Submission Results
Sequence Name: Not Available
GenBank Accession Number: QUQX01000028.1 open_in_new
GenInfo (GI) Number: 0000000000 open_in_new
Download Results: QUQX01000028.1.PHASTER.zip
gi|00000000|ref|QUQX01000028.1| Brevibacillus sp. VP NODE_30_length_19956_cov_149.491301, whole 19956, gc%: 37.51%
Download summary as .txt file: summary.txt file_download
Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.
| Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
|---|---|---|---|---|---|---|---|---|
| 1 | 10.3Kb | incomplete | 10 | 15 | 299-10656 info_outline | PHAGE_Paenib_Harrison_NC_028746(4) | 35.41% | Show info_outline |
Region DNA
>1 299-10656 ATGTATTCTTTACCGCAATTACAAGCGTTAGATTATTTGCTTAAAAACATCACAAGCAAC GATTTGTATCCTCTATACCAAAAAAATTTAAAATTTGTTGTTAATATCAACAATTCCCTT TGGTGCGGTGATTTCGTTGAAACAAAAGGCAATTACGTTAGTCAAAAATTCATAGATGAA TCTGGAGATGTTGAAACTGTCAGATTTACACCTTTTGGAAGTAACGCCACTACATTTTTA AAGCTAATTCAGGATTCATATGTGGATGATTGTAGAGATCAGCCACAGTATTTTAGGAGT GATCCCTTTAAAAGGATAAATAGTCTGCCTTTGCTGTTTGATTCACTAATTAAAATACTT TATAAAGCTAATATTTCTGAAGAAACAAGCCCGCTATTCCCTTATTTACTTAATGCCCAA TCTTTGGACAATAAGCTCAGTTTGCCTTTTATCAATTTAGAAGGAGAAAAAATTAAACTA GTATCCATCATCGAAATTAAAAATTAAAATCCTCCCTAAATTTTTCGATCGCTTTCAAAA TTTTCTTCTCCTTCTCAGCTTCTGACAGATTGCCATCATTGAGTAATTGAGAAATCCTCT TTTTGAAAAAGTAAAGAGGGTTTCTCTCGACCACTCTATGTGGTAACTCAATGCTTGCTT TTTCGATCCAATCCCCAAAATCTTCAATAGACATTTCTTCAATTTCTTGTGAAGTAGGTA AAAAAACCGCAATTTCTCTTTCCGGAAGAAGTTCTAATTCTTCACGTGCCTGATTTGGTG TTATCTTCCCTTCGCGCACATATCTTCTTAACTCTTCTTCTCGATTCTTTATTGAATTTT GTTCACTCAACCTATCTCACTCCTTTCTATTAGGCATATCGTCTGCCCATGCGACTTACA ACTCATTGCAAGCCCCATGCGGAGACGATCTCCGCAAAATATTGATTTATGCTTGTCCAA CATTTATGTCTGTGTTATCTTATAGGTACCATGTTTAATCCTTAAACAGTCTGTTCCCGC AGGCTGTTTTTTTGTGTAGCCAGCTCCAAAACTTCCTCGATTGTTACCACTGATCTCCCT TTTGATTGGTCAGCATCGCAAATCATTTCAATAACCTCTAAAGCAAATTCAGGCGAAATT CTATTGACCAACATTACTCACACAACCTTCCACTTTGAATTCTTTTAAACGTTCCAAATA CTCATCGCTGTAAAGATTTGTCCCAGTCAAAAGAGTCATTAAATTAGCGTCATAAGGATA CGTCCGTTCTAAAACATCCAATAGCCTGTTATTCCACTCGTAATTCATTCCAATCACCCT TTCACGATTTTTAGAAAACCACGGGCAACTAGCTTAGTTGTATGCTTCGTCCATTGTCCG ATCCATGATATCTTTGTTTCTTTGCAAATGATGGCTGTCATGTTAGTGCATGAGGTGTTC ACATCGAGCGTTTCCTGTAGCATTGCTTCGATCTGCATACGTTCTTCTACTGTGTACTGG TTAGGTGGTTTAATTAGAATGGGCTTAACGGCTTTAATTGCTACCAAGAGTTCCTCTAGC TCCTCAACCGTTTTTATCAAGCAAGTGTGTCGATTCATTTCAACGTTGTTTCCGTTTAAG ATAGGTGCGCTTGTCCCACCACTACTTTCATGTGCGGCGGCAATCGCTAGAAAAGGGTTG TCCGTTATATGTACAGATTTAGCTTTGATGTCAGATGGAGCATTGGCCCTTTCGTTTTTA TAAGCAGATACCGTTTCTCTGCTCACGTTTGCTTCTTCTGCAAATTTTTGTTGTGTCATA TCTAGTTCCATCAACGAATTGCCAAGCTGAAAACCATAGCTATTAATGTCACGTTCCATT ATTCATTGTTCCTCCTGTTTAGTTTTGCTACTTTAACGCTCATTTGTTCGCCTTCCTTTT ACCATCACAATTTTGATTTTTGTGTACAATTAAAGTGTGCTCGCTATTCCTTGCAATCCC TTGGGCTGCTCACCTGGGGGATTTTGATTATGTAATCGAAAGTATTCACGTAATCACCCT AGCTTGTCCGCCATAGAAACCCCGCTACTGTGCGGGAATAATTAACTGATCGTCAATATT TTCTTGCTGTTCTTCTTGTTTCAATTTCATCAGCTTTTCTTTTTTAATCAGTTCAATTAC TTCCGGCATGATTGCATCGAAAAAGCGTTTCGTTTGTTCGTGATTCAGCATGATCTTCAT ATACAACAACACCTCTTTTGTTTGTTTTTAGATGTATATGAGTGAGGAAGTTTGTCCTAT CCGCTTCTTATTTCGGATTGGGAGAATAATACACCCACTATCTGTGGGTATAATTACCGC ATAAATAATCCACAGTTGTTTCAAAGAAAGTAGCGATAGCATTCAATGTTTCATAACTAC