKLAEGTPKEMVSMYKRIMVNQDKAEEIAAHQMDMSSLEEDDEKEIKEAACEGQWKNHYNLNPDVDEYGNGAAEIEDFAIIDENGNYTNAIVKGTRFRLKSKVKFKQDVHDPIFTYTFKNIQGVAITGTNTMYEKKDVPLAKEGETYVATFEQDMFLQGGEYLLSMSCTGYRDGEFQVYHRLYDVCNVTVVSDKNTVGFYDMNSVTTVEKIEE
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: DWZ65_05515, ABC transporter, phage(gi371496158), PHAGE_Plankt_PaV_LD_NC_016564
Homolog/Ortholog E-Value: 2.19e-09
Lysis
Terminase
Portal Protein
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Other
Transposase
Fiber Protein
Plate Protein
tRNA
Plate Protein
tRNA
Download data as .txt file: png_input file_download