CAAAACGTTCGCCGTTTTCAATCTTCGAAAACATACTAAATGAAATCCCTATTTTTTGTG CAGCTTCCTTTTGGGTAAGCTTCTTCTCCTTTCTCAATTGCTGCAAGATCGTCTTTCTAT GATGCTTCATTTTCATTTCACCTCTCAACATTTGTGATCTTTAATTAGACTATAACCCAC TATCTGTGGGTATGTCAACGTTTTTTCCCACTTTTAGTGATCTAATATAGTTAAACCCAC ATTTCGTGGTAAAATCAAGCTAGGTGGTGGTAAGTTTGTCTATTGTATTCGGAAAGAGAA TAGCTGAATTAAGAAAAAAAAGAGGATATTCTCAAGTGAACTTCGCAACCAAAATCAGCG TTAGTAAAAGTACCGTTGGTATGTGGGAAACCGGAGATAGAGAACCTGACAGTGATACTT TAGGAAAACTTGCTAATTTTTTTGATGTTTCTATCGACTATCTTCTAGGTAGAACTGATA ATCCTAAAAGCACTCTCACTGATAATGTCCGTTTATTTGTTGATAGCTTGGAGTTAACAG ATGAACAAATTTTAGACAAAATAAGTCTGTTGAATGTAGATGGTAATCCTCTGACTAAAG AGGAAGCTTTAGAGTTCATTGCTTTCGTTCGAGCAAAAAGGTCAATTAATAATAAAGAGT AGCCCCTCCTCATTTAGATAATGTGGAGGGTTTTTTTGTATCTAAAAAAATCTGCTCTAA TATTTCATTTATTGTAACTTCAACCTTTGTGTCAGTTGCTTTCCCTTGACTTCTCTCCAC CACATTAACTCCTCCTTCAAGACTTGTCATCATCTCTTGTTTTAGTCATATTACATACTC CCAGCAAAATATTAAACGGGACTATCTTTCATTAAATTCGACACTAATTTAAACAATTTC ATATATTACCTTTTAGGAAAATGAGTTATATAATTTAATCTTAGTAAAATTTTAACATGT AAAATGTAGTAAATTTACTTATTTTCATACGTACGAAAAATTGTTGACAAATCAAAAAAA TCATTTTTTTATAACAAAAAAAGAGCCATACGGCTCTCTTGATCTTTATTTTTTATTCCT AAGAATTTCTGTTACTTTATTAATATAAGTCCGTGAGACAGTTGAATACACTTGATTCTC TTTAATGTTGTATGGGGGATTAAAAAATACATATTGATTTTTTTGGGATTCAATTTTATT CATATTTACAATATTCCCTCTGTCTATCCATTCAAATCCCTCAGGCTTTAAAAATAAGCT CCAATCATCTAATACGTGGAATTCACGATACTGATTGTTTCCTTCTGCAAATATAATATT TCCGTCTCTAGCAAACTTCACAAGTAAAACATCATTTGTATCTAAATAAACGATACAATT ATTCTTTCTGTCAACAACAGGGAAACTAGGCATTAGTTTCAACCTTTATTTTTAAGTAAT TCTTTGGGAGGTTTTGGTTGATGTACCATAAAAGCCGATGCAGTACTAACGAAAAAGTTT GCCATCGAAGTCAGTATTACAGAAACAGAACGAGCTAGTCTTATTCTCATGTCATTTACC TTCCTCTGTTAATCAATGTAATGGATTGTATAAAAAACGCTTTTGATAAAATGGGAGAAA GAAATATAAAGTTACTTAATATAATAATAACAGATAAAATTTTTAACTGTGAATATTTTT CCTTCGGTATTCTTGAGTGCCCCTCTATGTTGCTAGGAGCATACAATACAATTAATAAGA GACTTAAAACTAATAAAATATAATTCATTCCTGGGGCGATTGGTATATGAGGCAAAATAA CAGCGAATAAAGTTGAAGTAACTATGCATAGTTTTGCTGATTTAAAATGGAATCCCCCAG ATACAATCCTTAAAAGTGAAAACGATAATATAGTTAACCCTGTTTCTACAATCTTTCCTG TTAATTGTCCAATTAGTAAAGAAATAAAAATAACAATAGAAGTATTTAGTATAATGATTA ATGCAAATTTCATCACTTCCTCACTTACTTTATCATCTTTACTCGCAATTTTTATATTTT TAGCTAGTTTCTCTGCTAAAGAATCAATCATTTTTGATATCCCTTTCTTTTGATAAATAA AGTAATACTCCTAATATACCTAAAAAGATTAGTGATATAAGTGCGAATTTCCCTCTAGCA AATATCCAATAATTAAAAAAGCCAAATAGTACAACACTAATGCAGACAGTTATTAGTAGC GCCAAATTATATCCTCGAAATTTAATTCGTACAAACCCAGTCGGTATAAAACCAAACCCC AAATTCATTCTCCGTAATCCAAAGCTAACTAATAAGGTTGGAATGATAGTTGTTATCTGT AGCAGATAACCAGCTTCAGAATTTAATCTAATCTCTTCTAAAGATAGTACAATAAATGTG CTCAGTATCATAAATGTTATATACTGAAACACCCCATACATCAGATAGGATGTTACAACC ATTACAGAAGCATAGAAAATAGGTATTCGACCTATTACCCAAAATAAAACAACTAACACT AACAAAAGAACAATTGGAGCAAAATCATTTATTTGTAAAAATGCCCTCAGATAATGCGAA AAGAACGTCATAATAAAACTTAGTACTACCATTTCAGTTAGATATTCTTTCAATTCAAAT CTGAATAAAGCAAACATCAAAGTAAATATCGCCAGATACTCAAATAAAGAAAATAAATAA AAAAGAACTATGTCAATCATATTTCCCTCTACGCACCCTTCTGATATTTAGTGCAAAACT ACTATGATTGTAACAGTCCTCAGCGTTCAATATCATCTATTTTCTTCTTGTTTTTTACAG TCAGATATGAAAGTAGCCAAATTTTCGCCTTAGAAGGTAATATTATTTTAATCAAAGATA TTTATAAACACCTATAATATGGTATTATAAGAGTATAAGTGTGCATATAATAAAAAGACC GCAGGTGTTGGTAGCACCTACGGTCATACAATAGACCTATCCCTTCAAAGGGGTGGCTCA TTTACAGAATGAAGTAGATCATTGAGTTGTCTGGCTCAAGGGTGATCTACTTCTTTTTAT GGAAGGACAGTAGAGCAACAATTAATAACCCAAATGTGAGCATTAAAGAAATTGCTTCAA ATACCATCATAGCTTCACCCCCTTCCATCCTGGAATAGGAGTGAGCCGACCGCCAACGAG GAGCACCGATCTATTGTAATCCCATTAGTTTACTATGAGTTTCCAACATAATCCATAGTC TTATTTAGGTACCTATCTATTAACGTTAGGAGAAAGCCGTTTCTATTGTCTAACAGGAAA AATTAGTTCGTGGTATAATAAAAAAGACCGTAAGTGCTACCAACACCTACGGTCAACGTT TCAAAATGGGTCAAATTTACTTGAAGATGATCTCCTAGCTCGTTAGCTAAAGGAGATCAT TTTCTTTTTTTAGAGAAAATCATTGTTAATCCAGCCCTTTTACATTTAATTATCTAAAAT AACTTGAGTATGACGGAACTCAGTTGGAACTGTGATTCTACCAATATGTCTGTCACGCAC AGTAGTTTTATTATTAGGATATTTAACTGCCTTCCAATCAGCAGTAATATCGTATACTTT TCCTACTGCATATATATTTACAACATATTCTCCTGGTTCATCAAACTCGGCATTCAGTTT TTGCCCTTTTTCAATTACATGAGTTACTTTCGAGACATACTCGTATCCTAAATCCGCTTT TACTACTTTGATTGGAAATTCTACACCACCTTTAAAATTATGTTCACTTTCAACAACTTC TTTAACATTCGAAGTATATTCATGCTTAATTTTAACCCCTCTAACAAAGCTTACATATTC TTTGTGAATCAATTCAAATTTTTTATCATCTTTATAATATTTTGCTTTAGCTGTACCCTT AACATACCCGTCCGCATAATATGTAATACCAGTATCTCTCTTAACTCTAGTAGACTCTGG CTCACTGTAAGAGCCCACCTCACGATATTTATCTGGATGATTACTATCTTTTTCATAGGT AGTAATGTCTTCTGCAAATACAGTAGAGGCTACATTAGTTGATAATAAAGCCGCCCCTAA AGCCAATAATGGTAATACCTTACTCTTCTTCATAAAAATAATCCTCCTAAAAATGAATTA TATATTTCATAGCAAATTTGCTATAAAACCATAGTTAAGGTTGTTTGCTTAAAAACTCCA TAAAAGAATTGAGGAAATCACCAGAAAGGTCAATTCCATTTGGTACTTTTATTTTGTCTG AAATAGAAACTATGCTTAAATTCAGCCCTTTTCCCGTGAAAATATAAGTATTAACCTCGG TATTGGGATACACATCACTATAATGATCTGAGATCCCATAATCTTTTTTTTGAGAGTTAT AAAAATTCGGTGCATATCTAATTGCGTTTTTCCACTCAAAAGCTTCGGTGTTACTAGGCG TTAAACCCATTTGAACAATAATTCCTTCTTTTTCGTTTTTATATACTAAAGTTTTATTAT TTTCTTGAAATACATCATGCTGCTTTTCAGATTCTCCCACTAGTGTTGGAACCATAGTTG AAATTTTCCAATCACCAGTAATTTCAACATACCCTTCTGGTTTAAAATTATTTTTAATAT TCTCATACATGTTGTTAAATTTATTGCTATCAAGAACTACCGAATTTTTTTTATCGTCAC ATGAGATTAATATCAGTGAAAATGCAAGTATATAACAAGCTAAAAAAAAGTAATGTATCC CTTTTTTTGCAAACATCATATCACCTTCTAATATTTGTAATTTTTATCCCCACTAGATAT TACCATAATGTAAAATAAAGTCAAATTTTTTAAACATTTCTTAATAATAGAATTTATATT GTTGGAATGCTTTTTATAAAGACCTAGAATATGGTATTATAAGTGTACAAGTACGCATAT AATAAAAAAGACCGCAGGTGCTCCAACACCTACGGTCATACAATAGACTATCCCTTCAAA GGGGTGGCTCATTTACAGAATGAAGTAGATCATTGAGCTGGGAAACTCAAGGGTGATCTA CTTCTTTTTATGGAAGGACAGTATTAACACGACCAGAGTTGCAAAAGAAATCATCAGTGT CAATGCATGAAATACCGTCATAGCTTCACCCCCTTCCACCTGGAATAGGAGTGAGCCGAC CACCCTTGAGAGAGCCGATTCTATTGTACCTAGACATTATAGCATGAAAATTTTTCCTAT TCCCTAATTATTTCTACTGTTTATCGGTTCCCTTAATGTGGTATTATAAGGATACAAACA CATATAATAAAAAGACCGCAGGTGCTGGTAACACCTACGGTTTGTTCAATAGACCATCCC CTCTAAGGGATTGGCTCAAGTGTTAGAAGTGAGAATGATCTCCCAGCCTTCCAAGCTCAA GGGAGGTCATTTCTTTTTTAAGTAGGTTAACAAAGCAAGGATGAACATGCCAAACATGAA CATCAGTGATAACGCTTGATATACCTCCATATTCTCACCCCCTTCCCTGTTAGGGTAAAA GAGAGTGAGCCAACCGCCCTTGAGGAGCCGATTCTATTGTACCTAGTCATTATATCATGG AAAATTTTCCTATTGTCTAATTATTCTACTGTTTATCTCTTCTCTTAATGTGGTATTATA AGGATACAAACACATATAATAAAAAAGACCGCAGGTGTTGGTAGCACCTACGGTTTGTAC AATAAGCTGTCTCCCAATGGGGCTGGCTCAGGTCACAAAGTAAGATCGTCAAGCTTTTGC GGGCTCAATGGCGATCTTACTTTTTTGTCATTTTGACAAATAGCCCAATTAAAGCAATGA TAAATGTTCCAAATGCAAACATTACCATAAGTGCTTCGTATACGGACATGAGCATCACCC CCTTGCTACTGTGACATGGGGATGAGCCAAGATCGCCATTGAGAGAGCCGATTCTATTGT ACCTAGCCATTATATCATGAAAATTTTTCCTTTCACTGATAAATTTGCATTTTTTACTAT TAGTCATAAACTGATAATATAAATTTGAATAGCAAATCGAAAGGAGATAGTCATTTGAGG GTTGGCACATATCGTCGAGTTTCTACAGAAATGCAACGCGAAGACGGAGTATCGCTCCAA ACGCAGGATGAACGACTTAAAGCGTTCATACAAAGCCAAGGCTGGTCACTAGTGGAAGAT TATGCGGATGAGGGATACTCTGCTAAGAACATGGATCGGCCAGCTCTAAAACGGCTTATA GAAGATATTAAACGTCAAAAGATAGATGTTGTCCTGGTTTATAGATTGGATCGTTTTGTT CGGTCGGTATCCGACTTGCATCATCTATTACAAGTTATGGACAAGCATGACGTTAAGTTT AAAAGTTGTACAGAAGTATTTGATACTACAAGCGCTACCGGAAGAATGTTTATTACCATA ATCGCAACTCTAGCGCAGTGGGAAAGAGAAACAATTGCAGAACGTGTATTTGATAATATG TTACATCGGAGCGAACAAGGAAAAAGAAATGGTGCCCCTGCTCCCTATGGATATACTCTT GAAGATGGCATTTTAACACCAGATGAAAATGAGGCGACATGGGTACGATATATTTTTCAA AAATATAAAACTAATGGTTCACAAAATATTGCAAAATACCTTAATGTACGAGGAATTCGT ACGAAAAAAGGTGAGGTTTGGAGCGATTATTCAGTCCGCTATATTTTAAAAAATCCAATA TATGCAGGTTATGTGCGTTGGAATCTCAGAAGTGCAGCGAAAGGGAAAAATACTGAGACA GTAATTGCAAAGTACGAACAAGAAAACTTTGAACCTTTAATTTCAAAAAGTGATTGGGAT GATATACAAGGGCTAATGAAGGAACGTAGTTTTATGGCGTTTAGGTCTGATAACCACTAT CCCTTTTCCAGCATAGCTAAGTGTGAAGAGTGTGGACATTCTTTTACTGGAGCATTTAAA AAACGTAAAAGTGGTGGAGTGCACCGTTTTTACAAATGCGCTGGACGATTCCGTACAGGC ACATGTAAAGTAACAGTCATTGCTGAAGAAGCAATTGAAAAGGCTTTTTTAGAAACAATG TATTTTTCTATGTACGACGAAAAAGAGTACCTTGCAGAAAAGGAACCCGAAATAGACGCA CAACAAATACAAAAGGAACTTGTCCATATCCAAGGGAAAAAAGCACGTATTAAAGAACTA TACGTAGATGGAGACATTGCGAAAGAGGATTATAAGAAGAAAATTGCAGAGTTGCAGGAA AGAGAAAATGATCTTTTGCTACAGTTAGAGACAGAAGATGTTAGGGCTTCTGAGGAAGAA GTGAGAATGTGGATTAGTAGCGTTAAGGCTAATTGGAACACGCTTTCCTATGAATCTAAA AAGGCTGCGGTTCATGCCATCTTTCGTAGTATGACAATAAGAGTGATTGAGCCACCGAAG GTCGGAAAAGTTGCAGCTCCTCCTGTTGTGGAGATAGTGAATTTTGAGTTAAGATAAGAA ATAATTTAATGGGTTACTTGTCAGTGGTGTGGTTCTTCTTGCATAGGGCAGCCGTCTAGC GCATAAATTGCACCTTCATCTGTACGGGAATACTCCTCCAAACCACGCTTCAGCATCGTT ACGATTGTCGATTTCCCCCCGCTGACTGGCCCCATTAGCAACAGGATTCTTTTTCTGACG TCCAATCTTCTTGCTGCAGAATGGAAGTACTCCTCCACCAGTCGCTCAACACTACGATCT AAACCATAGATTTCACGTCCGAAAAATTTGTAACTCCTGCTACCACCTTCATTTTCTTCA ATACCATGGCTTTTAATCATGTTGTAGACACGTGAATGAGCAGTCTGTGCAATTTGTGGA TGTTTGCGGACAAGCTCAAGATATTCAGCAAACGTGCCTTTCCACGTTAACTTTCCTTCA CGGGCCCGGTGCTCTGCAATTCTTTTTAAAATATCCAT
Region Details
| Region | 1 |
| Region Length | 10.3Kb |
| Completeness(score) | incomplete(10) |
| Specific Keyword | NA |
| Region Position | 299-10656 |
| # tRNA | 0 |
| # Total Proteins | 15 |
| # Phage Hit Proteins | 11 |
| # Hypothetical Proteins | 1 |
| Phage + Hypothetical Protein % | 80% |
| # Bacterial Proteins | 3 |
| Attachment Site | no |
| # Phage Species | 7 |
| Most Common Phage Name(hit genes count) | PHAGE_Paenib_Harrison_NC_028746(4) PHAGE_Brevib_Jimmer1_NC_029104(3) PHAGE_Brevib_Jimmer2_NC_041976(3) PHAGE_Brevib_Osiris_NC_028969(3) PHAGE_Brevib_Davies_NC_022980(3) PHAGE_Deep_s_D6E_NC_019544(1) PHAGE_Lister_A118_NC_003216(1) PHAGE_Paenib_phiIBB_Pl23_NC_021865(1) PHAGE_Lister_vB_LmoS_293_NC_028929(1) PHAGE_Bacill_TP21_L_NC_011645(1) PHAGE_Clostr_phiCTC2B_NC_030951(1) PHAGE_Thermu_phiYS40_NC_008584(1) PHAGE_Brevib_Abouo_NC_029029(1) PHAGE_Bacill_BM5_NC_029069(1) PHAGE_Bacill_BMBtp2_NC_019912(1) PHAGE_Lactob_PLE3_NC_031125(1) PHAGE_Thermu_TMA_NC_015937(1) PHAGE_Clostr_phiCT19406B_NC_030947(1) PHAGE_Bacill_250_NC_029024(1) PHAGE_Bacter_Lily_NC_028841(1) PHAGE_Geobac_E2_NC_009552(1) PHAGE_Lister_A006_NC_009815(1) PHAGE_Lister_LP_030_3_NC_024384(1) |
| First Most Common Phage # | 4 |
| First Most Common Phage % | 26.66% |
| GC % | 35.41% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Questionable (score 70-90)
Incomplete (score < 70)
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Score: | The score of the region based on the above criteria. |
| # Total Proteins: | The number of ORFs present in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi|00000000|ref|QUQX01000028.1| Brevibacillus sp. VP NODE_30_length_19956_cov_149.491301, whole 19956, gc%: 37.51%
Download details as .txt file: detail.txt file_download
Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File
Hits against Bacterial Database or GenBank File
Region 1, total 15 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | 299..805 | PHAGE_Paenib_Harrison_NC_028746: hypothetical protein; DZB91_23630; phage(gi971482366) | 4.80e-47 | Showinfo_outline |
| 2 | complement(795..1148) | PHAGE_Paenib_Harrison_NC_028746: hypothetical protein; DZB91_23635; phage(gi971482365) | 1.90e-14 | Showinfo_outline |
| 3 | complement(1612..2157) | XRE family transcriptional regulator; DZB91_23640 | 0.0 | Showinfo_outline |
| 4 | complement(2616..2828) | PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; DZB91_23645; phage(gi100037) | 1.49e-12 | Showinfo_outline |
| 5 | 2980..3360 | PHAGE_Paenib_phiIBB_Pl23_NC_021865: transcriptional regulator; DZB91_23650; phage(gi526245068) | 5.17e-19 | Showinfo_outline |
| 6 | complement(3764..4111) | hypothetical protein; DZB91_23655 | 0.0 | Showinfo_outline |
| 7 | complement(4117..4248) | cyclic lactone autoinducer peptide; DZB91_23660 | 0.0 | Showinfo_outline |
| 8 | complement(4254..4769) | PHAGE_Paenib_Harrison_NC_028746: accessory gene regulator B; DZB91_23665; phage(gi971482349) | 1.19e-13 | Showinfo_outline |
| 9 | complement(4762..5418) | PHAGE_Brevib_Davies_NC_022980: hypothetical protein; DZB91_23670; phage(gi609217240) | 7.47e-10 | Showinfo_outline |
| 10 | complement(6164..6811) | PHAGE_Brevib_Jimmer2_NC_041976: recombination endonuclease subunit; DZB91_23675; phage(gi100052) | 3.75e-139 | Showinfo_outline |
| 11 | complement(6873..7454) | PHAGE_Brevib_Jimmer2_NC_041976: hypothetical protein; DZB91_23680; phage(gi100051) | 1.99e-138 | Showinfo_outline |
| 12 | complement(8105..8188) | PHAGE_Paenib_Harrison_NC_028746: hypothetical protein; DZB91_23685; phage(gi971482346) | 1.29e-06 | Showinfo_outline |
| 13 | complement(8475..8768) | putative holin-like toxin; DZB91_23690 | 0.0 | Showinfo_outline |
| 14 | 8753..10195 | PHAGE_Bacill_BM5_NC_029069: hypothetical protein; DZB91_23695; phage(gi985757806) | 3.86e-130 | Showinfo_outline |
| 15 | complement(10228..10656) | PHAGE_Thermu_phiYS40_NC_008584: serine kinase; DZB91_23700; phage(gi118197679) | 1.71e-20 | Showinfo_outline |
Sequence
>299..805
BrevibacillusspVPMYSLPQLQALDYLLKNITSNDLYPLYQKNLKFVVNINNSLWCGDFVETKGNYVSQKFIDESGDVETVRFTPFGSNATTFLKLIQDSYVDDCRDQPQYFRSDPFKRINSLPLLFDSLIKILYKANISEETSPLFPYLLNAQSLDNKLSLPFINLEGEKIKLVSIIEIKN
Sequence
>complement(795..1148)
BrevibacillusspVPMSEQNSIKNREEELRRYVREGKITPNQAREELELLPEREIAVFLPTSQEIEEMSIEDFGDWIEKASIELPHRVVERNPLYFFKKRISQLLNDGNLSEAEKEKKILKAIEKFREDFNF
Sequence
>complement(1612..2157)
BrevibacillusspVPMERDINSYGFQLGNSLMELDMTQQKFAEEANVSRETVSAYKNERANAPSDIKAKSVHITDNPFLAIAAAHESSGGTSAPILNGNNVEMNRHTCLIKTVEELEELLVAIKAVKPILIKPPNQYTVEERMQIEAMLQETLDVNTSCTNMTAIICKETKISWIGQWTKHTTKLVARGFLKIVKG
Sequence
>complement(2616..2828)
BrevibacillusspVPMKHHRKTILQQLRKEKKLTQKEAAQKIGISFSMFSKIENGERFGSYETLNAIATFFETTVDYLCGNYTHR
Sequence
>2980..3360
BrevibacillusspVPMVFGKRIAELRKKRGYSQVNFATKISVSKSTVGMWETGDREPDSDTLGKLANFFDVSIDYLLGRTDNPKSTLTDNVRLFVDSLELTDEQILDKISLLNVDGNPLTKEEALEFIAFVRAKRSINNKE
Sequence
>complement(3764..4111)
BrevibacillusspVPMPSFPVVDRKNNCIVYLDTNDVLLVKFARDGNIIFAEGNNQYREFHVLDDWSLFLKPEGFEWIDRGNIVNMNKIESQKNQYVFFNPPYNIKENQVYSTVSRTYINKVTEILRNKK
Sequence
>complement(4117..4248)
BrevibacillusspVPMRIRLARSVSVILTSMANFFVSTASAFMVHQPKPPKELLKNKG
Sequence
>complement(4254..4769)
BrevibacillusspVPMIDSLAEKLAKNIKIASKDDKVSEEVMKFALIIILNTSIVIFISLLIGQLTGKIVETGLTILSFSLLRIVSGGFHFKSAKLCIVTSTLFAVILPHIPIAPGMNYILLVLSLLLIVLYAPSNIEGHSRIPKEKYSQLKILSVIIILSNFIFLSPILSKAFFIQSITLINRGR
Sequence
>complement(4762..5418)
BrevibacillusspVPMIDIVLFYLFSLFEYLAIFTLMFALFRFELKEYLTEMVVLSFIMTFFSHYLRAFLQINDFAPIVLLLVLVVLFWVIGRIPIFYASVMVVTSYLMYGVFQYITFMILSTFIVLSLEEIRLNSEAGYLLQITTIIPTLLVSFGLRRMNLGFGFIPTGFVRIKFRGYNLALLITVCISVVLFGFFNYWIFARGKFALISLIFLGILGVLLYLSKERDIKND
Sequence
>complement(6164..6811)
BrevibacillusspVPMKKSKVLPLLALGAALLSTNVASTVFAEDITTYEKDSNHPDKYREVGSYSEPESTRVKRDTGITYYADGYVKGTAKAKYYKDDKKFELIHKEYVSFVRGVKIKHEYTSNVKEVVESEHNFKGGVEFPIKVVKADLGYEYVSKVTHVIEKGQKLNAEFDEPGEYVVNIYAVGKVYDITADWKAVKYPNNKTTVRDRHIGRITVPTEFRHTQVILDN
Sequence
>complement(6873..7454)
BrevibacillusspVPMFAKKGIHYFFLACYILAFSLILISCDDKKNSVVLDSNKFNNMYENIKNNFKPEGYVEITGDWKISTMVPTLVGESEKQHDVFQENNKTLVYKNEKEGIIVQMGLTPSNTEAFEWKNAIRYAPNFYNSQKKDYGISDHYSDVYPNTEVNTYIFTGKGLNLSIVSISDKIKVPNGIDLSGDFLNSFMEFLSKQP
Sequence
>complement(8105..8188)
BrevibacillusspVPMEVYQALSLMFMFGMFILALLTYLKKK
Sequence
>complement(8475..8768)
BrevibacillusspVPMCQPSNDYLLSICYSNLYYQFMTNSKKCKFISERKNFHDIMARYNRIGSLNGDLGSSPCHSSKGVMLMSVYEALMVMFAFGTFIIALIGLFVKMTKK
Sequence
>8753..10195
BrevibacillusspVPMRVGTYRRVSTEMQREDGVSLQTQDERLKAFIQSQGWSLVEDYADEGYSAKNMDRPALKRLIEDIKRQKIDVVLVYRLDRFVRSVSDLHHLLQVMDKHDVKFKSCTEVFDTTSATGRMFITIIATLAQWERETIAERVFDNMLHRSEQGKRNGAPAPYGYTLEDGILTPDENEATWVRYIFQKYKTNGSQNIAKYLNVRGIRTKKGEVWSDYSVRYILKNPIYAGYVRWNLRSAAKGKNTETVIAKYEQENFEPLISKSDWDDIQGLMKERSFMAFRSDNHYPFSSIAKCEECGHSFTGAFKKRKSGGVHRFYKCAGRFRTGTCKVTVIAEEAIEKAFLETMYFSMYDEKEYLAEKEPEIDAQQIQKELVHIQGKKARIKELYVDGDIAKEDYKKKIAELQERENDLLLQLETEDVRASEEEVRMWISSVKANWNTLSYESKKAAVHAIFRSMTIRVIEPPKVGKVAAPPVVEIVNFELR
Sequence
>complement(10228..10656)
BrevibacillusspVPMDILKRIAEHRAREGKLTWKGTFAEYLELVRKHPQIAQTAHSRVYNMIKSHGIEENEGGSRSYKFFGREIYGLDRSVERLVEEYFHSAARRLDVRKRILLLMGPVSGGKSTIVTMLKRGLEEYSRTDEGAIYALDGCPMQEEP
Brevibacillus sp. VP NODE_30_length_19956_cov_149
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
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Questionable (score 70-90)
Incomplete (score < 70)
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Length: 19956 bps
Phages: 1
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Click on a region in the genome above to show details here.
Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Locus 1: DZB91_23630 (Region 1)
Locus: DZB91_23630ORF Start: 299
ORF Stop: 805
Strand: Forward
Protein Sequence: MYSLPQLQALDYLLKNITSNDLYPLYQKNLKFVVNINNSLWCGDFVETKGNYVSQKFIDESGDVETVRFTPFGSNATTFLKLIQDSYVDDCRDQPQYFRSDPFKRINSLPLLFDSLIKILYKANISEETSPLFPYLLNAQSLDNKLSLPFINLEGEKIKLVSIIEIKN
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: DZB91_23630, hypothetical protein, phage(gi971482366), PHAGE_Paenib_Harrison_NC_028746
Homolog/Ortholog E-Value: 4.80e-47
Locus 2: DZB91_23635 (Region 1)
Locus: DZB91_23635ORF Start: 795
ORF Stop: 1148
Strand: Backward
Protein Sequence: MSEQNSIKNREEELRRYVREGKITPNQAREELELLPEREIAVFLPTSQEIEEMSIEDFGDWIEKASIELPHRVVERNPLYFFKKRISQLLNDGNLSEAEKEKKILKAIEKFREDFNF
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: DZB91_23635, hypothetical protein, phage(gi971482365), PHAGE_Paenib_Harrison_NC_028746
Homolog/Ortholog E-Value: 1.90e-14
Locus 3: DZB91_23640 (Region 1)
Locus: DZB91_23640ORF Start: 1612
ORF Stop: 2157
Strand: Backward
Protein Sequence: MERDINSYGFQLGNSLMELDMTQQKFAEEANVSRETVSAYKNERANAPSDIKAKSVHITDNPFLAIAAAHESSGGTSAPILNGNNVEMNRHTCLIKTVEELEELLVAIKAVKPILIKPPNQYTVEERMQIEAMLQETLDVNTSCTNMTAIICKETKISWIGQWTKHTTKLVARGFLKIVKG
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: DZB91_23640, XRE family transcriptional regulator
Homolog/Ortholog E-Value: N/A
Locus 4: DZB91_23645 (Region 1)
Locus: DZB91_23645ORF Start: 2616
ORF Stop: 2828
Strand: Backward
Protein Sequence: MKHHRKTILQQLRKEKKLTQKEAAQKIGISFSMFSKIENGERFGSYETLNAIATFFETTVDYLCGNYTHR
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: DZB91_23645, hypothetical protein, phage(gi100037), PHAGE_Lactob_PLE3_NC_031125
Homolog/Ortholog E-Value: 1.49e-12
Locus 5: DZB91_23650 (Region 1)
Locus: DZB91_23650ORF Start: 2980
ORF Stop: 3360
Strand: Forward
Protein Sequence: MVFGKRIAELRKKRGYSQVNFATKISVSKSTVGMWETGDREPDSDTLGKLANFFDVSIDYLLGRTDNPKSTLTDNVRLFVDSLELTDEQILDKISLLNVDGNPLTKEEALEFIAFVRAKRSINNKE
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: DZB91_23650, transcriptional regulator, phage(gi526245068), PHAGE_Paenib_phiIBB_Pl23_NC_021865
Homolog/Ortholog E-Value: 5.17e-19
Locus 6: DZB91_23655 (Region 1)
Locus: DZB91_23655ORF Start: 3764
ORF Stop: 4111
Strand: Backward
Protein Sequence: MPSFPVVDRKNNCIVYLDTNDVLLVKFARDGNIIFAEGNNQYREFHVLDDWSLFLKPEGFEWIDRGNIVNMNKIESQKNQYVFFNPPYNIKENQVYSTVSRTYINKVTEILRNKK
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: DZB91_23655, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 7: DZB91_23660 (Region 1)
Locus: DZB91_23660ORF Start: 4117
ORF Stop: 4248
Strand: Backward
Protein Sequence: MRIRLARSVSVILTSMANFFVSTASAFMVHQPKPPKELLKNKG
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: DZB91_23660, cyclic lactone autoinducer peptide
Homolog/Ortholog E-Value: N/A
Locus 8: DZB91_23665 (Region 1)
Locus: DZB91_23665ORF Start: 4254
ORF Stop: 4769
Strand: Backward
Protein Sequence: MIDSLAEKLAKNIKIASKDDKVSEEVMKFALIIILNTSIVIFISLLIGQLTGKIVETGLTILSFSLLRIVSGGFHFKSAKLCIVTSTLFAVILPHIPIAPGMNYILLVLSLLLIVLYAPSNIEGHSRIPKEKYSQLKILSVIIILSNFIFLSPILSKAFFIQSITLINRGR
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: DZB91_23665, accessory gene regulator B, phage(gi971482349), PHAGE_Paenib_Harrison_NC_028746
Homolog/Ortholog E-Value: 1.19e-13
Locus 9: DZB91_23670 (Region 1)
Locus: DZB91_23670ORF Start: 4762
ORF Stop: 5418
Strand: Backward
Protein Sequence: MIDIVLFYLFSLFEYLAIFTLMFALFRFELKEYLTEMVVLSFIMTFFSHYLRAFLQINDFAPIVLLLVLVVLFWVIGRIPIFYASVMVVTSYLMYGVFQYITFMILSTFIVLSLEEIRLNSEAGYLLQITTIIPTLLVSFGLRRMNLGFGFIPTGFVRIKFRGYNLALLITVCISVVLFGFFNYWIFARGKFALISLIFLGILGVLLYLSKERDIKND
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: DZB91_23670, hypothetical protein, phage(gi609217240), PHAGE_Brevib_Davies_NC_022980
Homolog/Ortholog E-Value: 7.47e-10
Locus 10: DZB91_23675 (Region 1)
Locus: DZB91_23675ORF Start: 6164
ORF Stop: 6811
Strand: Backward
Protein Sequence: MKKSKVLPLLALGAALLSTNVASTVFAEDITTYEKDSNHPDKYREVGSYSEPESTRVKRDTGITYYADGYVKGTAKAKYYKDDKKFELIHKEYVSFVRGVKIKHEYTSNVKEVVESEHNFKGGVEFPIKVVKADLGYEYVSKVTHVIEKGQKLNAEFDEPGEYVVNIYAVGKVYDITADWKAVKYPNNKTTVRDRHIGRITVPTEFRHTQVILDN
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: DZB91_23675, recombination endonuclease subunit, phage(gi100052), PHAGE_Brevib_Jimmer2_NC_041976
Homolog/Ortholog E-Value: 3.75e-139
Locus 11: DZB91_23680 (Region 1)
Locus: DZB91_23680ORF Start: 6873
ORF Stop: 7454
Strand: Backward
Protein Sequence: MFAKKGIHYFFLACYILAFSLILISCDDKKNSVVLDSNKFNNMYENIKNNFKPEGYVEITGDWKISTMVPTLVGESEKQHDVFQENNKTLVYKNEKEGIIVQMGLTPSNTEAFEWKNAIRYAPNFYNSQKKDYGISDHYSDVYPNTEVNTYIFTGKGLNLSIVSISDKIKVPNGIDLSGDFLNSFMEFLSKQP
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: DZB91_23680, hypothetical protein, phage(gi100051), PHAGE_Brevib_Jimmer2_NC_041976
Homolog/Ortholog E-Value: 1.99e-138
Locus 12: DZB91_23685 (Region 1)
Locus: DZB91_23685ORF Start: 8105
ORF Stop: 8188
Strand: Backward
Protein Sequence: MEVYQALSLMFMFGMFILALLTYLKKK
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: DZB91_23685, hypothetical protein, phage(gi971482346), PHAGE_Paenib_Harrison_NC_028746
Homolog/Ortholog E-Value: 1.29e-06
Locus 13: DZB91_23690 (Region 1)
Locus: DZB91_23690ORF Start: 8475
ORF Stop: 8768
Strand: Backward
Protein Sequence: MCQPSNDYLLSICYSNLYYQFMTNSKKCKFISERKNFHDIMARYNRIGSLNGDLGSSPCHSSKGVMLMSVYEALMVMFAFGTFIIALIGLFVKMTKK
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: DZB91_23690, putative holin-like toxin
Homolog/Ortholog E-Value: N/A
Locus 14: DZB91_23695 (Region 1)
Locus: DZB91_23695ORF Start: 8753
ORF Stop: 10195
Strand: Forward
Protein Sequence: MRVGTYRRVSTEMQREDGVSLQTQDERLKAFIQSQGWSLVEDYADEGYSAKNMDRPALKRLIEDIKRQKIDVVLVYRLDRFVRSVSDLHHLLQVMDKHDVKFKSCTEVFDTTSATGRMFITIIATLAQWERETIAERVFDNMLHRSEQGKRNGAPAPYGYTLEDGILTPDENEATWVRYIFQKYKTNGSQNIAKYLNVRGIRTKKGEVWSDYSVRYILKNPIYAGYVRWNLRSAAKGKNTETVIAKYEQENFEPLISKSDWDDIQGLMKERSFMAFRSDNHYPFSSIAKCEECGHSFTGAFKKRKSGGVHRFYKCAGRFRTGTCKVTVIAEEAIEKAFLETMYFSMYDEKEYLAEKEPEIDAQQIQKELVHIQGKKARIKELYVDGDIAKEDYKKKIAELQERENDLLLQLETEDVRASEEEVRMWISSVKANWNTLSYESKKAAVHAIFRSMTIRVIEPPKVGKVAAPPVVEIVNFELR
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: DZB91_23695, hypothetical protein, phage(gi985757806), PHAGE_Bacill_BM5_NC_029069
Homolog/Ortholog E-Value: 3.86e-130
Locus 15: DZB91_23700 (Region 1)
Locus: DZB91_23700ORF Start: 10228
ORF Stop: 10656
Strand: Backward
Protein Sequence: MDILKRIAEHRAREGKLTWKGTFAEYLELVRKHPQIAQTAHSRVYNMIKSHGIEENEGGSRSYKFFGREIYGLDRSVERLVEEYFHSAARRLDVRKRILLLMGPVSGGKSTIVTMLKRGLEEYSRTDEGAIYALDGCPMQEEP
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: DZB91_23700, serine kinase, phage(gi118197679), PHAGE_Thermu_phiYS40_NC_008584
Homolog/Ortholog E-Value: 1.71e-20
Lysis
Terminase
Portal Protein
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Other
Transposase
Fiber Protein
Plate Protein
tRNA
Plate Protein
tRNA
Download data as .txt file: png_input file_download